Wall clock time and date at job start Mon Mar 30 2020 04:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47347 * 300.00470 * 3 2 1 6 6 H 1.48498 * 109.46737 * 60.00124 * 3 2 1 7 7 C 1.37875 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99489 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46929 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00022 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00082 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99945 * 180.02562 * 11 10 9 14 14 H 1.08994 * 110.37971 * 57.61510 * 13 11 10 15 15 C 1.53753 * 110.69958 * 295.27273 * 13 11 10 16 16 N 1.46533 * 105.18819 * 241.42825 * 15 13 11 17 17 C 1.39581 * 110.08569 * 359.65001 * 16 15 13 18 18 C 1.39679 * 129.32472 * 180.20578 * 17 16 15 19 19 C 1.37824 * 120.28006 * 180.02562 * 18 17 16 20 20 C 1.38305 * 120.23343 * 0.02562 * 19 18 17 21 21 C 1.38227 * 119.83188 * 359.97438 * 20 19 18 22 22 C 1.38173 * 120.15386 * 359.97438 * 21 20 19 23 23 H 0.96997 * 119.99672 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47810 * 59.99886 * 9 7 2 25 25 H 1.09006 * 109.47137 * 299.99792 * 9 7 2 26 26 H 0.97002 * 119.99889 * 359.97438 * 10 9 7 27 27 H 1.09005 * 110.40203 * 122.44752 * 15 13 11 28 28 H 1.08999 * 110.20477 * 0.30868 * 15 13 11 29 29 H 0.97001 * 124.96106 * 179.97438 * 16 15 13 30 30 H 1.07999 * 119.85408 * 0.02688 * 18 17 16 31 31 H 1.08001 * 119.88601 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.08229 * 180.02562 * 20 19 18 33 33 H 1.08007 * 119.92405 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7539 -4.8833 -0.0029 12 8 0.5616 -5.1049 -0.0039 13 6 2.7332 -6.0287 -0.0021 14 1 3.3945 -5.9621 0.8618 15 6 3.5551 -6.0420 -1.3014 16 7 3.2408 -7.3221 -1.9414 17 6 2.3416 -8.0435 -1.1544 18 6 1.7821 -9.3035 -1.3788 19 6 0.9027 -9.8458 -0.4665 20 6 0.5671 -9.1459 0.6782 21 6 1.1166 -7.8984 0.9073 22 6 1.9995 -7.3509 -0.0037 23 1 -0.4849 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6241 -2.5574 0.8881 26 1 3.1568 -3.4353 -0.0010 27 1 4.6203 -5.9824 -1.0779 28 1 3.2561 -5.2142 -1.9445 29 1 3.6079 -7.6261 -2.7863 30 1 2.0397 -9.8551 -2.2708 31 1 0.4742 -10.8208 -0.6461 32 1 -0.1219 -9.5734 1.3916 33 1 0.8552 -7.3504 1.8006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087655551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:05 Heat of formation + Delta-G solvation = -31.047177 kcal Electronic energy + Delta-G solvation = -17065.286734 eV Core-core repulsion = 14282.427465 eV Total energy + Delta-G solvation = -2782.859270 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.76308 -39.81562 -37.08597 -36.15428 -34.36672 -33.02475 -30.40400 -30.12397 -28.82755 -25.17583 -24.04600 -23.23684 -22.34096 -21.13577 -19.04717 -18.33129 -17.66748 -17.19408 -16.59002 -16.42241 -16.31846 -15.85932 -15.21116 -14.77667 -14.52429 -14.25282 -13.99917 -13.93082 -13.47126 -13.44004 -12.93301 -12.88033 -12.72927 -12.38644 -12.21448 -11.73837 -11.45585 -11.08114 -10.82166 -10.76965 -9.84978 -9.66110 -8.30141 -8.25063 -6.46218 0.52522 0.72787 1.43711 1.44763 1.58325 1.70825 2.30570 2.46415 2.54917 3.05677 3.06065 3.48336 3.62423 4.01586 4.14201 4.28080 4.32156 4.57018 4.69580 4.71619 4.73029 4.87239 5.10697 5.18479 5.22686 5.44833 5.47990 5.63667 5.68355 5.76891 5.79217 5.84027 6.30001 6.65075 6.89217 7.00481 7.23226 7.47527 8.83167 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045984 B = 0.004705 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.759526 B = 5949.981587 C = 6325.230540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.267 3.733 10 N -0.703 5.703 11 C 0.504 3.496 12 O -0.592 6.592 13 C -0.068 4.068 14 H 0.136 0.864 15 C 0.131 3.869 16 N -0.739 5.739 17 C 0.186 3.814 18 C -0.192 4.192 19 C -0.073 4.073 20 C -0.187 4.187 21 C -0.060 4.060 22 C -0.178 4.178 23 H 0.268 0.732 24 H -0.015 1.015 25 H -0.014 1.014 26 H 0.410 0.590 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.425 0.575 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.137 0.863 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.594 -16.500 -2.138 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.353 5.353 11 C 0.290 3.710 12 O -0.472 6.472 13 C -0.089 4.089 14 H 0.154 0.846 15 C 0.006 3.994 16 N -0.374 5.374 17 C 0.082 3.918 18 C -0.214 4.214 19 C -0.092 4.092 20 C -0.207 4.207 21 C -0.079 4.079 22 C -0.183 4.183 23 H 0.077 0.923 24 H 0.003 0.997 25 H 0.004 0.996 26 H 0.246 0.754 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.266 0.734 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.155 0.845 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.704 -16.368 -2.169 19.151 hybrid contribution 0.098 1.157 -0.189 1.176 sum 9.802 -15.211 -2.358 18.249 Atomic orbital electron populations 1.70156 1.08381 1.28492 1.50126 1.26085 0.95739 1.03981 0.93852 0.85099 0.79197 0.77240 0.77603 1.17375 1.20566 1.20548 1.21651 0.94399 0.90387 1.52675 0.89516 1.18544 0.88723 0.84425 0.93939 1.46168 1.11204 1.05197 1.72755 1.21113 0.89553 0.84560 0.75739 1.90646 1.19309 1.85415 1.51859 1.20842 0.95957 0.89863 1.02255 0.84595 1.21807 1.00267 0.86446 0.90840 1.44611 1.49389 1.18277 1.25076 1.18571 0.90395 0.92673 0.90122 1.20619 1.03279 0.94546 1.02998 1.21133 0.95309 1.00090 0.92651 1.21091 1.03943 0.95352 1.00284 1.20480 0.94093 0.95294 0.98045 1.19564 1.04749 0.95845 0.98160 0.92291 0.99743 0.99599 0.75446 0.86530 0.91940 0.73445 0.84154 0.82987 0.84477 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.03 29.54 68.60 2.03 44.06 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -29.90 9.28 25.60 0.24 -29.66 16 8 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 14.73 5.43 85.63 0.46 15.20 16 10 N -0.70 -29.65 5.53 -466.78 -2.58 -32.24 16 11 C 0.50 20.85 6.93 87.66 0.61 21.46 16 12 O -0.59 -30.79 15.73 -3.01 -0.05 -30.84 16 13 C -0.07 -2.00 3.41 -11.87 -0.04 -2.04 16 14 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 15 C 0.13 2.98 7.60 86.63 0.66 3.64 16 16 N -0.74 -16.39 6.53 -337.77 -2.20 -18.60 16 17 C 0.19 5.10 7.03 38.34 0.27 5.37 16 18 C -0.19 -4.50 10.07 22.52 0.23 -4.27 16 19 C -0.07 -1.65 10.02 22.19 0.22 -1.43 16 20 C -0.19 -4.89 10.06 22.28 0.22 -4.66 16 21 C -0.06 -1.92 9.54 22.25 0.21 -1.70 16 22 C -0.18 -5.64 5.04 -19.63 -0.10 -5.74 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 26 H 0.41 13.85 8.32 -92.71 -0.77 13.08 16 27 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.06 1.58 7.71 -2.39 -0.02 1.56 16 29 H 0.43 6.86 8.96 -92.71 -0.83 6.03 16 30 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.11 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -75.45 287.50 0.46 -74.99 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.46 Total: 22.14 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 3.45 Total: -3.23 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -4.50 Total: -107.13 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -75.45 0.46 -74.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087655551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.945 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds