Wall clock time and date at job start Mon Mar 30 2020 04:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86802 * 120.00310 * 2 1 4 4 H 1.48502 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47078 * 299.99999 * 3 2 1 6 6 H 1.48493 * 109.46942 * 60.00246 * 3 2 1 7 7 C 1.39896 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00157 * 193.52691 * 7 2 1 9 9 C 1.41159 * 120.00109 * 13.52760 * 7 2 1 10 10 C 1.40865 * 120.16571 * 208.48150 * 9 7 2 11 11 C 1.36377 * 119.82944 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16762 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83202 * 180.02562 * 12 11 10 14 14 C 1.46420 * 119.23357 * 292.17627 * 13 12 11 15 15 C 1.53237 * 109.15413 * 208.88796 * 14 13 12 16 16 C 1.53248 * 108.71286 * 304.84151 * 15 14 13 17 17 N 1.46382 * 109.15182 * 55.38569 * 16 15 14 18 18 C 1.34130 * 121.34395 * 330.91551 * 17 16 15 19 19 O 1.21578 * 118.70056 * 180.59773 * 18 17 16 20 20 C 1.39475 * 120.33239 * 0.27153 * 12 11 10 21 21 C 1.36376 * 120.17076 * 359.44458 * 20 12 11 22 22 H 0.96995 * 119.99757 * 359.97438 * 1 2 3 23 23 H 1.08006 * 120.08717 * 0.02562 * 10 9 7 24 24 H 1.08003 * 119.91197 * 179.97438 * 11 10 9 25 25 H 1.09002 * 109.34191 * 89.09367 * 14 13 12 26 26 H 1.09007 * 109.70937 * 328.90459 * 14 13 12 27 27 H 1.08992 * 109.62585 * 185.02309 * 15 14 13 28 28 H 1.09004 * 109.62172 * 64.65131 * 15 14 13 29 29 H 1.09003 * 109.51966 * 175.28726 * 16 15 14 30 30 H 1.08996 * 109.52437 * 295.41546 * 16 15 14 31 31 H 0.97003 * 119.32366 * 150.94036 * 17 16 15 32 32 H 1.08000 * 119.91660 * 179.72681 * 20 12 11 33 33 H 1.07998 * 120.08676 * 180.27681 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3963 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0658 -1.2245 0.2193 9 6 1.3318 -2.4172 -0.2849 10 6 1.7891 -3.6321 0.2622 11 6 1.1307 -4.7929 -0.0185 12 6 0.0074 -4.7793 -0.8454 13 7 -0.6598 -5.9686 -1.1269 14 6 0.0059 -6.9863 -1.9423 15 6 -1.0526 -7.7957 -2.6991 16 6 -2.0522 -8.3656 -1.6870 17 7 -2.6060 -7.2699 -0.8898 18 6 -1.8994 -6.1554 -0.6496 19 8 -2.4022 -5.2799 0.0278 20 6 -0.4477 -3.5812 -1.3956 21 6 0.1969 -2.4116 -1.1194 22 1 -0.4849 0.8400 0.0004 23 1 2.6590 -3.6442 0.9022 24 1 1.4804 -5.7252 0.3998 25 1 0.5780 -7.6505 -1.2945 26 1 0.6757 -6.5057 -2.6555 27 1 -0.5725 -8.6119 -3.2388 28 1 -1.5742 -7.1478 -3.4036 29 1 -2.8577 -8.8737 -2.2172 30 1 -1.5440 -9.0733 -1.0320 31 1 -3.5021 -7.3517 -0.5275 32 1 -1.3155 -3.5791 -2.0385 33 1 -0.1593 -1.4841 -1.5426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093965609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:20 Heat of formation + Delta-G solvation = -3.066634 kcal Electronic energy + Delta-G solvation = -17478.750110 eV Core-core repulsion = 14697.104167 eV Total energy + Delta-G solvation = -2781.645942 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31326 -37.44820 -35.99525 -34.65919 -33.02765 -30.77170 -29.51214 -28.91604 -25.94367 -24.64928 -22.89245 -21.09279 -20.70592 -18.63932 -17.28334 -17.17296 -16.72692 -15.54237 -15.42957 -15.00379 -14.08328 -13.96014 -13.70005 -13.49324 -12.94709 -12.75033 -12.17088 -11.98862 -11.75073 -11.44221 -11.27767 -11.11883 -11.04044 -10.82567 -10.40287 -9.84719 -9.59219 -9.41875 -9.21672 -8.81422 -8.13348 -7.50090 -7.13070 -6.70427 -4.32861 2.70850 3.09776 3.12112 3.14555 3.15476 3.27757 3.72354 3.96056 4.22114 4.63892 4.73752 4.87101 5.12258 5.39008 5.48718 5.57176 5.70376 5.84745 6.06436 6.24589 6.37535 6.64282 6.86511 7.09287 7.13364 7.27130 7.36039 7.39936 7.63829 7.96382 8.07970 8.12936 8.29831 8.41439 8.65059 8.90557 8.96388 9.25256 10.24117 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.050033 B = 0.005420 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.499093 B = 5164.863287 C = 5395.811075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.115 3.885 10 C -0.218 4.218 11 C -0.084 4.084 12 C 0.009 3.991 13 N -0.553 5.553 14 C 0.115 3.885 15 C -0.153 4.153 16 C 0.114 3.886 17 N -0.747 5.747 18 C 0.700 3.300 19 O -0.583 6.583 20 C -0.075 4.075 21 C -0.156 4.156 22 H 0.280 0.720 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.408 0.592 32 H 0.085 0.915 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -12.360 -5.735 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.112 3.888 10 C -0.238 4.238 11 C -0.104 4.104 12 C -0.082 4.082 13 N -0.285 5.285 14 C -0.008 4.008 15 C -0.192 4.192 16 C -0.011 4.011 17 N -0.407 5.407 18 C 0.401 3.599 19 O -0.459 6.459 20 C -0.095 4.095 21 C -0.176 4.176 22 H 0.091 0.909 23 H 0.114 0.886 24 H 0.105 0.895 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.245 0.755 32 H 0.103 0.897 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.335 -11.715 -5.437 12.984 hybrid contribution -0.094 0.506 0.139 0.533 sum -1.429 -11.209 -5.298 12.480 Atomic orbital electron populations 1.69863 1.07492 1.29130 1.35244 1.25940 0.94782 1.01327 0.92425 0.86235 0.80820 0.80952 0.78534 1.18426 1.19755 1.19993 1.19586 0.96730 0.90778 1.41876 0.90302 1.17677 0.91044 0.92107 0.87954 1.20622 1.03830 0.92879 1.06460 1.20285 0.96212 0.96894 0.96997 1.16715 0.98853 0.83770 1.08847 1.43776 1.13888 1.17931 1.52900 1.21557 0.94851 0.90367 0.94018 1.22204 0.97809 1.00840 0.98303 1.21424 0.97212 0.89392 0.93109 1.45001 1.19517 1.17729 1.58450 1.15666 0.81665 0.82270 0.80250 1.90978 1.69116 1.42452 1.43381 1.20439 0.97858 0.92512 0.98733 1.20924 0.99222 0.96209 1.01251 0.90860 0.88627 0.89485 0.92468 0.89943 0.89084 0.90626 0.90550 0.92297 0.75512 0.89661 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.30 10.97 55.55 0.61 -20.70 16 2 C 0.07 1.87 5.20 -17.34 -0.09 1.78 16 3 Si 0.91 18.92 29.58 -169.99 -5.03 13.89 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.36 9.04 -37.85 -0.34 -12.70 16 8 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 9 C 0.11 3.13 5.54 -106.80 -0.59 2.54 16 10 C -0.22 -5.46 9.74 -39.26 -0.38 -5.85 16 11 C -0.08 -1.97 9.77 -39.79 -0.39 -2.36 16 12 C 0.01 0.21 4.63 -83.57 -0.39 -0.18 16 13 N -0.55 -10.90 2.85 -118.96 -0.34 -11.24 16 14 C 0.12 1.63 6.39 -3.96 -0.03 1.60 16 15 C -0.15 -1.58 6.19 -26.48 -0.16 -1.74 16 16 C 0.11 1.13 7.21 -3.98 -0.03 1.10 16 17 N -0.75 -10.84 5.58 -65.53 -0.37 -11.21 16 18 C 0.70 14.27 8.05 -88.07 -0.71 13.56 16 19 O -0.58 -14.94 16.55 5.30 0.09 -14.85 16 20 C -0.08 -1.92 9.26 -39.79 -0.37 -2.29 16 21 C -0.16 -4.24 8.60 -39.26 -0.34 -4.57 16 22 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 23 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 24 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 5.24 8.88 -40.82 -0.36 4.88 16 32 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.12 3.30 6.30 -52.49 -0.33 2.97 16 LS Contribution 280.76 15.07 4.23 4.23 Total: -1.00 -32.84 280.76 -8.66 -41.51 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.04 Total: 7.46 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.82 Total: -9.10 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.10 Total: -43.15 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.84 -8.66 -41.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.439 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds