Wall clock time and date at job start Mon Mar 30 2020 04:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99971 * 2 1 4 4 H 1.48494 * 109.47303 * 270.00198 * 3 2 1 5 5 H 1.48496 * 109.47137 * 30.00346 * 3 2 1 6 6 H 1.48502 * 109.47184 * 150.00374 * 3 2 1 7 7 C 1.37876 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00259 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00049 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00155 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99997 * 180.02562 * 11 10 9 14 14 H 1.09004 * 110.37663 * 299.07700 * 13 11 10 15 15 C 1.53754 * 110.42192 * 61.44882 * 13 11 10 16 16 N 1.46533 * 105.18149 * 118.88600 * 15 13 11 17 17 C 1.39576 * 110.09105 * 0.02562 * 16 15 13 18 18 C 1.39680 * 129.32653 * 180.02562 * 17 16 15 19 19 C 1.37829 * 120.28261 * 180.25808 * 18 17 16 20 20 C 1.38304 * 120.23094 * 359.43797 * 19 18 17 21 21 C 1.38235 * 119.82955 * 0.57184 * 20 19 18 22 22 C 1.38166 * 120.15132 * 359.71587 * 21 20 19 23 23 H 0.97006 * 120.00056 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47599 * 59.99731 * 9 7 2 25 25 H 1.08998 * 109.47022 * 299.99809 * 9 7 2 26 26 H 0.96997 * 119.99974 * 359.97438 * 10 9 7 27 27 H 1.09003 * 110.30072 * 359.96648 * 15 13 11 28 28 H 1.08992 * 110.38383 * 237.85374 * 15 13 11 29 29 H 0.96999 * 124.95815 * 180.02562 * 16 15 13 30 30 H 1.08002 * 119.85442 * 359.97302 * 18 17 16 31 31 H 1.08000 * 119.88393 * 179.74185 * 19 18 17 32 32 H 1.07998 * 120.08719 * 180.26568 * 20 19 18 33 33 H 1.08000 * 119.91894 * 179.69873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3249 -2.8215 -0.0020 12 8 6.1131 -1.8997 -0.0025 13 6 5.8273 -4.2423 -0.0024 14 1 5.4863 -4.7657 0.8908 15 6 5.3560 -4.9776 -1.2678 16 7 6.5843 -5.3641 -1.9671 17 6 7.7008 -4.9354 -1.2475 18 6 9.0572 -5.0879 -1.5441 19 6 10.0160 -4.5894 -0.6887 20 6 9.6421 -3.9238 0.4645 21 6 8.3018 -3.7690 0.7652 22 6 7.3369 -4.2722 -0.0861 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8744 -0.6800 -0.8911 26 1 3.3696 -3.3125 -0.0002 27 1 4.7592 -4.3122 -1.8917 28 1 4.7789 -5.8626 -0.9999 29 1 6.6169 -5.8474 -2.8074 30 1 9.3558 -5.6028 -2.4453 31 1 11.0630 -4.7146 -0.9223 32 1 10.3954 -3.5303 1.1310 33 1 8.0082 -3.2537 1.6679 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087655552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:08 Heat of formation + Delta-G solvation = -3.069199 kcal Electronic energy + Delta-G solvation = -17125.066234 eV Core-core repulsion = 14343.420180 eV Total energy + Delta-G solvation = -2781.646053 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63921 -38.41946 -36.09394 -34.32641 -32.43389 -31.92071 -29.31018 -29.13613 -27.51377 -23.44722 -22.73862 -21.80339 -21.13149 -19.69555 -17.61418 -17.18792 -16.20036 -15.87526 -15.53104 -14.98334 -14.85735 -14.22890 -13.77690 -13.66831 -13.45751 -12.81751 -12.55869 -12.50480 -12.35314 -12.29210 -11.69206 -11.43361 -11.04401 -10.77483 -10.73131 -10.11057 -9.98292 -9.51976 -9.25544 -8.79644 -8.63796 -8.17505 -7.30095 -6.23395 -4.25760 1.53819 1.72654 3.16277 3.26019 3.32582 3.37632 3.41259 3.78044 4.18985 4.32228 4.57218 4.65064 5.07451 5.12135 5.14847 5.19496 5.41064 5.46781 5.63457 5.67157 5.74762 5.87043 6.14973 6.41709 6.61979 6.75349 6.77017 6.79819 7.05322 7.19512 7.26028 7.37079 7.81338 8.11194 8.48543 8.72946 8.90629 9.36908 10.88477 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039094 B = 0.005186 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.051359 B = 5397.899587 C = 5830.968693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.705 5.705 11 C 0.508 3.492 12 O -0.543 6.543 13 C -0.076 4.076 14 H 0.112 0.888 15 C 0.127 3.873 16 N -0.746 5.746 17 C 0.198 3.802 18 C -0.188 4.188 19 C -0.076 4.076 20 C -0.178 4.178 21 C -0.035 4.035 22 C -0.144 4.144 23 H 0.268 0.732 24 H 0.025 0.975 25 H 0.020 0.980 26 H 0.396 0.604 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.412 0.588 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.559 -12.292 -1.574 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.354 5.354 11 C 0.292 3.708 12 O -0.420 6.420 13 C -0.098 4.098 14 H 0.130 0.870 15 C 0.002 3.998 16 N -0.379 5.379 17 C 0.095 3.905 18 C -0.211 4.211 19 C -0.094 4.094 20 C -0.198 4.198 21 C -0.053 4.053 22 C -0.149 4.149 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.229 0.771 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.249 0.751 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.747 -11.476 -1.575 18.752 hybrid contribution -0.121 0.391 -0.427 0.592 sum 14.626 -11.084 -2.002 18.460 Atomic orbital electron populations 1.69877 1.06211 1.27446 1.49410 1.24786 0.94774 0.99156 0.93832 0.86827 0.80600 0.83271 0.79069 1.19866 1.20866 1.18498 1.21083 0.88483 0.95222 1.53375 0.90223 1.19495 0.95234 0.78630 0.96790 1.46186 1.05488 1.11053 1.72688 1.20189 0.83129 0.90003 0.77500 1.90669 1.55519 1.45775 1.50068 1.20820 0.93584 0.95371 0.99981 0.87021 1.21764 0.87330 0.98687 0.92057 1.44640 1.03117 1.64117 1.26001 1.18333 0.88415 0.92910 0.90869 1.20226 0.89876 1.08688 1.02292 1.20715 0.98410 0.96425 0.93888 1.20794 0.95420 1.04508 0.99077 1.20327 0.91728 0.95090 0.98188 1.19325 0.93077 1.05351 0.97158 0.92244 0.95677 0.96219 0.77054 0.90662 0.90542 0.75072 0.86790 0.86281 0.86271 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.54 -14.75 9.83 -34.44 -0.34 -15.09 16 8 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 9 C 0.22 5.40 4.50 -5.19 -0.02 5.37 16 10 N -0.71 -14.01 5.42 -61.47 -0.33 -14.34 16 11 C 0.51 9.73 6.96 -10.98 -0.08 9.65 16 12 O -0.54 -12.59 15.70 5.56 0.09 -12.50 16 13 C -0.08 -1.10 3.42 -92.27 -0.32 -1.42 16 14 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.13 1.53 7.54 -3.63 -0.03 1.50 16 16 N -0.75 -8.82 6.53 -58.12 -0.38 -9.20 16 17 C 0.20 2.76 7.03 -83.66 -0.59 2.17 16 18 C -0.19 -2.34 10.07 -39.19 -0.39 -2.73 16 19 C -0.08 -0.90 10.02 -39.71 -0.40 -1.30 16 20 C -0.18 -2.29 10.06 -39.56 -0.40 -2.69 16 21 C -0.03 -0.51 9.49 -39.61 -0.38 -0.89 16 22 C -0.14 -2.21 5.08 -104.26 -0.53 -2.74 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 24 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 25 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 26 H 0.40 6.77 8.30 -40.82 -0.34 6.43 16 27 H 0.08 0.98 7.64 -51.93 -0.40 0.58 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.41 3.76 8.96 -40.82 -0.37 3.39 16 30 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 283.63 15.07 4.27 4.27 Total: -1.00 -32.95 283.63 -7.79 -40.74 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.98 Total: 5.84 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -3.56 Total: -6.05 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.06 Total: -49.08 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.95 -7.79 -40.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087655552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.673 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds