Wall clock time and date at job start Mon Mar 30 2020 04:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00241 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00192 * 3 2 1 6 6 H 1.48494 * 109.47204 * 149.99711 * 3 2 1 7 7 C 1.39037 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00241 * 179.97438 * 7 2 1 9 9 N 1.36873 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00255 * 179.97438 * 9 7 2 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 C 1.47734 * 119.99967 * 180.27723 * 10 9 7 13 13 C 1.39489 * 119.98347 * 359.44912 * 12 10 9 14 14 C 1.37915 * 119.65939 * 179.74763 * 13 12 10 15 15 C 1.38191 * 120.03482 * 0.60068 * 14 13 12 16 16 C 1.38864 * 120.69785 * 359.74856 * 15 14 13 17 17 C 1.37573 * 119.81960 * 359.82392 * 16 15 14 18 18 C 1.50692 * 121.74090 * 180.52633 * 17 16 15 19 19 C 1.52899 * 109.97557 * 343.07204 * 18 17 16 20 20 N 1.47160 * 108.50059 * 50.28570 * 19 18 17 21 21 C 1.46625 * 110.24531 * 288.84336 * 20 19 18 22 22 H 0.97005 * 120.00002 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00008 * 0.02562 * 9 7 2 24 24 H 1.08012 * 120.17205 * 0.02562 * 13 12 10 25 25 H 1.08001 * 119.98728 * 180.31477 * 14 13 12 26 26 H 1.07992 * 119.65113 * 179.72679 * 15 14 13 27 27 H 1.08996 * 109.38553 * 103.22415 * 18 17 16 28 28 H 1.08998 * 109.39140 * 222.91457 * 18 17 16 29 29 H 1.08999 * 109.62308 * 290.58501 * 19 18 17 30 30 H 1.08999 * 109.63217 * 169.99752 * 19 18 17 31 31 H 1.00895 * 111.00252 * 165.42079 * 20 19 18 32 32 H 1.09002 * 109.26903 * 292.33133 * 21 20 19 33 33 H 1.09001 * 109.27350 * 172.85967 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5451 1.4403 0.7001 7 6 2.0088 -1.2041 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3245 -2.3895 -0.0005 10 6 1.9984 -3.5567 -0.0016 11 8 3.2144 -3.5566 -0.0021 12 6 1.2598 -4.8361 -0.0078 13 6 -0.1351 -4.8357 -0.0009 14 6 -0.8179 -6.0339 -0.0120 15 6 -0.1209 -7.2272 -0.0173 16 6 1.2677 -7.2371 -0.0168 17 6 1.9603 -6.0485 -0.0146 18 6 3.4666 -6.0087 -0.0258 19 6 4.0282 -7.3717 0.3799 20 7 3.3708 -8.4081 -0.4321 21 6 1.9737 -8.5679 -0.0166 22 1 -0.4850 0.8401 0.0004 23 1 0.3545 -2.3895 -0.0005 24 1 -0.6777 -3.9018 0.0085 25 1 -1.8979 -6.0398 -0.0119 26 1 -0.6619 -8.1619 -0.0216 27 1 3.8145 -5.7578 -1.0278 28 1 3.8138 -5.2508 0.6764 29 1 3.8264 -7.5511 1.4360 30 1 5.1031 -7.3930 0.2007 31 1 3.8682 -9.2838 -0.3725 32 1 1.9432 -8.9911 0.9874 33 1 1.4682 -9.2435 -0.7067 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125656296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:29 Heat of formation + Delta-G solvation = -11.051850 kcal Electronic energy + Delta-G solvation = -17435.805289 eV Core-core repulsion = 14653.813082 eV Total energy + Delta-G solvation = -2781.992207 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91778 -37.79191 -36.11954 -34.18225 -31.98836 -31.57432 -30.44629 -28.91262 -25.24076 -24.35289 -22.79853 -22.55697 -19.69783 -18.96408 -18.03556 -16.45375 -16.19930 -15.36661 -14.93489 -14.73519 -14.42382 -14.17674 -13.79475 -13.56874 -13.36467 -12.72613 -12.39397 -12.11538 -11.85887 -11.65866 -11.35095 -11.14870 -11.10068 -10.89796 -10.43696 -10.33326 -10.16010 -9.60434 -8.63283 -8.27046 -8.26304 -8.08872 -8.00005 -6.54773 -3.88127 1.44077 1.77202 3.14444 3.21839 3.27697 3.71241 4.09616 4.30616 4.48943 4.84240 4.93469 5.13412 5.29261 5.31131 5.43340 5.47052 5.50616 5.56630 5.70414 5.80979 6.04839 6.11875 6.35741 6.39805 6.43709 6.72993 6.80485 6.84415 7.05333 7.11486 7.34539 7.44098 7.47098 7.98033 8.52200 9.07173 9.43964 9.99061 10.62324 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.006010 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.461053 B = 4657.830108 C = 5394.726234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.295 4.295 8 H 0.108 0.892 9 N -0.544 5.544 10 C 0.467 3.533 11 O -0.590 6.590 12 C -0.101 4.101 13 C -0.103 4.103 14 C -0.130 4.130 15 C -0.117 4.117 16 C -0.098 4.098 17 C -0.022 4.022 18 C -0.076 4.076 19 C 0.050 3.950 20 N -0.686 5.686 21 C 0.103 3.897 22 H 0.275 0.725 23 H 0.393 0.607 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.339 0.661 32 H 0.038 0.962 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 -13.445 1.045 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.424 4.424 8 H 0.126 0.874 9 N -0.178 5.178 10 C 0.256 3.744 11 O -0.478 6.478 12 C -0.104 4.104 13 C -0.122 4.122 14 C -0.148 4.148 15 C -0.136 4.136 16 C -0.099 4.099 17 C -0.024 4.024 18 C -0.112 4.112 19 C -0.079 4.079 20 N -0.316 5.316 21 C -0.026 4.026 22 H 0.085 0.915 23 H 0.228 0.772 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.134 0.866 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.056 0.944 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.161 -12.789 0.526 12.801 hybrid contribution -0.394 0.391 0.793 0.968 sum -0.233 -12.398 1.318 12.470 Atomic orbital electron populations 1.69594 1.06142 1.28664 1.48733 1.25374 0.95678 1.00068 0.96893 0.85783 0.79269 0.80289 0.78567 1.20186 1.20771 1.19206 1.19825 0.93714 0.82153 1.46735 0.87426 1.41905 1.09484 1.04714 1.61720 1.17737 0.87482 0.83248 0.85982 1.90523 1.13177 1.86601 1.57514 1.20289 0.93361 0.94478 1.02301 1.21377 0.93558 0.98461 0.98816 1.20878 0.99510 0.92236 1.02154 1.20975 0.93200 0.97897 1.01505 1.19417 0.93384 0.93979 1.03073 1.19584 0.96230 0.90693 0.95888 1.20835 0.90312 0.95506 1.04585 1.22204 0.98434 0.92894 0.94416 1.60642 1.02369 1.11255 1.57329 1.20686 0.89180 0.94205 0.98504 0.91490 0.77184 0.85576 0.86118 0.86569 0.89887 0.87036 0.95081 0.90570 0.84389 0.94384 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.90 13.05 55.50 0.72 -23.17 16 2 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.29 -8.17 9.68 -15.01 -0.15 -8.32 16 8 H 0.11 3.09 7.15 -52.49 -0.38 2.72 16 9 N -0.54 -14.15 5.23 -11.87 -0.06 -14.21 16 10 C 0.47 11.65 7.68 -12.38 -0.10 11.55 16 11 O -0.59 -15.92 12.70 5.28 0.07 -15.85 16 12 C -0.10 -2.12 5.88 -104.88 -0.62 -2.73 16 13 C -0.10 -1.88 9.54 -39.23 -0.37 -2.25 16 14 C -0.13 -1.98 10.03 -39.72 -0.40 -2.37 16 15 C -0.12 -1.68 9.64 -39.37 -0.38 -2.06 16 16 C -0.10 -1.57 5.79 -104.66 -0.61 -2.17 16 17 C -0.02 -0.42 5.80 -104.20 -0.60 -1.03 16 18 C -0.08 -1.40 4.49 -27.94 -0.13 -1.53 16 19 C 0.05 0.70 6.59 -3.73 -0.02 0.68 16 20 N -0.69 -8.90 6.88 -115.16 -0.79 -9.69 16 21 C 0.10 1.31 6.34 -5.15 -0.03 1.28 16 22 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.39 9.77 5.91 -40.82 -0.24 9.53 16 24 H 0.13 2.27 6.39 -52.48 -0.34 1.94 16 25 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.08 1.66 8.08 -51.93 -0.42 1.24 16 28 H 0.11 2.33 5.98 -51.93 -0.31 2.02 16 29 H 0.03 0.43 8.05 -51.93 -0.42 0.01 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.34 3.35 8.90 -39.29 -0.35 3.00 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 LS Contribution 274.98 15.07 4.14 4.14 Total: -1.00 -30.27 274.98 -8.14 -38.41 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -3.70 Total: 13.19 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.50 Total: -8.45 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.13 Total: -47.07 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.07 Total: -15.85 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.27 -8.14 -38.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125656296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.361 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds