Wall clock time and date at job start Mon Mar 30 2020 04:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86802 * 120.00310 * 2 1 4 4 H 1.48502 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47078 * 299.99999 * 3 2 1 6 6 H 1.48493 * 109.46942 * 60.00246 * 3 2 1 7 7 C 1.39896 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00157 * 193.52691 * 7 2 1 9 9 C 1.41159 * 120.00109 * 13.52760 * 7 2 1 10 10 C 1.40865 * 120.16571 * 208.48150 * 9 7 2 11 11 C 1.36377 * 119.82944 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16762 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83202 * 180.02562 * 12 11 10 14 14 C 1.46420 * 119.23357 * 292.17627 * 13 12 11 15 15 C 1.53237 * 109.15413 * 208.88796 * 14 13 12 16 16 C 1.53248 * 108.71286 * 304.84151 * 15 14 13 17 17 N 1.46382 * 109.15182 * 55.38569 * 16 15 14 18 18 C 1.34130 * 121.34395 * 330.91551 * 17 16 15 19 19 O 1.21578 * 118.70056 * 180.59773 * 18 17 16 20 20 C 1.39475 * 120.33239 * 0.27153 * 12 11 10 21 21 C 1.36376 * 120.17076 * 359.44458 * 20 12 11 22 22 H 0.96995 * 119.99757 * 359.97438 * 1 2 3 23 23 H 1.08006 * 120.08717 * 0.02562 * 10 9 7 24 24 H 1.08003 * 119.91197 * 179.97438 * 11 10 9 25 25 H 1.09002 * 109.34191 * 89.09367 * 14 13 12 26 26 H 1.09007 * 109.70937 * 328.90459 * 14 13 12 27 27 H 1.08992 * 109.62585 * 185.02309 * 15 14 13 28 28 H 1.09004 * 109.62172 * 64.65131 * 15 14 13 29 29 H 1.09003 * 109.51966 * 175.28726 * 16 15 14 30 30 H 1.08996 * 109.52437 * 295.41546 * 16 15 14 31 31 H 0.97003 * 119.32366 * 150.94036 * 17 16 15 32 32 H 1.08000 * 119.91660 * 179.72681 * 20 12 11 33 33 H 1.07998 * 120.08676 * 180.27681 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3963 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0658 -1.2245 0.2193 9 6 1.3318 -2.4172 -0.2849 10 6 1.7891 -3.6321 0.2622 11 6 1.1307 -4.7929 -0.0185 12 6 0.0074 -4.7793 -0.8454 13 7 -0.6598 -5.9686 -1.1269 14 6 0.0059 -6.9863 -1.9423 15 6 -1.0526 -7.7957 -2.6991 16 6 -2.0522 -8.3656 -1.6870 17 7 -2.6060 -7.2699 -0.8898 18 6 -1.8994 -6.1554 -0.6496 19 8 -2.4022 -5.2799 0.0278 20 6 -0.4477 -3.5812 -1.3956 21 6 0.1969 -2.4116 -1.1194 22 1 -0.4849 0.8400 0.0004 23 1 2.6590 -3.6442 0.9022 24 1 1.4804 -5.7252 0.3998 25 1 0.5780 -7.6505 -1.2945 26 1 0.6757 -6.5057 -2.6555 27 1 -0.5725 -8.6119 -3.2388 28 1 -1.5742 -7.1478 -3.4036 29 1 -2.8577 -8.8737 -2.2172 30 1 -1.5440 -9.0733 -1.0320 31 1 -3.5021 -7.3517 -0.5275 32 1 -1.3155 -3.5791 -2.0385 33 1 -0.1593 -1.4841 -1.5426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093965609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:19 Heat of formation + Delta-G solvation = -25.014339 kcal Electronic energy + Delta-G solvation = -17479.701833 eV Core-core repulsion = 14697.104167 eV Total energy + Delta-G solvation = -2782.597666 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78749 -39.30868 -37.41570 -36.27820 -34.77999 -32.07706 -31.46486 -30.74119 -27.39426 -26.20234 -24.26055 -22.96849 -22.44497 -20.02232 -19.26385 -18.52397 -18.13743 -17.26244 -16.82922 -16.55747 -15.77189 -15.53570 -15.03799 -14.65293 -14.56461 -14.41694 -13.99953 -13.68773 -13.40770 -12.97049 -12.79569 -12.59162 -12.35559 -12.24245 -12.14839 -11.69296 -11.49665 -11.11467 -11.07504 -10.11408 -9.73027 -9.50075 -9.03469 -8.62678 -6.35788 0.82471 1.11855 1.39026 1.47748 1.55685 1.89815 2.18836 2.21862 2.71337 3.04517 3.66746 3.84694 3.97748 4.28980 4.35761 4.41435 4.51263 4.67941 4.77951 4.84511 4.93536 5.11452 5.20192 5.22888 5.32202 5.43633 5.55585 5.66638 6.03826 6.08548 6.14785 6.19193 6.36343 6.65731 6.90399 6.97681 6.99872 7.70992 8.34983 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.050033 B = 0.005420 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.499093 B = 5164.863287 C = 5395.811075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.028 3.972 3 Si 0.990 3.010 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.493 4.493 8 H 0.084 0.916 9 C 0.083 3.917 10 C -0.225 4.225 11 C -0.085 4.085 12 C 0.020 3.980 13 N -0.559 5.559 14 C 0.103 3.897 15 C -0.145 4.145 16 C 0.107 3.893 17 N -0.732 5.732 18 C 0.691 3.309 19 O -0.650 6.650 20 C -0.089 4.089 21 C -0.177 4.177 22 H 0.287 0.713 23 H 0.110 0.890 24 H 0.119 0.881 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.416 0.584 32 H 0.081 0.919 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -14.644 -6.377 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.522 4.522 8 H 0.102 0.898 9 C 0.080 3.920 10 C -0.245 4.245 11 C -0.105 4.105 12 C -0.072 4.072 13 N -0.291 5.291 14 C -0.018 4.018 15 C -0.183 4.183 16 C -0.016 4.016 17 N -0.390 5.390 18 C 0.393 3.607 19 O -0.532 6.532 20 C -0.109 4.109 21 C -0.197 4.197 22 H 0.098 0.902 23 H 0.128 0.872 24 H 0.136 0.864 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.155 0.845 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.254 0.746 32 H 0.100 0.900 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.651 -14.098 -6.121 15.383 hybrid contribution -0.368 0.999 0.294 1.105 sum -1.019 -13.099 -5.827 14.372 Atomic orbital electron populations 1.69948 1.09321 1.30509 1.36254 1.26905 0.95486 1.04979 0.91176 0.85046 0.79462 0.75675 0.78796 1.17518 1.18946 1.19299 1.19876 0.97154 0.91695 1.43491 0.89773 1.18026 0.91649 0.93512 0.88788 1.20875 1.04412 0.92816 1.06424 1.20568 0.95822 0.97651 0.96425 1.16832 0.98340 0.84877 1.07109 1.43908 1.13912 1.17669 1.53589 1.21945 0.96140 0.89605 0.94080 1.22241 0.96829 1.01370 0.97829 1.21857 0.98647 0.87979 0.93125 1.44946 1.19280 1.16960 1.57852 1.15954 0.81800 0.83091 0.79854 1.90931 1.70646 1.45250 1.46378 1.20543 0.97806 0.93214 0.99320 1.20848 1.00295 0.96105 1.02418 0.90239 0.87163 0.86351 0.90452 0.90135 0.84517 0.91772 0.86605 0.90215 0.74603 0.90026 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.71 10.97 21.82 0.24 -46.47 16 2 C 0.03 1.49 5.20 85.24 0.44 1.93 16 3 Si 0.99 39.33 29.58 68.60 2.03 41.36 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.49 -27.28 9.04 23.39 0.21 -27.07 16 8 H 0.08 4.39 7.88 -2.91 -0.02 4.36 16 9 C 0.08 4.68 5.54 -21.27 -0.12 4.56 16 10 C -0.23 -11.43 9.74 22.48 0.22 -11.21 16 11 C -0.08 -3.94 9.77 22.13 0.22 -3.73 16 12 C 0.02 0.97 4.63 38.56 0.18 1.15 16 13 N -0.56 -21.46 2.85 -648.91 -1.85 -23.31 16 14 C 0.10 2.62 6.39 86.47 0.55 3.17 16 15 C -0.14 -2.35 6.19 30.76 0.19 -2.16 16 16 C 0.11 1.62 7.21 86.48 0.62 2.24 16 17 N -0.73 -19.49 5.58 -479.86 -2.68 -22.17 16 18 C 0.69 27.75 8.05 179.46 1.44 29.20 16 19 O -0.65 -34.14 16.55 -3.96 -0.07 -34.21 16 20 C -0.09 -4.71 9.26 22.13 0.21 -4.50 16 21 C -0.18 -10.10 8.60 22.48 0.19 -9.91 16 22 H 0.29 14.55 8.30 -92.71 -0.77 13.78 16 23 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 24 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 2.07 8.04 -2.38 -0.02 2.05 16 27 H 0.14 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.12 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.42 9.85 8.88 -92.71 -0.82 9.02 16 32 H 0.08 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.10 5.93 6.30 -2.91 -0.02 5.91 16 Total: -1.00 -76.29 280.76 2.34 -73.96 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.30 Total: 27.15 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 4.36 Total: -16.32 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -4.29 Total: -91.94 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.07 Total: -34.21 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -76.29 2.34 -73.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.943 kcal (2) G-P(sol) polarization free energy of solvation -76.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds