Wall clock time and date at job start Mon Mar 30 2020 04:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99929 * 2 1 4 4 H 1.48503 * 109.47128 * 239.99946 * 3 2 1 5 5 H 1.48499 * 109.47292 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47015 * 120.00159 * 3 2 1 7 7 C 1.37876 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00481 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47655 * 180.02562 * 9 7 2 11 11 C 1.38329 * 119.99690 * 89.99891 * 10 9 7 12 12 C 1.39483 * 119.50816 * 89.04501 * 11 10 9 13 13 C 1.36745 * 119.40874 * 180.02562 * 12 11 10 14 14 C 1.40658 * 118.47065 * 359.73503 * 13 12 11 15 15 C 1.46780 * 120.50188 * 180.26050 * 14 13 12 16 16 O 1.21300 * 120.00532 * 0.27159 * 15 14 13 17 17 C 1.39882 * 118.99217 * 0.52787 * 14 13 12 18 18 N 1.31601 * 120.47804 * 359.45867 * 17 14 13 19 19 C 1.46500 * 120.00035 * 270.00539 * 10 9 7 20 20 C 1.52998 * 117.49625 * 183.34448 * 19 10 9 21 21 C 1.52990 * 117.49995 * 114.72376 * 19 10 9 22 22 H 0.97000 * 120.00148 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47078 * 59.99722 * 9 7 2 24 24 H 1.09007 * 109.46836 * 300.00626 * 9 7 2 25 25 H 1.08000 * 120.29707 * 0.04594 * 12 11 10 26 26 H 1.08001 * 120.76573 * 179.97438 * 13 12 11 27 27 H 1.08004 * 119.99543 * 180.27013 * 15 14 13 28 28 H 1.07994 * 119.76335 * 179.73688 * 17 14 13 29 29 H 1.08996 * 115.54970 * 329.04498 * 19 10 9 30 30 H 1.09000 * 117.50229 * 359.97438 * 20 19 10 31 31 H 1.09001 * 117.49600 * 145.01376 * 20 19 10 32 32 H 1.09005 * 117.49795 * 214.97569 * 21 19 10 33 33 H 1.09004 * 117.50198 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6525 -4.1383 1.1975 12 6 1.9418 -5.1748 1.8026 13 6 2.3876 -5.6925 2.9871 14 6 3.5597 -5.1595 3.5531 15 6 4.0812 -5.6856 4.8202 16 8 3.5033 -6.5902 5.3851 17 6 4.2178 -4.1165 2.8928 18 7 3.7527 -3.6488 1.7540 19 6 2.6792 -4.1694 -1.2693 20 6 3.6109 -5.3811 -1.2036 21 6 4.1650 -4.0105 -1.5971 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 1.0475 -5.5651 1.3396 26 1 1.8541 -6.4950 3.4749 27 1 4.9796 -5.2673 5.2496 28 1 5.1164 -3.6951 3.3184 29 1 1.9729 -4.1216 -2.0981 30 1 3.8701 -5.7639 -0.2164 31 1 3.5176 -6.1309 -1.9893 32 1 4.4364 -3.8584 -2.6418 33 1 4.7884 -3.4913 -0.8691 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087717788.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:27 Heat of formation + Delta-G solvation = 48.415352 kcal Electronic energy + Delta-G solvation = -17288.645938 eV Core-core repulsion = 14509.232422 eV Total energy + Delta-G solvation = -2779.413516 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24230 -38.66029 -37.07477 -33.86240 -32.41352 -32.20465 -30.22337 -26.84666 -24.55443 -23.29553 -22.42228 -21.85938 -21.55327 -19.91424 -17.10853 -16.69020 -16.29185 -16.02863 -15.58469 -14.79741 -14.41766 -14.37250 -14.23838 -13.62150 -13.05755 -12.73579 -12.50827 -12.40207 -12.10716 -11.20175 -11.09388 -11.04981 -10.62125 -10.52392 -10.17147 -9.97543 -9.80091 -9.67241 -9.45432 -9.06852 -8.64177 -8.40606 -7.03190 -5.98221 -4.04158 0.65080 1.57855 2.52614 3.34199 3.37803 3.41716 3.84265 4.08600 4.26428 4.37183 4.47761 4.82614 5.04702 5.09983 5.23874 5.32855 5.36950 5.45818 5.53545 5.59607 5.91253 5.94478 6.20180 6.27102 6.28309 6.41817 6.63259 6.69931 7.14341 7.33242 7.38191 7.92802 8.20705 8.26518 8.36490 8.60538 9.06770 9.61686 11.06433 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.006980 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.353899 B = 4010.641539 C = 4652.362900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.277 3.723 10 N -0.638 5.638 11 C 0.450 3.550 12 C -0.191 4.191 13 C -0.015 4.015 14 C -0.278 4.278 15 C 0.393 3.607 16 O -0.473 6.473 17 C 0.164 3.836 18 N -0.495 5.495 19 C 0.138 3.862 20 C -0.206 4.206 21 C -0.203 4.203 22 H 0.262 0.738 23 H 0.033 0.967 24 H 0.021 0.979 25 H 0.137 0.863 26 H 0.136 0.864 27 H 0.104 0.896 28 H 0.158 0.842 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.973 -10.369 2.785 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.159 3.841 10 N -0.364 5.364 11 C 0.224 3.776 12 C -0.214 4.214 13 C -0.041 4.041 14 C -0.282 4.282 15 C 0.253 3.747 16 O -0.347 6.347 17 C 0.003 3.997 18 N -0.206 5.206 19 C 0.032 3.968 20 C -0.245 4.245 21 C -0.243 4.243 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.155 0.845 26 H 0.154 0.846 27 H 0.120 0.880 28 H 0.175 0.825 29 H 0.137 0.863 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.863 -9.999 2.633 12.410 hybrid contribution 0.166 0.593 0.369 0.718 sum 7.029 -9.406 3.002 12.120 Atomic orbital electron populations 1.69922 1.05972 1.26952 1.51385 1.24976 0.94811 0.99156 0.95486 0.86605 0.79495 0.82935 0.78642 1.20265 1.21446 1.20375 1.21738 0.94032 0.90727 1.49571 0.91739 1.19017 0.86076 0.81789 0.97261 1.45752 1.51796 1.40730 0.98087 1.18426 0.86378 0.85974 0.86858 1.22211 1.02772 0.99261 0.97135 1.21407 0.93058 0.96451 0.93184 1.21818 1.00918 1.03972 1.01456 1.23777 0.87287 0.80507 0.83172 1.90508 1.58360 1.25800 1.60068 1.23003 0.97058 0.89955 0.89643 1.67972 1.14569 1.27517 1.10586 1.21157 0.90842 0.96507 0.88289 1.23223 1.07001 0.92108 1.02143 1.23442 1.00753 0.98499 1.01648 0.92853 0.94943 0.96093 0.84467 0.84583 0.87974 0.82517 0.86349 0.90029 0.88952 0.89418 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.42 9.39 -34.44 -0.32 -14.74 16 8 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.28 6.93 5.47 -5.20 -0.03 6.90 16 10 N -0.64 -13.24 2.77 -167.66 -0.46 -13.70 16 11 C 0.45 8.61 4.41 -155.32 -0.69 7.93 16 12 C -0.19 -3.11 9.92 -39.66 -0.39 -3.50 16 13 C -0.02 -0.22 9.65 -39.21 -0.38 -0.60 16 14 C -0.28 -3.75 5.89 -104.92 -0.62 -4.37 16 15 C 0.39 4.46 11.46 34.18 0.39 4.85 16 16 O -0.47 -6.96 17.23 5.54 0.10 -6.86 16 17 C 0.16 2.37 10.96 -17.04 -0.19 2.19 16 18 N -0.50 -9.32 10.39 -12.07 -0.13 -9.44 16 19 C 0.14 2.46 6.57 -67.94 -0.45 2.02 16 20 C -0.21 -3.10 9.83 -26.74 -0.26 -3.36 16 21 C -0.20 -3.39 10.36 -26.74 -0.28 -3.67 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 24 H 0.02 0.57 8.04 -51.93 -0.42 0.15 16 25 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 26 H 0.14 1.76 7.72 -52.49 -0.41 1.36 16 27 H 0.10 0.72 8.06 -52.48 -0.42 0.30 16 28 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 30 H 0.08 1.29 7.05 -51.93 -0.37 0.93 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -31.64 297.65 -7.71 -39.35 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.11 Total: -0.17 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.31 Total: -4.87 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.15 Total: -48.72 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: 0.10 Total: -6.86 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.64 -7.71 -39.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087717788.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.767 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds