Wall clock time and date at job start Mon Mar 30 2020 04:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47347 * 300.00470 * 3 2 1 6 6 H 1.48498 * 109.46737 * 60.00124 * 3 2 1 7 7 C 1.37875 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99489 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46929 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00022 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00082 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99945 * 180.02562 * 11 10 9 14 14 H 1.08994 * 110.37971 * 57.61510 * 13 11 10 15 15 C 1.53753 * 110.69958 * 295.27273 * 13 11 10 16 16 N 1.46533 * 105.18819 * 241.42825 * 15 13 11 17 17 C 1.39581 * 110.08569 * 359.65001 * 16 15 13 18 18 C 1.39679 * 129.32472 * 180.20578 * 17 16 15 19 19 C 1.37824 * 120.28006 * 180.02562 * 18 17 16 20 20 C 1.38305 * 120.23343 * 0.02562 * 19 18 17 21 21 C 1.38227 * 119.83188 * 359.97438 * 20 19 18 22 22 C 1.38173 * 120.15386 * 359.97438 * 21 20 19 23 23 H 0.96997 * 119.99672 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47810 * 59.99886 * 9 7 2 25 25 H 1.09006 * 109.47137 * 299.99792 * 9 7 2 26 26 H 0.97002 * 119.99889 * 359.97438 * 10 9 7 27 27 H 1.09005 * 110.40203 * 122.44752 * 15 13 11 28 28 H 1.08999 * 110.20477 * 0.30868 * 15 13 11 29 29 H 0.97001 * 124.96106 * 179.97438 * 16 15 13 30 30 H 1.07999 * 119.85408 * 0.02688 * 18 17 16 31 31 H 1.08001 * 119.88601 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.08229 * 180.02562 * 20 19 18 33 33 H 1.08007 * 119.92405 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7539 -4.8833 -0.0029 12 8 0.5616 -5.1049 -0.0039 13 6 2.7332 -6.0287 -0.0021 14 1 3.3945 -5.9621 0.8618 15 6 3.5551 -6.0420 -1.3014 16 7 3.2408 -7.3221 -1.9414 17 6 2.3416 -8.0435 -1.1544 18 6 1.7821 -9.3035 -1.3788 19 6 0.9027 -9.8458 -0.4665 20 6 0.5671 -9.1459 0.6782 21 6 1.1166 -7.8984 0.9073 22 6 1.9995 -7.3509 -0.0037 23 1 -0.4849 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6241 -2.5574 0.8881 26 1 3.1568 -3.4353 -0.0010 27 1 4.6203 -5.9824 -1.0779 28 1 3.2561 -5.2142 -1.9445 29 1 3.6079 -7.6261 -2.7863 30 1 2.0397 -9.8551 -2.2708 31 1 0.4742 -10.8208 -0.6461 32 1 -0.1219 -9.5734 1.3916 33 1 0.8552 -7.3504 1.8006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087655551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:05 Heat of formation + Delta-G solvation = -6.786677 kcal Electronic energy + Delta-G solvation = -17064.234720 eV Core-core repulsion = 14282.427465 eV Total energy + Delta-G solvation = -2781.807255 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55642 -38.26831 -36.02630 -34.19406 -32.39507 -31.83232 -29.15666 -29.02725 -26.98483 -23.49590 -22.80343 -21.89331 -21.15945 -19.50466 -17.53876 -17.05910 -15.93187 -15.73838 -15.46539 -14.95167 -14.75270 -14.18478 -13.76941 -13.63608 -13.37956 -12.63764 -12.42994 -12.40856 -12.19499 -11.94861 -11.52491 -11.33842 -10.97255 -10.91066 -10.68172 -10.32539 -10.05162 -9.39247 -9.08910 -8.75203 -8.56979 -7.89460 -7.24503 -6.17863 -4.24970 1.60011 1.78421 3.22375 3.29482 3.31282 3.32370 3.42843 3.87445 4.23219 4.40834 4.64993 4.72146 5.13301 5.18329 5.19957 5.26428 5.48145 5.52503 5.69611 5.72830 5.82926 5.93025 6.20839 6.47604 6.67670 6.81249 6.82846 7.28636 7.33176 7.42109 7.50783 7.65484 7.86457 7.95720 8.60933 8.77158 9.08982 9.41907 10.92370 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045984 B = 0.004705 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.759526 B = 5949.981587 C = 6325.230540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.712 5.712 11 C 0.506 3.494 12 O -0.540 6.540 13 C -0.077 4.077 14 H 0.109 0.891 15 C 0.128 3.872 16 N -0.746 5.746 17 C 0.197 3.803 18 C -0.188 4.188 19 C -0.076 4.076 20 C -0.177 4.177 21 C -0.035 4.035 22 C -0.142 4.142 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.390 0.610 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.411 0.589 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.979 -15.752 -1.415 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.361 5.361 11 C 0.289 3.711 12 O -0.418 6.418 13 C -0.099 4.099 14 H 0.127 0.873 15 C 0.003 3.997 16 N -0.379 5.379 17 C 0.094 3.906 18 C -0.211 4.211 19 C -0.095 4.095 20 C -0.197 4.197 21 C -0.054 4.054 22 C -0.147 4.147 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.222 0.778 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.249 0.751 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.021 -15.591 -1.429 17.158 hybrid contribution 0.995 1.029 -0.412 1.489 sum 8.016 -14.562 -1.841 16.724 Atomic orbital electron populations 1.69988 1.06125 1.27203 1.48940 1.24958 0.94900 0.99464 0.94699 0.86366 0.79820 0.82985 0.77764 1.19622 1.20817 1.20779 1.21258 0.93287 0.90422 1.53144 0.91824 1.19114 0.88310 0.81932 0.97750 1.46469 1.11060 1.05982 1.72592 1.20122 0.89216 0.83851 0.77876 1.90678 1.16528 1.84639 1.49921 1.20846 0.96837 0.92775 0.99453 0.87317 1.21731 0.98613 0.86659 0.92659 1.44630 1.49863 1.18786 1.24644 1.18330 0.89945 0.91942 0.90360 1.20216 1.03854 0.94970 1.02058 1.20704 0.96141 0.99021 0.93645 1.20790 1.03829 0.95926 0.99199 1.20330 0.93026 0.94104 0.97947 1.19340 1.03330 0.95174 0.96861 0.92489 0.95595 0.95511 0.77772 0.90730 0.90760 0.75143 0.86837 0.86309 0.86273 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 10 N -0.71 -14.77 5.53 -61.47 -0.34 -15.11 16 11 C 0.51 10.21 6.93 -10.98 -0.08 10.13 16 12 O -0.54 -13.33 15.73 5.56 0.09 -13.24 16 13 C -0.08 -1.17 3.41 -92.28 -0.31 -1.49 16 14 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.13 1.61 7.60 -3.63 -0.03 1.58 16 16 N -0.75 -9.18 6.53 -58.11 -0.38 -9.56 16 17 C 0.20 2.86 7.03 -83.66 -0.59 2.27 16 18 C -0.19 -2.44 10.07 -39.20 -0.39 -2.83 16 19 C -0.08 -0.95 10.02 -39.71 -0.40 -1.34 16 20 C -0.18 -2.39 10.06 -39.56 -0.40 -2.79 16 21 C -0.04 -0.55 9.54 -39.61 -0.38 -0.93 16 22 C -0.14 -2.28 5.04 -104.26 -0.53 -2.80 16 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 29 H 0.41 3.91 8.96 -40.82 -0.37 3.55 16 30 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 287.50 15.07 4.33 4.33 Total: -1.00 -33.13 287.50 -8.15 -41.28 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.02 Total: 6.84 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.55 Total: -4.88 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.02 Total: -49.99 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.13 -8.15 -41.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087655551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.493 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds