Wall clock time and date at job start Mon Mar 30 2020 04:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99929 * 2 1 4 4 H 1.48503 * 109.47128 * 239.99946 * 3 2 1 5 5 H 1.48499 * 109.47292 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47015 * 120.00159 * 3 2 1 7 7 C 1.37876 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00481 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47655 * 180.02562 * 9 7 2 11 11 C 1.38329 * 119.99690 * 89.99891 * 10 9 7 12 12 C 1.39483 * 119.50816 * 89.04501 * 11 10 9 13 13 C 1.36745 * 119.40874 * 180.02562 * 12 11 10 14 14 C 1.40658 * 118.47065 * 359.73503 * 13 12 11 15 15 C 1.46780 * 120.50188 * 180.26050 * 14 13 12 16 16 O 1.21300 * 120.00532 * 0.27159 * 15 14 13 17 17 C 1.39882 * 118.99217 * 0.52787 * 14 13 12 18 18 N 1.31601 * 120.47804 * 359.45867 * 17 14 13 19 19 C 1.46500 * 120.00035 * 270.00539 * 10 9 7 20 20 C 1.52998 * 117.49625 * 183.34448 * 19 10 9 21 21 C 1.52990 * 117.49995 * 114.72376 * 19 10 9 22 22 H 0.97000 * 120.00148 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47078 * 59.99722 * 9 7 2 24 24 H 1.09007 * 109.46836 * 300.00626 * 9 7 2 25 25 H 1.08000 * 120.29707 * 0.04594 * 12 11 10 26 26 H 1.08001 * 120.76573 * 179.97438 * 13 12 11 27 27 H 1.08004 * 119.99543 * 180.27013 * 15 14 13 28 28 H 1.07994 * 119.76335 * 179.73688 * 17 14 13 29 29 H 1.08996 * 115.54970 * 329.04498 * 19 10 9 30 30 H 1.09000 * 117.50229 * 359.97438 * 20 19 10 31 31 H 1.09001 * 117.49600 * 145.01376 * 20 19 10 32 32 H 1.09005 * 117.49795 * 214.97569 * 21 19 10 33 33 H 1.09004 * 117.50198 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6525 -4.1383 1.1975 12 6 1.9418 -5.1748 1.8026 13 6 2.3876 -5.6925 2.9871 14 6 3.5597 -5.1595 3.5531 15 6 4.0812 -5.6856 4.8202 16 8 3.5033 -6.5902 5.3851 17 6 4.2178 -4.1165 2.8928 18 7 3.7527 -3.6488 1.7540 19 6 2.6792 -4.1694 -1.2693 20 6 3.6109 -5.3811 -1.2036 21 6 4.1650 -4.0105 -1.5971 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 1.0475 -5.5651 1.3396 26 1 1.8541 -6.4950 3.4749 27 1 4.9796 -5.2673 5.2496 28 1 5.1164 -3.6951 3.3184 29 1 1.9729 -4.1216 -2.0981 30 1 3.8701 -5.7639 -0.2164 31 1 3.5176 -6.1309 -1.9893 32 1 4.4364 -3.8584 -2.6418 33 1 4.7884 -3.4913 -0.8691 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087717788.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:26 Heat of formation + Delta-G solvation = 29.175344 kcal Electronic energy + Delta-G solvation = -17289.480248 eV Core-core repulsion = 14509.232422 eV Total energy + Delta-G solvation = -2780.247825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.46194 -39.77522 -38.39436 -35.59254 -34.17038 -33.47051 -31.64996 -28.68495 -25.90714 -24.49069 -24.28512 -23.11799 -22.72374 -21.23072 -18.60241 -18.14086 -17.72301 -17.40106 -17.20674 -16.21999 -15.84097 -15.63833 -15.35820 -14.94405 -14.47557 -14.20849 -13.99572 -13.85540 -13.66662 -13.01665 -12.93504 -12.51071 -12.36164 -12.14851 -12.10669 -11.34696 -11.18409 -11.00968 -10.91765 -10.58178 -10.33276 -9.86510 -8.67549 -8.04854 -6.26503 -0.49376 0.38633 1.39014 1.40714 1.48838 1.50916 2.34887 2.49164 2.88521 3.06637 3.14194 3.36272 3.69587 3.92346 3.94579 4.06039 4.08486 4.26487 4.29307 4.50640 4.74748 4.78004 4.92337 5.02212 5.07997 5.12565 5.16629 5.25803 5.34097 5.54148 5.75689 6.20041 6.47711 6.53191 6.87146 6.93400 7.23789 7.45114 8.90781 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.006980 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.353899 B = 4010.641539 C = 4652.362900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.295 3.705 10 N -0.645 5.645 11 C 0.418 3.582 12 C -0.196 4.196 13 C -0.017 4.017 14 C -0.270 4.270 15 C 0.407 3.593 16 O -0.505 6.505 17 C 0.162 3.838 18 N -0.532 5.532 19 C 0.107 3.893 20 C -0.171 4.171 21 C -0.205 4.205 22 H 0.264 0.736 23 H 0.015 0.985 24 H -0.008 1.008 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.163 0.837 28 H 0.198 0.802 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 -10.937 3.668 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.174 3.826 10 N -0.370 5.370 11 C 0.192 3.808 12 C -0.219 4.219 13 C -0.043 4.043 14 C -0.273 4.273 15 C 0.268 3.732 16 O -0.381 6.381 17 C 0.002 3.998 18 N -0.244 5.244 19 C 0.001 3.999 20 C -0.209 4.209 21 C -0.245 4.245 22 H 0.073 0.927 23 H 0.033 0.967 24 H 0.010 0.990 25 H 0.158 0.842 26 H 0.169 0.831 27 H 0.179 0.821 28 H 0.215 0.785 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.760 -10.593 3.513 14.188 hybrid contribution -0.373 0.696 0.174 0.808 sum 8.386 -9.898 3.687 13.486 Atomic orbital electron populations 1.70030 1.07291 1.27820 1.52207 1.25764 0.95637 1.02514 0.95155 0.85618 0.78344 0.78975 0.78746 1.19529 1.20675 1.20132 1.21928 0.93422 0.92164 1.49259 0.93076 1.18474 0.86394 0.82815 0.94911 1.45470 1.51692 1.39884 0.99949 1.18549 0.87692 0.87609 0.86956 1.22196 1.02777 0.99066 0.97885 1.21665 0.93624 0.96536 0.92476 1.22235 0.99936 1.02924 1.02189 1.24424 0.88044 0.79296 0.81451 1.90522 1.59642 1.27384 1.60518 1.23623 0.98012 0.89817 0.88327 1.67868 1.15068 1.28909 1.12600 1.21400 0.91599 0.99163 0.87695 1.23192 1.03555 0.91523 1.02586 1.23383 0.99272 0.99766 1.02050 0.92703 0.96653 0.98980 0.84185 0.83111 0.82062 0.78500 0.86008 0.90766 0.85775 0.87502 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.53 -30.08 9.39 25.60 0.24 -29.84 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.29 15.46 5.47 85.63 0.47 15.93 16 10 N -0.64 -27.66 2.77 -684.35 -1.89 -29.55 16 11 C 0.42 16.24 4.41 133.30 0.59 16.83 16 12 C -0.20 -6.46 9.92 22.22 0.22 -6.23 16 13 C -0.02 -0.48 9.65 22.51 0.22 -0.26 16 14 C -0.27 -6.60 5.89 -20.06 -0.12 -6.72 16 15 C 0.41 7.63 11.46 70.06 0.80 8.43 16 16 O -0.51 -13.38 17.23 -3.09 -0.05 -13.44 16 17 C 0.16 4.34 10.96 85.13 0.93 5.27 16 18 N -0.53 -19.93 10.39 -192.11 -2.00 -21.93 16 19 C 0.11 3.85 6.57 44.99 0.30 4.15 16 20 C -0.17 -4.90 9.83 30.59 0.30 -4.60 16 21 C -0.20 -6.76 10.36 30.59 0.32 -6.44 16 22 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 23 H 0.02 0.84 8.07 -2.39 -0.02 0.83 16 24 H -0.01 -0.44 8.04 -2.38 -0.02 -0.46 16 25 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 26 H 0.15 3.69 7.72 -2.91 -0.02 3.67 16 27 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 28 H 0.20 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.07 2.27 7.05 -2.39 -0.02 2.26 16 31 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 33 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 Total: -1.00 -70.65 297.65 4.20 -66.45 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.10 Total: 9.23 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.73 Total: -2.60 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.60 Total: -106.73 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.05 Total: -13.44 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.65 4.20 -66.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087717788.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.627 kcal (2) G-P(sol) polarization free energy of solvation -70.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds