Wall clock time and date at job start Mon Mar 30 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42906 * 114.00275 * 2 1 4 4 C 1.52999 * 109.47383 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46982 * 180.02562 * 4 3 2 6 6 S 1.81405 * 109.47092 * 179.97438 * 5 4 3 7 7 O 1.42098 * 109.47050 * 296.38949 * 6 5 4 8 8 C 1.81403 * 102.99919 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46626 * 185.93889 * 8 6 5 10 10 C 1.50694 * 115.56388 * 40.02734 * 9 8 6 11 11 H 1.07995 * 120.00263 * 270.82189 * 10 9 8 12 12 C 1.37879 * 119.99942 * 90.82632 * 10 9 8 13 13 N 1.31506 * 119.99921 * 174.32493 * 12 10 9 14 14 Si 1.86797 * 119.99922 * 354.32548 * 12 10 9 15 15 H 1.48500 * 109.47155 * 92.59600 * 14 12 10 16 16 H 1.48506 * 109.47250 * 212.59820 * 14 12 10 17 17 H 1.48500 * 109.47458 * 332.59573 * 14 12 10 18 18 C 1.53008 * 117.49451 * 185.71817 * 9 8 6 19 19 C 1.53002 * 60.03216 * 107.47671 * 18 9 8 20 20 H 1.09004 * 109.47338 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47785 * 299.99821 * 1 2 3 22 22 H 1.08999 * 109.47276 * 60.00107 * 1 2 3 23 23 H 1.09005 * 109.46673 * 59.99580 * 3 2 1 24 24 H 1.08994 * 109.46556 * 300.00141 * 3 2 1 25 25 H 1.09001 * 109.47262 * 59.99429 * 4 3 2 26 26 H 1.09003 * 109.46915 * 299.99931 * 4 3 2 27 27 H 1.08998 * 109.47316 * 59.99917 * 5 4 3 28 28 H 1.09003 * 109.47135 * 299.99668 * 5 4 3 29 29 H 1.09001 * 109.47011 * 65.93869 * 8 6 5 30 30 H 1.08991 * 109.47306 * 305.93672 * 8 6 5 31 31 H 0.97002 * 120.00118 * 179.97438 * 13 12 10 32 32 H 1.08992 * 117.49563 * 214.97870 * 18 9 8 33 33 H 1.08999 * 117.49711 * 359.97288 * 18 9 8 34 34 H 1.08993 * 117.49859 * 107.50320 * 19 18 9 35 35 H 1.08998 * 117.49435 * 252.51896 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5823 0.0013 6 16 5.9661 2.4391 0.0028 7 8 6.3902 1.8080 1.2032 8 6 6.5124 4.1689 0.0026 9 6 8.0343 4.2230 -0.1454 10 6 8.6290 3.2331 -1.1135 11 1 8.9193 2.2508 -0.7713 12 6 8.8027 3.5815 -2.4362 13 7 9.4226 2.7614 -3.2562 14 14 8.1574 5.2185 -3.0633 15 1 9.2289 6.2422 -2.9682 16 1 7.7348 5.0743 -4.4796 17 1 6.9953 5.6405 -2.2406 18 6 8.7067 5.5928 -0.0332 19 6 8.8533 4.5744 1.0992 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 1.6886 1.8463 -0.8899 25 1 3.8574 0.6435 -0.8891 26 1 3.8567 0.6439 0.8909 27 1 3.8357 3.1230 0.8912 28 1 3.8365 3.1235 -0.8887 29 1 6.2215 4.6419 0.9406 30 1 6.0474 4.6967 -0.8299 31 1 9.5445 3.0064 -4.1869 32 1 9.5792 5.7779 -0.6596 33 1 8.0648 6.4554 0.1456 34 1 9.8222 4.0896 1.2178 35 1 8.3075 4.7669 2.0229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:56 Heat of formation + Delta-G solvation = -90.377247 kcal Electronic energy + Delta-G solvation = -15943.832778 eV Core-core repulsion = 13261.551964 eV Total energy + Delta-G solvation = -2682.280814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.93034 -38.68503 -36.57334 -34.64052 -34.18309 -29.76158 -28.46389 -27.43568 -26.15028 -23.33295 -22.72319 -20.89981 -18.65254 -18.02485 -17.33955 -17.19167 -16.81022 -16.38351 -15.87674 -15.59340 -15.42187 -14.92185 -14.71983 -14.47921 -14.08223 -13.56919 -13.14693 -13.07470 -12.88713 -12.72077 -12.34207 -12.14189 -12.04303 -11.93397 -11.85803 -11.52969 -11.20582 -10.75877 -10.61647 -10.56657 -10.14194 -8.80787 -8.19763 -6.32600 0.73363 1.49827 1.53837 1.66100 2.08534 2.49242 2.81354 3.03149 3.15551 3.25514 3.93181 4.00717 4.15456 4.17796 4.29354 4.41863 4.43516 4.52596 4.55135 4.58285 4.60720 4.81294 4.81803 4.82922 4.86671 5.03871 5.07577 5.16830 5.26582 5.42163 5.77185 6.24085 6.37873 6.77587 7.40323 8.94551 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029260 B = 0.005838 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.704245 B = 4794.738170 C = 5140.428935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.068 3.932 4 C -0.103 4.103 5 C -0.456 4.456 6 S 1.281 4.719 7 O -0.919 6.919 8 C -0.398 4.398 9 C -0.001 4.001 10 C -0.509 4.509 11 H 0.037 0.963 12 C 0.044 3.956 13 N -0.934 5.934 14 Si 0.928 3.072 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.216 1.216 18 C -0.180 4.180 19 C -0.189 4.189 20 H 0.096 0.904 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.151 0.849 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.271 0.729 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.873 3.386 0.981 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.010 4.010 4 C -0.141 4.141 5 C -0.593 4.593 6 S 1.484 4.516 7 O -0.915 6.915 8 C -0.536 4.536 9 C -0.002 4.002 10 C -0.547 4.547 11 H 0.055 0.945 12 C -0.157 4.157 13 N -0.571 5.571 14 Si 0.751 3.249 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.138 1.138 18 C -0.219 4.219 19 C -0.227 4.227 20 H 0.114 0.886 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.169 0.831 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.174 2.331 0.848 16.363 hybrid contribution -0.400 1.689 1.608 2.366 sum -16.574 4.020 2.457 17.231 Atomic orbital electron populations 1.22938 0.79383 1.03848 1.00964 1.87842 1.21683 1.29062 1.95645 1.22603 0.92640 0.84318 1.01419 1.21048 0.94584 0.95168 1.03330 1.27728 1.21011 1.02016 1.08583 1.71121 0.84231 0.87049 1.09166 1.92903 1.77837 1.67651 1.53096 1.27225 1.01895 1.18126 1.06388 1.18870 0.88992 0.95298 0.97084 1.20318 1.42363 0.99076 0.92964 0.94529 1.25715 0.93317 1.00365 0.96295 1.70032 1.41674 1.39398 1.05989 0.86074 0.81328 0.79663 0.77815 1.20698 1.21270 1.13794 1.23020 1.03254 0.93380 1.02219 1.22923 1.02000 1.04950 0.92801 0.88602 0.93471 0.92595 0.93188 0.90648 0.88993 0.93608 0.90117 0.83055 0.90552 0.84524 0.91994 0.90298 0.87792 0.90944 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.33 10.70 -148.98 -1.59 -11.92 16 3 C 0.07 1.48 5.94 71.98 0.43 1.90 16 4 C -0.10 -2.72 5.59 30.59 0.17 -2.55 16 5 C -0.46 -11.61 5.92 71.98 0.43 -11.18 16 6 S 1.28 46.85 12.01 -56.49 -0.68 46.17 16 7 O -0.92 -45.06 18.14 -148.98 -2.70 -47.76 16 8 C -0.40 -14.34 5.88 71.98 0.42 -13.91 16 9 C 0.00 -0.03 1.12 -52.90 -0.06 -0.09 16 10 C -0.51 -26.83 8.15 25.60 0.21 -26.62 16 11 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16 12 C 0.04 2.28 5.46 84.66 0.46 2.74 16 13 N -0.93 -53.24 13.96 21.45 0.30 -52.94 16 14 Si 0.93 38.46 25.04 68.60 1.72 40.18 16 15 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.22 -7.52 5.42 99.48 0.54 -6.98 16 18 C -0.18 -7.15 7.61 30.60 0.23 -6.91 16 19 C -0.19 -8.05 9.89 30.62 0.30 -7.75 16 20 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.08 2.55 7.95 -2.39 -0.02 2.53 16 30 H 0.14 4.11 6.42 -2.39 -0.02 4.09 16 31 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.08 3.29 7.13 -2.39 -0.02 3.28 16 33 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.09 3.30 8.09 -2.39 -0.02 3.29 16 Total: -1.00 -70.96 301.55 1.76 -69.20 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.87 Total: 19.81 kcal Atomic # 6 Polarization: -66.57 SS G_CDS: 3.84 Total: -62.73 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.30 Total: -52.94 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -4.30 Total: -59.68 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.72 Total: 40.18 kcal Atomic # 16 Polarization: 46.85 SS G_CDS: -0.68 Total: 46.17 kcal Total: -70.96 1.76 -69.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.178 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds