Wall clock time and date at job start Mon Mar 30 2020 04:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99971 * 2 1 4 4 H 1.48494 * 109.47303 * 270.00198 * 3 2 1 5 5 H 1.48496 * 109.47137 * 30.00346 * 3 2 1 6 6 H 1.48502 * 109.47184 * 150.00374 * 3 2 1 7 7 C 1.37876 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00259 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00049 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00155 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99997 * 180.02562 * 11 10 9 14 14 H 1.09004 * 110.37663 * 299.07700 * 13 11 10 15 15 C 1.53754 * 110.42192 * 61.44882 * 13 11 10 16 16 N 1.46533 * 105.18149 * 118.88600 * 15 13 11 17 17 C 1.39576 * 110.09105 * 0.02562 * 16 15 13 18 18 C 1.39680 * 129.32653 * 180.02562 * 17 16 15 19 19 C 1.37829 * 120.28261 * 180.25808 * 18 17 16 20 20 C 1.38304 * 120.23094 * 359.43797 * 19 18 17 21 21 C 1.38235 * 119.82955 * 0.57184 * 20 19 18 22 22 C 1.38166 * 120.15132 * 359.71587 * 21 20 19 23 23 H 0.97006 * 120.00056 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47599 * 59.99731 * 9 7 2 25 25 H 1.08998 * 109.47022 * 299.99809 * 9 7 2 26 26 H 0.96997 * 119.99974 * 359.97438 * 10 9 7 27 27 H 1.09003 * 110.30072 * 359.96648 * 15 13 11 28 28 H 1.08992 * 110.38383 * 237.85374 * 15 13 11 29 29 H 0.96999 * 124.95815 * 180.02562 * 16 15 13 30 30 H 1.08002 * 119.85442 * 359.97302 * 18 17 16 31 31 H 1.08000 * 119.88393 * 179.74185 * 19 18 17 32 32 H 1.07998 * 120.08719 * 180.26568 * 20 19 18 33 33 H 1.08000 * 119.91894 * 179.69873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3249 -2.8215 -0.0020 12 8 6.1131 -1.8997 -0.0025 13 6 5.8273 -4.2423 -0.0024 14 1 5.4863 -4.7657 0.8908 15 6 5.3560 -4.9776 -1.2678 16 7 6.5843 -5.3641 -1.9671 17 6 7.7008 -4.9354 -1.2475 18 6 9.0572 -5.0879 -1.5441 19 6 10.0160 -4.5894 -0.6887 20 6 9.6421 -3.9238 0.4645 21 6 8.3018 -3.7690 0.7652 22 6 7.3369 -4.2722 -0.0861 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8744 -0.6800 -0.8911 26 1 3.3696 -3.3125 -0.0002 27 1 4.7592 -4.3122 -1.8917 28 1 4.7789 -5.8626 -0.9999 29 1 6.6169 -5.8474 -2.8074 30 1 9.3558 -5.6028 -2.4453 31 1 11.0630 -4.7146 -0.9223 32 1 10.3954 -3.5303 1.1310 33 1 8.0082 -3.2537 1.6679 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087655552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:08 Heat of formation + Delta-G solvation = -26.995639 kcal Electronic energy + Delta-G solvation = -17126.103762 eV Core-core repulsion = 14343.420180 eV Total energy + Delta-G solvation = -2782.683582 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78322 -39.85921 -37.09288 -36.17996 -34.42647 -33.05906 -30.66583 -30.12516 -29.15587 -24.88229 -23.96326 -23.15267 -22.32502 -21.22119 -19.20153 -18.39741 -17.84734 -17.22058 -16.56294 -16.43340 -16.32961 -15.89224 -15.24769 -14.78337 -14.60447 -14.51545 -14.16840 -14.02434 -13.48478 -13.45298 -13.04204 -12.96921 -12.69350 -12.38195 -11.95430 -11.74165 -11.65573 -11.09055 -10.92820 -10.82166 -9.95687 -9.66120 -8.40939 -8.26036 -6.47501 0.52551 0.73060 1.30943 1.33848 1.45979 1.66393 2.26698 2.37791 2.49379 2.94616 3.04339 3.47296 3.61297 3.98644 4.12984 4.27962 4.32182 4.57152 4.68017 4.70621 4.71676 4.82679 4.86846 5.00997 5.18048 5.24952 5.45313 5.49085 5.64084 5.76989 5.79641 6.07858 6.29954 6.53370 6.81768 6.99365 7.14971 7.38273 8.73665 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039094 B = 0.005186 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.051359 B = 5397.899587 C = 5830.968693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.232 3.768 10 N -0.702 5.702 11 C 0.508 3.492 12 O -0.586 6.586 13 C -0.068 4.068 14 H 0.136 0.864 15 C 0.129 3.871 16 N -0.739 5.739 17 C 0.186 3.814 18 C -0.192 4.192 19 C -0.073 4.073 20 C -0.187 4.187 21 C -0.058 4.058 22 C -0.177 4.177 23 H 0.272 0.728 24 H 0.011 0.989 25 H 0.008 0.992 26 H 0.410 0.590 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.425 0.575 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.071 -13.373 -2.244 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.108 3.892 10 N -0.352 5.352 11 C 0.295 3.705 12 O -0.466 6.466 13 C -0.090 4.090 14 H 0.154 0.846 15 C 0.004 3.996 16 N -0.374 5.374 17 C 0.082 3.918 18 C -0.215 4.215 19 C -0.092 4.092 20 C -0.206 4.206 21 C -0.076 4.076 22 C -0.183 4.183 23 H 0.082 0.918 24 H 0.029 0.971 25 H 0.026 0.974 26 H 0.246 0.754 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.265 0.735 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.247 -12.604 -2.261 20.686 hybrid contribution -0.550 0.669 -0.222 0.894 sum 15.697 -11.935 -2.483 19.875 Atomic orbital electron populations 1.69970 1.07584 1.28579 1.50694 1.25543 0.95484 1.02466 0.93637 0.85914 0.79252 0.79688 0.79377 1.19134 1.19707 1.18732 1.21275 0.89770 0.94680 1.52537 0.91886 1.19088 0.93480 0.81093 0.95496 1.46003 1.06461 1.09708 1.72982 1.21026 0.82067 0.91815 0.75600 1.90640 1.56423 1.47772 1.51755 1.20828 0.93587 0.92114 1.02430 0.84618 1.21823 0.87536 0.99627 0.90641 1.44623 1.02404 1.63898 1.26439 1.18574 0.89554 0.92983 0.90673 1.20611 0.89349 1.08344 1.03188 1.21131 1.00057 0.95009 0.92978 1.21094 0.95007 1.04554 0.99985 1.20480 0.92949 0.95908 0.98310 1.19534 0.93309 1.07008 0.98402 0.91833 0.97086 0.97397 0.75394 0.91758 0.86915 0.73496 0.84306 0.83092 0.84454 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 2 C 0.03 1.65 5.47 84.66 0.46 2.11 16 3 Si 0.93 44.26 27.47 68.60 1.88 46.15 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 7 C -0.54 -29.81 9.83 25.60 0.25 -29.56 16 8 H 0.06 3.58 7.84 -2.91 -0.02 3.56 16 9 C 0.23 11.43 4.50 85.63 0.38 11.81 16 10 N -0.70 -27.74 5.42 -466.79 -2.53 -30.27 16 11 C 0.51 19.38 6.96 87.66 0.61 19.99 16 12 O -0.59 -27.53 15.70 -3.03 -0.05 -27.57 16 13 C -0.07 -1.90 3.42 -11.87 -0.04 -1.94 16 14 H 0.14 3.06 8.14 -2.38 -0.02 3.04 16 15 C 0.13 2.82 7.54 86.63 0.65 3.47 16 16 N -0.74 -15.71 6.53 -337.78 -2.20 -17.91 16 17 C 0.19 4.83 7.03 38.34 0.27 5.10 16 18 C -0.19 -4.26 10.07 22.52 0.23 -4.04 16 19 C -0.07 -1.54 10.02 22.19 0.22 -1.32 16 20 C -0.19 -4.54 10.06 22.28 0.22 -4.31 16 21 C -0.06 -1.70 9.49 22.25 0.21 -1.49 16 22 C -0.18 -5.28 5.08 -19.63 -0.10 -5.38 16 23 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 24 H 0.01 0.58 7.20 -2.39 -0.02 0.57 16 25 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 26 H 0.41 13.78 8.30 -92.71 -0.77 13.01 16 27 H 0.06 1.56 7.64 -2.39 -0.02 1.55 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.42 6.59 8.96 -92.71 -0.83 5.76 16 30 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.11 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -71.14 283.63 0.26 -70.88 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -0.52 Total: 19.15 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 3.38 Total: -5.56 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.43 Total: -103.04 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -71.14 0.26 -70.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087655552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.880 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds