Wall clock time and date at job start Mon Mar 30 2020 04:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00241 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00192 * 3 2 1 6 6 H 1.48494 * 109.47204 * 149.99711 * 3 2 1 7 7 C 1.39037 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00241 * 179.97438 * 7 2 1 9 9 N 1.36873 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00255 * 179.97438 * 9 7 2 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 C 1.47734 * 119.99967 * 180.27723 * 10 9 7 13 13 C 1.39489 * 119.98347 * 359.44912 * 12 10 9 14 14 C 1.37915 * 119.65939 * 179.74763 * 13 12 10 15 15 C 1.38191 * 120.03482 * 0.60068 * 14 13 12 16 16 C 1.38864 * 120.69785 * 359.74856 * 15 14 13 17 17 C 1.37573 * 119.81960 * 359.82392 * 16 15 14 18 18 C 1.50692 * 121.74090 * 180.52633 * 17 16 15 19 19 C 1.52899 * 109.97557 * 343.07204 * 18 17 16 20 20 N 1.47160 * 108.50059 * 50.28570 * 19 18 17 21 21 C 1.46625 * 110.24531 * 288.84336 * 20 19 18 22 22 H 0.97005 * 120.00002 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00008 * 0.02562 * 9 7 2 24 24 H 1.08012 * 120.17205 * 0.02562 * 13 12 10 25 25 H 1.08001 * 119.98728 * 180.31477 * 14 13 12 26 26 H 1.07992 * 119.65113 * 179.72679 * 15 14 13 27 27 H 1.08996 * 109.38553 * 103.22415 * 18 17 16 28 28 H 1.08998 * 109.39140 * 222.91457 * 18 17 16 29 29 H 1.08999 * 109.62308 * 290.58501 * 19 18 17 30 30 H 1.08999 * 109.63217 * 169.99752 * 19 18 17 31 31 H 1.00895 * 111.00252 * 165.42079 * 20 19 18 32 32 H 1.09002 * 109.26903 * 292.33133 * 21 20 19 33 33 H 1.09001 * 109.27350 * 172.85967 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5451 1.4403 0.7001 7 6 2.0088 -1.2041 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3245 -2.3895 -0.0005 10 6 1.9984 -3.5567 -0.0016 11 8 3.2144 -3.5566 -0.0021 12 6 1.2598 -4.8361 -0.0078 13 6 -0.1351 -4.8357 -0.0009 14 6 -0.8179 -6.0339 -0.0120 15 6 -0.1209 -7.2272 -0.0173 16 6 1.2677 -7.2371 -0.0168 17 6 1.9603 -6.0485 -0.0146 18 6 3.4666 -6.0087 -0.0258 19 6 4.0282 -7.3717 0.3799 20 7 3.3708 -8.4081 -0.4321 21 6 1.9737 -8.5679 -0.0166 22 1 -0.4850 0.8401 0.0004 23 1 0.3545 -2.3895 -0.0005 24 1 -0.6777 -3.9018 0.0085 25 1 -1.8979 -6.0398 -0.0119 26 1 -0.6619 -8.1619 -0.0216 27 1 3.8145 -5.7578 -1.0278 28 1 3.8138 -5.2508 0.6764 29 1 3.8264 -7.5511 1.4360 30 1 5.1031 -7.3930 0.2007 31 1 3.8682 -9.2838 -0.3725 32 1 1.9432 -8.9911 0.9874 33 1 1.4682 -9.2435 -0.7067 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125656296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:28 Heat of formation + Delta-G solvation = -32.890407 kcal Electronic energy + Delta-G solvation = -17436.752280 eV Core-core repulsion = 14653.813082 eV Total energy + Delta-G solvation = -2782.939198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37608 -39.52994 -37.36567 -36.16799 -33.52836 -33.34075 -31.80422 -30.26687 -27.17101 -25.55902 -24.16581 -24.01436 -21.33091 -20.41282 -19.96727 -18.04704 -17.48425 -16.86830 -16.49000 -16.23474 -15.95172 -15.59490 -15.33687 -15.10060 -14.97764 -13.99691 -13.93345 -13.62433 -13.42678 -13.06763 -12.94990 -12.75576 -12.51257 -12.44381 -12.13570 -12.10044 -11.58443 -11.46189 -10.17259 -10.12503 -9.80840 -9.55477 -9.28075 -8.56090 -6.01076 0.02079 0.44212 1.38668 1.39213 1.53022 2.09339 2.25412 2.83581 3.11744 3.28489 3.32462 3.73469 3.87193 4.06764 4.14333 4.27171 4.37016 4.47439 4.51821 4.57875 4.70052 4.91241 4.94922 5.02857 5.08682 5.29462 5.33019 5.49008 5.51059 5.70444 5.91596 5.96380 6.08517 6.50400 6.59442 7.02251 7.43771 8.00567 8.61611 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.006010 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.461053 B = 4657.830108 C = 5394.726234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.011 4.011 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.084 0.916 9 N -0.557 5.557 10 C 0.464 3.536 11 O -0.621 6.621 12 C -0.140 4.140 13 C -0.111 4.111 14 C -0.123 4.123 15 C -0.095 4.095 16 C -0.100 4.100 17 C -0.044 4.044 18 C -0.073 4.073 19 C 0.061 3.939 20 N -0.694 5.694 21 C 0.102 3.898 22 H 0.282 0.718 23 H 0.395 0.605 24 H 0.119 0.881 25 H 0.159 0.841 26 H 0.167 0.833 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.361 0.639 32 H 0.061 0.939 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -16.167 1.127 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.212 4.212 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.102 0.898 9 N -0.192 5.192 10 C 0.254 3.746 11 O -0.510 6.510 12 C -0.143 4.143 13 C -0.131 4.131 14 C -0.141 4.141 15 C -0.114 4.114 16 C -0.101 4.101 17 C -0.045 4.045 18 C -0.110 4.110 19 C -0.069 4.069 20 N -0.327 5.327 21 C -0.026 4.026 22 H 0.092 0.908 23 H 0.231 0.769 24 H 0.137 0.863 25 H 0.177 0.823 26 H 0.184 0.816 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.181 0.819 32 H 0.079 0.921 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.281 -15.548 0.607 15.613 hybrid contribution -0.002 1.030 0.756 1.277 sum -1.283 -14.519 1.362 14.639 Atomic orbital electron populations 1.69654 1.07091 1.29824 1.48859 1.26196 0.96615 1.02731 0.95674 0.84823 0.77879 0.76146 0.78848 1.19394 1.19144 1.19546 1.19789 0.93054 0.83785 1.49947 0.89792 1.41912 1.09472 1.04743 1.63081 1.18570 0.87498 0.84559 0.83988 1.90493 1.14782 1.87526 1.58221 1.20122 0.94593 0.93063 1.06498 1.21454 0.92445 0.99960 0.99207 1.21313 1.01406 0.91089 1.00247 1.21558 0.92594 0.99507 0.97706 1.19918 0.94559 0.94243 1.01342 1.19800 0.96351 0.91431 0.96964 1.20624 0.90906 0.97534 1.01944 1.22008 0.99105 0.90863 0.94876 1.60529 1.02967 1.12047 1.57128 1.20853 0.88676 0.92449 1.00656 0.90850 0.76924 0.86345 0.82327 0.81575 0.92756 0.90660 0.94296 0.89149 0.81883 0.92086 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.14 13.05 21.68 0.28 -49.86 16 2 C -0.01 -0.62 5.50 84.95 0.47 -0.16 16 3 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.34 -19.83 9.68 84.10 0.81 -19.02 16 8 H 0.08 5.21 7.15 -2.91 -0.02 5.19 16 9 N -0.56 -30.93 5.23 -309.73 -1.62 -32.55 16 10 C 0.46 24.85 7.68 86.75 0.67 25.52 16 11 O -0.62 -36.34 12.70 -4.01 -0.05 -36.39 16 12 C -0.14 -6.09 5.88 -20.03 -0.12 -6.21 16 13 C -0.11 -4.07 9.54 22.49 0.21 -3.86 16 14 C -0.12 -3.32 10.03 22.18 0.22 -3.10 16 15 C -0.10 -2.27 9.64 22.41 0.22 -2.05 16 16 C -0.10 -2.89 5.79 -19.89 -0.12 -3.00 16 17 C -0.04 -1.68 5.80 -19.59 -0.11 -1.80 16 18 C -0.07 -2.82 4.49 29.81 0.13 -2.69 16 19 C 0.06 1.66 6.59 86.22 0.57 2.23 16 20 N -0.69 -15.83 6.88 -518.24 -3.56 -19.39 16 21 C 0.10 2.12 6.34 85.59 0.54 2.66 16 22 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 23 H 0.40 20.92 5.91 -92.71 -0.55 20.37 16 24 H 0.12 4.41 6.39 -2.90 -0.02 4.39 16 25 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 26 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 27 H 0.05 2.34 8.08 -2.39 -0.02 2.32 16 28 H 0.08 3.42 5.98 -2.39 -0.01 3.40 16 29 H 0.04 1.01 8.05 -2.39 -0.02 0.99 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.36 5.71 8.90 -89.70 -0.80 4.91 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.74 8.13 -2.39 -0.02 1.72 16 Total: -1.00 -70.95 274.98 0.38 -70.57 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -0.19 Total: 33.77 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 3.50 Total: -11.47 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -4.90 Total: -101.80 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.05 Total: -36.39 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.95 0.38 -70.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125656296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.678 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds