Wall clock time and date at job start Mon Mar 30 2020 04:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48496 * 109.47549 * 270.00056 * 3 2 1 5 5 H 1.48500 * 109.47141 * 30.00703 * 3 2 1 6 6 H 1.48506 * 109.47082 * 150.00190 * 3 2 1 7 7 C 1.38952 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99698 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00343 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99674 * 5.17384 * 10 9 7 12 12 C 1.50690 * 120.00479 * 185.17543 * 10 9 7 13 13 C 1.50701 * 115.56565 * 90.26305 * 12 10 9 14 14 C 1.38286 * 119.92866 * 209.38480 * 13 12 10 15 15 C 1.38102 * 120.07467 * 179.72221 * 14 13 12 16 16 C 1.38914 * 119.92292 * 0.54914 * 15 14 13 17 17 N 1.39676 * 120.07079 * 179.70188 * 16 15 14 18 18 C 1.38902 * 119.85059 * 359.71969 * 16 15 14 19 19 C 1.38108 * 119.92880 * 0.02562 * 18 16 15 20 20 C 1.53001 * 117.49815 * 304.57657 * 12 10 9 21 21 C 1.53001 * 60.00029 * 252.50684 * 20 12 10 22 22 H 0.97005 * 120.00281 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00019 * 0.02562 * 9 7 2 24 24 H 1.07996 * 119.96112 * 359.97046 * 14 13 12 25 25 H 1.08001 * 120.03665 * 180.26852 * 15 14 13 26 26 H 0.97001 * 119.99985 * 180.02562 * 17 16 15 27 27 H 0.96997 * 120.00125 * 0.02562 * 17 16 15 28 28 H 1.08006 * 120.03548 * 179.97438 * 18 16 15 29 29 H 1.07996 * 119.96586 * 180.02562 * 19 18 16 30 30 H 1.09005 * 117.50252 * 145.01805 * 20 12 10 31 31 H 1.09000 * 117.49761 * 359.97438 * 20 12 10 32 32 H 1.08999 * 117.49529 * 107.48393 * 21 20 12 33 33 H 1.09001 * 117.49765 * 252.48470 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0466 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2065 -3.5600 0.0942 12 6 1.2485 -4.8602 -0.1183 13 6 1.0369 -5.3641 -1.5227 14 6 -0.0731 -6.1336 -1.8197 15 6 -0.2729 -6.5921 -3.1070 16 6 0.6486 -6.2892 -4.1014 17 7 0.4527 -6.7566 -5.4030 18 6 1.7653 -5.5207 -3.7983 19 6 1.9563 -5.0610 -2.5101 20 6 0.1445 -5.1353 0.9047 21 6 1.4662 -5.9022 0.9807 22 1 -0.4851 0.8401 0.0004 23 1 0.3534 -2.3906 -0.0005 24 1 -0.7865 -6.3728 -1.0451 25 1 -1.1423 -7.1894 -3.3393 26 1 1.0970 -6.5447 -6.0965 27 1 -0.3276 -7.2930 -5.6134 28 1 2.4838 -5.2838 -4.5690 29 1 2.8241 -4.4631 -2.2739 30 1 -0.7349 -5.6807 0.5619 31 1 -0.0399 -4.3744 1.6631 32 1 2.1511 -5.6456 1.7889 33 1 1.4564 -6.9522 0.6883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163005383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:31 Heat of formation + Delta-G solvation = 10.149807 kcal Electronic energy + Delta-G solvation = -17258.256785 eV Core-core repulsion = 14477.183950 eV Total energy + Delta-G solvation = -2781.072834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74023 -38.14763 -36.00984 -33.86613 -33.73319 -31.08992 -30.56470 -28.31736 -25.46386 -23.38769 -22.47631 -21.76964 -21.01191 -18.57268 -17.83666 -17.03722 -16.68744 -16.01266 -15.11722 -14.64617 -14.30151 -13.94197 -13.68995 -13.33751 -13.07501 -12.93040 -12.57731 -12.35137 -11.59298 -11.43016 -11.07646 -11.07160 -10.92794 -10.57963 -10.37408 -10.20613 -10.05026 -9.54487 -9.47763 -8.59935 -8.31098 -7.92984 -7.17906 -6.38696 -3.79347 1.76160 1.87388 3.19335 3.28041 3.34108 3.89276 3.96499 4.00016 4.18393 4.45359 4.91980 5.04698 5.16183 5.26007 5.29347 5.42198 5.70075 5.72479 5.89458 6.00047 6.01439 6.12991 6.27393 6.40150 6.49640 6.54360 6.59416 6.81675 7.13763 7.16704 7.57392 7.64295 7.82680 8.09487 8.64957 9.19912 9.59872 10.10798 10.78725 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.006431 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.764162 B = 4352.629312 C = 4870.000416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.551 5.551 10 C 0.478 3.522 11 O -0.592 6.592 12 C -0.091 4.091 13 C -0.082 4.082 14 C -0.073 4.073 15 C -0.199 4.199 16 C 0.203 3.797 17 N -0.884 5.884 18 C -0.194 4.194 19 C -0.051 4.051 20 C -0.173 4.173 21 C -0.145 4.145 22 H 0.272 0.728 23 H 0.395 0.605 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.395 0.605 27 H 0.394 0.606 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -12.075 -6.082 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.186 5.186 10 C 0.263 3.737 11 O -0.478 6.478 12 C -0.095 4.095 13 C -0.085 4.085 14 C -0.091 4.091 15 C -0.222 4.222 16 C 0.100 3.900 17 N -0.424 5.424 18 C -0.217 4.217 19 C -0.070 4.070 20 C -0.210 4.210 21 C -0.183 4.183 22 H 0.082 0.918 23 H 0.228 0.772 24 H 0.140 0.860 25 H 0.134 0.866 26 H 0.222 0.778 27 H 0.221 0.779 28 H 0.135 0.865 29 H 0.147 0.853 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.655 -11.858 -5.976 13.542 hybrid contribution -0.313 0.791 -0.456 0.965 sum -2.968 -11.067 -6.432 13.140 Atomic orbital electron populations 1.69627 1.05942 1.28151 1.50149 1.25270 0.95612 0.99699 0.97218 0.85872 0.79272 0.80840 0.78394 1.20396 1.20902 1.19376 1.19731 0.93362 0.82267 1.47733 0.87924 1.41838 1.09387 1.04290 1.63043 1.18704 0.87270 0.83432 0.84255 1.90510 1.14054 1.86978 1.56253 1.20019 1.03060 0.96910 0.89492 1.18610 0.96092 1.00935 0.92839 1.20734 0.96408 0.96225 0.95751 1.20413 1.00825 1.07946 0.92986 1.17755 0.93895 0.93188 0.85122 1.42389 1.30057 1.61928 1.07993 1.20536 0.98918 1.04737 0.97475 1.20936 0.98317 0.96216 0.91525 1.23155 0.92547 1.03619 1.01646 1.22926 0.99242 0.96259 0.99869 0.91848 0.77182 0.86037 0.86650 0.77761 0.77876 0.86505 0.85285 0.88386 0.88155 0.88384 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 8 H 0.10 3.04 7.17 -52.49 -0.38 2.66 16 9 N -0.55 -14.53 5.28 -10.97 -0.06 -14.59 16 10 C 0.48 11.87 5.83 -10.99 -0.06 11.80 16 11 O -0.59 -16.67 16.32 5.54 0.09 -16.57 16 12 C -0.09 -1.79 2.32 -156.81 -0.36 -2.15 16 13 C -0.08 -1.51 5.49 -104.59 -0.57 -2.08 16 14 C -0.07 -1.11 9.34 -39.61 -0.37 -1.48 16 15 C -0.20 -2.75 9.90 -39.38 -0.39 -3.14 16 16 C 0.20 2.82 6.75 -83.79 -0.57 2.26 16 17 N -0.88 -8.78 9.09 32.41 0.29 -8.48 16 18 C -0.19 -3.06 9.90 -39.38 -0.39 -3.45 16 19 C -0.05 -0.96 9.31 -39.61 -0.37 -1.33 16 20 C -0.17 -2.80 9.56 -26.73 -0.26 -3.06 16 21 C -0.15 -2.42 9.90 -26.73 -0.26 -2.69 16 22 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 23 H 0.39 10.16 7.89 -40.82 -0.32 9.84 16 24 H 0.12 1.59 5.95 -52.49 -0.31 1.28 16 25 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.39 3.27 8.84 -40.82 -0.36 2.91 16 27 H 0.39 3.05 8.84 -40.82 -0.36 2.69 16 28 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 29 H 0.13 2.71 7.05 -52.49 -0.37 2.34 16 30 H 0.10 1.32 6.10 -51.93 -0.32 1.00 16 31 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 288.79 15.07 4.35 4.35 Total: -1.00 -32.06 288.79 -7.14 -39.19 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -3.67 Total: 17.45 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -3.85 Total: -13.47 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.96 Total: -47.20 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.06 -7.14 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163005383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.345 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds