Wall clock time and date at job start Mon Mar 30 2020 04:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42906 * 114.00275 * 2 1 4 4 C 1.52999 * 109.47383 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46982 * 180.02562 * 4 3 2 6 6 S 1.81405 * 109.47092 * 179.97438 * 5 4 3 7 7 O 1.42098 * 109.47050 * 296.38949 * 6 5 4 8 8 C 1.81403 * 102.99919 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46626 * 185.93889 * 8 6 5 10 10 C 1.50694 * 115.56388 * 40.02734 * 9 8 6 11 11 H 1.07995 * 120.00263 * 270.82189 * 10 9 8 12 12 C 1.37879 * 119.99942 * 90.82632 * 10 9 8 13 13 N 1.31506 * 119.99921 * 174.32493 * 12 10 9 14 14 Si 1.86797 * 119.99922 * 354.32548 * 12 10 9 15 15 H 1.48500 * 109.47155 * 92.59600 * 14 12 10 16 16 H 1.48506 * 109.47250 * 212.59820 * 14 12 10 17 17 H 1.48500 * 109.47458 * 332.59573 * 14 12 10 18 18 C 1.53008 * 117.49451 * 185.71817 * 9 8 6 19 19 C 1.53002 * 60.03216 * 107.47671 * 18 9 8 20 20 H 1.09004 * 109.47338 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47785 * 299.99821 * 1 2 3 22 22 H 1.08999 * 109.47276 * 60.00107 * 1 2 3 23 23 H 1.09005 * 109.46673 * 59.99580 * 3 2 1 24 24 H 1.08994 * 109.46556 * 300.00141 * 3 2 1 25 25 H 1.09001 * 109.47262 * 59.99429 * 4 3 2 26 26 H 1.09003 * 109.46915 * 299.99931 * 4 3 2 27 27 H 1.08998 * 109.47316 * 59.99917 * 5 4 3 28 28 H 1.09003 * 109.47135 * 299.99668 * 5 4 3 29 29 H 1.09001 * 109.47011 * 65.93869 * 8 6 5 30 30 H 1.08991 * 109.47306 * 305.93672 * 8 6 5 31 31 H 0.97002 * 120.00118 * 179.97438 * 13 12 10 32 32 H 1.08992 * 117.49563 * 214.97870 * 18 9 8 33 33 H 1.08999 * 117.49711 * 359.97288 * 18 9 8 34 34 H 1.08993 * 117.49859 * 107.50320 * 19 18 9 35 35 H 1.08998 * 117.49435 * 252.51896 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5823 0.0013 6 16 5.9661 2.4391 0.0028 7 8 6.3902 1.8080 1.2032 8 6 6.5124 4.1689 0.0026 9 6 8.0343 4.2230 -0.1454 10 6 8.6290 3.2331 -1.1135 11 1 8.9193 2.2508 -0.7713 12 6 8.8027 3.5815 -2.4362 13 7 9.4226 2.7614 -3.2562 14 14 8.1574 5.2185 -3.0633 15 1 9.2289 6.2422 -2.9682 16 1 7.7348 5.0743 -4.4796 17 1 6.9953 5.6405 -2.2406 18 6 8.7067 5.5928 -0.0332 19 6 8.8533 4.5744 1.0992 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 1.6886 1.8463 -0.8899 25 1 3.8574 0.6435 -0.8891 26 1 3.8567 0.6439 0.8909 27 1 3.8357 3.1230 0.8912 28 1 3.8365 3.1235 -0.8887 29 1 6.2215 4.6419 0.9406 30 1 6.0474 4.6967 -0.8299 31 1 9.5445 3.0064 -4.1869 32 1 9.5792 5.7779 -0.6596 33 1 8.0648 6.4554 0.1456 34 1 9.8222 4.0896 1.2178 35 1 8.3075 4.7669 2.0229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:57 Heat of formation + Delta-G solvation = -67.589551 kcal Electronic energy + Delta-G solvation = -15942.844629 eV Core-core repulsion = 13261.551964 eV Total energy + Delta-G solvation = -2681.292666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.02946 -36.95240 -34.92059 -33.55661 -32.19821 -28.18574 -27.53729 -25.64114 -25.10469 -21.67404 -21.58066 -19.10781 -17.06137 -16.46723 -16.30323 -16.12384 -15.28480 -15.01430 -14.55125 -14.22666 -14.11450 -13.38140 -13.11601 -12.74465 -12.49750 -12.37159 -11.98447 -11.87701 -11.52225 -11.16502 -11.09493 -10.80081 -10.58344 -10.44336 -10.25164 -9.77064 -9.75558 -9.50731 -9.00600 -8.68170 -8.43678 -7.32255 -6.21127 -4.27932 2.17748 3.23660 3.34595 3.36822 3.50155 3.70698 4.34204 4.51066 4.91702 4.96394 5.03522 5.08208 5.16860 5.25459 5.27958 5.44604 5.46787 5.56258 5.65801 5.91907 5.93876 6.12336 6.14943 6.23390 6.26405 6.40381 6.48385 6.72250 6.97050 7.06228 7.12164 7.65592 8.39320 8.83138 9.41462 10.89203 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029260 B = 0.005838 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.704245 B = 4794.738170 C = 5140.428935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.065 3.935 4 C -0.095 4.095 5 C -0.481 4.481 6 S 1.297 4.703 7 O -0.854 6.854 8 C -0.404 4.404 9 C 0.022 3.978 10 C -0.508 4.508 11 H 0.086 0.914 12 C 0.090 3.910 13 N -0.884 5.884 14 Si 0.874 3.126 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.255 1.255 18 C -0.197 4.197 19 C -0.180 4.180 20 H 0.084 0.916 21 H 0.038 0.962 22 H 0.040 0.960 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.268 0.732 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.983 0.860 1.501 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.133 4.133 5 C -0.615 4.615 6 S 1.495 4.505 7 O -0.850 6.850 8 C -0.542 4.542 9 C 0.020 3.980 10 C -0.547 4.547 11 H 0.104 0.896 12 C -0.115 4.115 13 N -0.519 5.519 14 Si 0.702 3.298 15 H -0.204 1.204 16 H -0.217 1.217 17 H -0.179 1.179 18 C -0.235 4.235 19 C -0.217 4.217 20 H 0.103 0.897 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.316 -0.190 1.342 13.385 hybrid contribution -1.249 2.579 1.410 3.193 sum -14.565 2.389 2.752 15.014 Atomic orbital electron populations 1.22716 0.81394 1.02590 0.99795 1.87888 1.19418 1.28485 1.95397 1.22640 0.94388 0.84195 0.99989 1.20986 0.92647 0.95553 1.04150 1.28045 1.26015 1.01168 1.06223 1.71939 0.81221 0.87190 1.10145 1.92966 1.74804 1.65661 1.51547 1.27354 1.04373 1.17956 1.04532 1.18843 0.86933 0.94904 0.97361 1.20362 1.42305 1.00117 0.91890 0.89569 1.24949 0.93388 0.96711 0.96443 1.69898 1.39649 1.36889 1.05456 0.86930 0.80665 0.84515 0.77713 1.20442 1.21653 1.17899 1.22974 1.03610 0.93287 1.03633 1.22891 1.02523 1.04353 0.91961 0.89725 0.94359 0.94123 0.93773 0.93044 0.89721 0.90909 0.90790 0.87110 0.91957 0.87284 0.92170 0.89229 0.91125 0.89267 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.17 10.70 -35.23 -0.38 -5.55 16 3 C 0.07 0.81 5.94 37.16 0.22 1.03 16 4 C -0.10 -1.33 5.59 -26.74 -0.15 -1.48 16 5 C -0.48 -6.86 5.92 37.15 0.22 -6.64 16 6 S 1.30 24.10 12.01 -107.50 -1.29 22.81 16 7 O -0.85 -20.31 18.14 -35.23 -0.64 -20.95 16 8 C -0.40 -7.88 5.88 37.16 0.22 -7.67 16 9 C 0.02 0.49 1.12 -155.62 -0.17 0.32 16 10 C -0.51 -13.11 8.15 -34.44 -0.28 -13.39 16 11 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 12 C 0.09 2.34 5.46 -17.82 -0.10 2.25 16 13 N -0.88 -24.53 13.96 55.43 0.77 -23.75 16 14 Si 0.87 19.61 25.04 -169.99 -4.26 15.35 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.25 -5.25 5.42 56.52 0.31 -4.94 16 18 C -0.20 -4.17 7.61 -26.73 -0.20 -4.37 16 19 C -0.18 -3.90 9.89 -26.69 -0.26 -4.16 16 20 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 28 H 0.11 1.29 8.14 -51.92 -0.42 0.86 16 29 H 0.06 1.15 7.95 -51.92 -0.41 0.74 16 30 H 0.11 1.93 6.42 -51.93 -0.33 1.60 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.09 1.96 7.13 -51.93 -0.37 1.59 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 35 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -31.57 301.55 -6.48 -38.05 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.84 Total: 2.23 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 0.60 Total: -32.73 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.77 Total: -23.75 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.02 Total: -26.50 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.26 Total: 15.35 kcal Atomic # 16 Polarization: 24.10 SS G_CDS: -1.29 Total: 22.81 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.57 -6.48 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.543 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds