Wall clock time and date at job start Mon Mar 30 2020 04:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48496 * 109.47549 * 270.00056 * 3 2 1 5 5 H 1.48500 * 109.47141 * 30.00703 * 3 2 1 6 6 H 1.48506 * 109.47082 * 150.00190 * 3 2 1 7 7 C 1.38952 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99698 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00343 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99674 * 5.17384 * 10 9 7 12 12 C 1.50690 * 120.00479 * 185.17543 * 10 9 7 13 13 C 1.50701 * 115.56565 * 90.26305 * 12 10 9 14 14 C 1.38286 * 119.92866 * 209.38480 * 13 12 10 15 15 C 1.38102 * 120.07467 * 179.72221 * 14 13 12 16 16 C 1.38914 * 119.92292 * 0.54914 * 15 14 13 17 17 N 1.39676 * 120.07079 * 179.70188 * 16 15 14 18 18 C 1.38902 * 119.85059 * 359.71969 * 16 15 14 19 19 C 1.38108 * 119.92880 * 0.02562 * 18 16 15 20 20 C 1.53001 * 117.49815 * 304.57657 * 12 10 9 21 21 C 1.53001 * 60.00029 * 252.50684 * 20 12 10 22 22 H 0.97005 * 120.00281 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00019 * 0.02562 * 9 7 2 24 24 H 1.07996 * 119.96112 * 359.97046 * 14 13 12 25 25 H 1.08001 * 120.03665 * 180.26852 * 15 14 13 26 26 H 0.97001 * 119.99985 * 180.02562 * 17 16 15 27 27 H 0.96997 * 120.00125 * 0.02562 * 17 16 15 28 28 H 1.08006 * 120.03548 * 179.97438 * 18 16 15 29 29 H 1.07996 * 119.96586 * 180.02562 * 19 18 16 30 30 H 1.09005 * 117.50252 * 145.01805 * 20 12 10 31 31 H 1.09000 * 117.49761 * 359.97438 * 20 12 10 32 32 H 1.08999 * 117.49529 * 107.48393 * 21 20 12 33 33 H 1.09001 * 117.49765 * 252.48470 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0466 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2065 -3.5600 0.0942 12 6 1.2485 -4.8602 -0.1183 13 6 1.0369 -5.3641 -1.5227 14 6 -0.0731 -6.1336 -1.8197 15 6 -0.2729 -6.5921 -3.1070 16 6 0.6486 -6.2892 -4.1014 17 7 0.4527 -6.7566 -5.4030 18 6 1.7653 -5.5207 -3.7983 19 6 1.9563 -5.0610 -2.5101 20 6 0.1445 -5.1353 0.9047 21 6 1.4662 -5.9022 0.9807 22 1 -0.4851 0.8401 0.0004 23 1 0.3534 -2.3906 -0.0005 24 1 -0.7865 -6.3728 -1.0451 25 1 -1.1423 -7.1894 -3.3393 26 1 1.0970 -6.5447 -6.0965 27 1 -0.3276 -7.2930 -5.6134 28 1 2.4838 -5.2838 -4.5690 29 1 2.8241 -4.4631 -2.2739 30 1 -0.7349 -5.6807 0.5619 31 1 -0.0399 -4.3744 1.6631 32 1 2.1511 -5.6456 1.7889 33 1 1.4564 -6.9522 0.6883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163005383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:30 Heat of formation + Delta-G solvation = -12.337390 kcal Electronic energy + Delta-G solvation = -17259.231903 eV Core-core repulsion = 14477.183950 eV Total energy + Delta-G solvation = -2782.047952 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.19399 -39.69481 -37.55156 -35.97171 -34.82904 -33.20202 -31.75677 -29.46164 -27.46958 -24.89602 -23.74661 -23.07921 -22.45640 -20.40235 -19.77017 -18.30482 -17.85772 -17.37148 -16.83628 -16.35433 -15.87941 -15.53430 -15.19707 -14.78490 -14.55567 -14.19344 -14.06020 -13.80485 -13.54407 -12.96050 -12.84626 -12.47679 -12.35751 -12.22734 -12.07616 -11.77977 -11.56874 -11.41044 -10.78768 -10.28525 -10.04443 -9.80543 -8.49255 -8.25010 -5.98621 0.56403 0.65831 1.35655 1.39189 1.52828 1.99167 2.27554 2.71610 3.03451 3.07711 3.17333 3.29094 3.70029 4.02085 4.04116 4.15494 4.24943 4.38243 4.51982 4.74323 4.77333 4.87104 4.98436 5.00574 5.18747 5.26643 5.37478 5.42882 5.58495 5.86442 5.97440 6.02225 6.55998 6.65282 7.08122 7.08816 7.53298 8.07903 8.68577 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.006431 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.764162 B = 4352.629312 C = 4870.000416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.560 5.560 10 C 0.477 3.523 11 O -0.637 6.637 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.067 4.067 15 C -0.194 4.194 16 C 0.211 3.789 17 N -0.866 5.866 18 C -0.206 4.206 19 C -0.084 4.084 20 C -0.149 4.149 21 C -0.136 4.136 22 H 0.279 0.721 23 H 0.396 0.604 24 H 0.149 0.851 25 H 0.153 0.847 26 H 0.404 0.596 27 H 0.409 0.591 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 -13.458 -7.087 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.194 5.194 10 C 0.265 3.735 11 O -0.525 6.525 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.086 4.086 15 C -0.216 4.216 16 C 0.105 3.895 17 N -0.407 5.407 18 C -0.229 4.229 19 C -0.103 4.103 20 C -0.186 4.186 21 C -0.173 4.173 22 H 0.089 0.911 23 H 0.230 0.770 24 H 0.167 0.833 25 H 0.171 0.829 26 H 0.234 0.766 27 H 0.239 0.761 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.155 0.845 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.929 -13.268 -7.016 15.797 hybrid contribution 0.384 1.154 -0.224 1.237 sum -4.546 -12.113 -7.240 14.826 Atomic orbital electron populations 1.69688 1.06897 1.29437 1.49703 1.26087 0.96570 1.02448 0.95937 0.84915 0.77918 0.76661 0.78745 1.19537 1.19145 1.19727 1.19709 0.92675 0.84059 1.50443 0.90433 1.41889 1.09282 1.04478 1.63760 1.19675 0.87087 0.84940 0.81827 1.90456 1.16373 1.88032 1.57648 1.19853 1.05454 0.94857 0.91865 1.18592 0.97620 1.02976 0.91627 1.20969 0.95298 0.95036 0.97258 1.20831 1.01505 1.07209 0.92100 1.17827 0.92877 0.91981 0.86788 1.42349 1.30717 1.60948 1.06662 1.20605 1.00336 1.05420 0.96490 1.20762 0.97978 0.97860 0.93660 1.23283 0.93224 1.02839 0.99222 1.23043 0.99191 0.97224 0.97868 0.91130 0.77033 0.83304 0.82942 0.76650 0.76075 0.85547 0.89628 0.84529 0.89240 0.89912 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 13.05 21.66 0.28 -50.77 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 44.10 29.55 68.60 2.03 46.13 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.34 -20.25 9.68 84.04 0.81 -19.44 16 8 H 0.08 4.91 7.17 -2.91 -0.02 4.89 16 9 N -0.56 -30.98 5.28 -306.99 -1.62 -32.60 16 10 C 0.48 25.03 5.83 87.65 0.51 25.54 16 11 O -0.64 -38.45 16.32 -3.08 -0.05 -38.50 16 12 C -0.12 -4.64 2.32 -53.68 -0.12 -4.77 16 13 C -0.11 -3.84 5.49 -19.84 -0.11 -3.95 16 14 C -0.07 -1.85 9.34 22.25 0.21 -1.65 16 15 C -0.19 -4.58 9.90 22.40 0.22 -4.36 16 16 C 0.21 5.28 6.75 38.21 0.26 5.54 16 17 N -0.87 -14.08 9.09 -51.37 -0.47 -14.55 16 18 C -0.21 -6.45 9.90 22.40 0.22 -6.23 16 19 C -0.08 -3.28 9.31 22.25 0.21 -3.07 16 20 C -0.15 -4.59 9.56 30.60 0.29 -4.30 16 21 C -0.14 -4.41 9.90 30.60 0.30 -4.11 16 22 H 0.28 14.42 8.31 -92.70 -0.77 13.65 16 23 H 0.40 21.16 7.89 -92.71 -0.73 20.42 16 24 H 0.15 3.18 5.95 -2.91 -0.02 3.16 16 25 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 26 H 0.40 5.43 8.84 -92.71 -0.82 4.61 16 27 H 0.41 4.50 8.84 -92.71 -0.82 3.69 16 28 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.09 3.99 7.05 -2.91 -0.02 3.97 16 30 H 0.14 3.12 6.10 -2.38 -0.01 3.10 16 31 H 0.09 2.95 8.14 -2.39 -0.02 2.94 16 32 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -73.55 288.79 2.24 -71.31 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -1.20 Total: 39.87 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 3.27 Total: -20.89 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -1.81 Total: -97.91 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.05 Total: -38.50 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -73.55 2.24 -71.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163005383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.974 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds