Wall clock time and date at job start Mon Mar 30 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99954 * 2 1 4 4 H 1.48494 * 109.47162 * 240.00246 * 3 2 1 5 5 H 1.48506 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46828 * 120.00199 * 3 2 1 7 7 C 1.37879 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99715 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46738 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99816 * 180.02562 * 10 9 7 12 12 O 1.21552 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.47860 * 120.00043 * 180.02562 * 11 10 9 14 14 C 1.39615 * 120.04286 * 0.02562 * 13 11 10 15 15 C 1.37923 * 119.69393 * 179.97438 * 14 13 11 16 16 C 1.38344 * 120.34953 * 0.02562 * 15 14 13 17 17 C 1.38717 * 120.70449 * 359.67798 * 16 15 14 18 18 C 1.39188 * 120.04431 * 180.02562 * 13 11 10 19 19 N 1.39642 * 111.63718 * 180.36895 * 17 16 15 20 20 C 1.46517 * 110.08788 * 0.27062 * 19 17 16 21 21 C 1.51274 * 130.79611 * 179.97438 * 16 15 14 22 22 H 0.97001 * 119.99779 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47308 * 60.00258 * 9 7 2 24 24 H 1.09007 * 109.46916 * 300.00160 * 9 7 2 25 25 H 0.97000 * 119.99978 * 0.02562 * 10 9 7 26 26 H 1.07996 * 120.15070 * 359.96067 * 14 13 11 27 27 H 1.07995 * 119.82265 * 179.97438 * 15 14 13 28 28 H 1.08002 * 119.91679 * 0.02562 * 18 13 11 29 29 H 0.96997 * 124.95719 * 180.29891 * 19 17 16 30 30 H 1.08999 * 110.29120 * 118.93828 * 20 19 17 31 31 H 1.09001 * 110.29816 * 240.96557 * 20 19 17 32 32 H 1.08994 * 110.42190 * 298.77260 * 21 16 15 33 33 H 1.08999 * 110.41621 * 61.23772 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5588 -5.1055 -0.0011 13 6 2.7146 -6.0072 -0.0005 14 6 4.0875 -5.7532 0.0011 15 6 4.9773 -6.8069 0.0022 16 6 4.5162 -8.1113 0.0011 17 6 3.1556 -8.3815 0.0057 18 6 2.2517 -7.3199 -0.0016 19 7 2.9035 -9.7549 0.0120 20 6 4.1660 -10.4983 0.0184 21 6 5.2664 -9.4248 0.0014 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 3.1567 -3.4353 -0.0002 26 1 4.4509 -4.7362 0.0013 27 1 6.0397 -6.6128 0.0030 28 1 1.1897 -7.5165 -0.0032 29 1 2.0212 -10.1580 0.0118 30 1 4.2388 -11.1119 0.9164 31 1 4.2420 -11.1222 -0.8721 32 1 5.8830 -9.5109 -0.8933 33 1 5.8808 -9.5116 0.8975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166898941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:21 Heat of formation + Delta-G solvation = -9.601613 kcal Electronic energy + Delta-G solvation = -16664.154741 eV Core-core repulsion = 13882.225420 eV Total energy + Delta-G solvation = -2781.929320 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37823 -38.67073 -35.88913 -34.21282 -32.32559 -31.98483 -29.58004 -28.82997 -27.08111 -23.80772 -22.35642 -22.06187 -21.56747 -19.55593 -17.97738 -16.78834 -15.77667 -15.74867 -15.61450 -15.19286 -14.63426 -14.28649 -13.80130 -13.57579 -13.47996 -12.70751 -12.54099 -12.31382 -12.25752 -11.96908 -11.71370 -11.66036 -10.98019 -10.90258 -10.85550 -10.29525 -10.12575 -9.38936 -9.12785 -8.71976 -8.66823 -7.84845 -7.37825 -6.14030 -4.21012 1.13908 1.63483 3.26930 3.27712 3.32321 3.34021 3.38053 4.13369 4.24727 4.40190 4.48351 4.52546 4.87067 5.03770 5.22007 5.28527 5.29076 5.45033 5.51411 5.60586 5.68034 5.78462 6.01272 6.36151 6.53686 6.57054 6.66252 7.16633 7.34392 7.45276 7.54501 7.69613 7.71828 7.99309 8.64624 8.80043 9.10973 9.45333 10.96222 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051873 B = 0.004196 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.645988 B = 6671.566990 C = 7185.334300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.703 5.703 11 C 0.539 3.461 12 O -0.553 6.553 13 C -0.076 4.076 14 C -0.138 4.138 15 C -0.070 4.070 16 C -0.163 4.163 17 C 0.183 3.817 18 C -0.124 4.124 19 N -0.750 5.750 20 C 0.120 3.880 21 C -0.084 4.084 22 H 0.266 0.734 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.391 0.609 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.412 0.588 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.774 -18.383 0.019 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.351 5.351 11 C 0.324 3.676 12 O -0.434 6.434 13 C -0.080 4.080 14 C -0.159 4.159 15 C -0.088 4.088 16 C -0.168 4.168 17 C 0.081 3.919 18 C -0.148 4.148 19 N -0.384 5.384 20 C -0.004 4.004 21 C -0.121 4.121 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.225 0.775 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.249 0.751 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.807 -18.502 0.021 21.427 hybrid contribution 0.462 0.830 0.001 0.950 sum 11.269 -17.672 0.022 20.959 Atomic orbital electron populations 1.69970 1.06117 1.27410 1.48825 1.24951 0.94915 0.99435 0.94678 0.86464 0.79407 0.82268 0.78706 1.20037 1.21086 1.20042 1.21190 0.93265 0.90425 1.53347 0.91884 1.19151 0.88315 0.81818 0.97911 1.46416 1.11306 1.05905 1.71504 1.18272 0.87940 0.83340 0.78053 1.90716 1.16340 1.84980 1.51326 1.19856 0.93684 0.93415 1.01022 1.21075 0.91962 0.99188 1.03687 1.20217 0.99439 0.90288 0.98872 1.19997 0.93157 0.94511 1.09116 1.18193 0.93561 0.84794 0.95336 1.20395 0.99414 0.89744 1.05213 1.44662 1.07664 1.02383 1.83677 1.21724 0.83329 0.94358 1.01021 1.21030 0.97222 0.90818 1.03013 0.92389 0.95319 0.95330 0.77475 0.85281 0.85854 0.85190 0.75068 0.91724 0.91872 0.89778 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 10 N -0.70 -15.61 5.50 -62.42 -0.34 -15.96 16 11 C 0.54 11.76 7.77 -12.32 -0.10 11.66 16 12 O -0.55 -14.12 16.33 5.32 0.09 -14.04 16 13 C -0.08 -1.32 5.86 -105.09 -0.62 -1.94 16 14 C -0.14 -1.99 9.54 -39.18 -0.37 -2.37 16 15 C -0.07 -0.85 10.02 -39.66 -0.40 -1.24 16 16 C -0.16 -1.96 6.23 -104.12 -0.65 -2.61 16 17 C 0.18 2.45 7.02 -83.68 -0.59 1.87 16 18 C -0.12 -1.99 9.62 -38.78 -0.37 -2.37 16 19 N -0.75 -7.69 6.53 -58.15 -0.38 -8.07 16 20 C 0.12 0.93 7.96 -3.65 -0.03 0.90 16 21 C -0.08 -0.70 6.94 -27.22 -0.19 -0.89 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 25 H 0.39 7.45 6.35 -40.82 -0.26 7.19 16 26 H 0.13 1.68 6.40 -52.49 -0.34 1.34 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.13 2.15 7.63 -52.49 -0.40 1.75 16 29 H 0.41 3.52 8.96 -40.82 -0.37 3.16 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -33.26 285.79 -8.22 -41.49 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.85 Total: 5.77 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.76 Total: -3.85 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.01 Total: -49.64 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.26 -8.22 -41.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166898941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.885 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds