Wall clock time and date at job start Mon Mar 30 2020 04:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99954 * 2 1 4 4 H 1.48494 * 109.47162 * 240.00246 * 3 2 1 5 5 H 1.48506 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46828 * 120.00199 * 3 2 1 7 7 C 1.37879 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99715 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46738 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99816 * 180.02562 * 10 9 7 12 12 O 1.21552 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.47860 * 120.00043 * 180.02562 * 11 10 9 14 14 C 1.39615 * 120.04286 * 0.02562 * 13 11 10 15 15 C 1.37923 * 119.69393 * 179.97438 * 14 13 11 16 16 C 1.38344 * 120.34953 * 0.02562 * 15 14 13 17 17 C 1.38717 * 120.70449 * 359.67798 * 16 15 14 18 18 C 1.39188 * 120.04431 * 180.02562 * 13 11 10 19 19 N 1.39642 * 111.63718 * 180.36895 * 17 16 15 20 20 C 1.46517 * 110.08788 * 0.27062 * 19 17 16 21 21 C 1.51274 * 130.79611 * 179.97438 * 16 15 14 22 22 H 0.97001 * 119.99779 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47308 * 60.00258 * 9 7 2 24 24 H 1.09007 * 109.46916 * 300.00160 * 9 7 2 25 25 H 0.97000 * 119.99978 * 0.02562 * 10 9 7 26 26 H 1.07996 * 120.15070 * 359.96067 * 14 13 11 27 27 H 1.07995 * 119.82265 * 179.97438 * 15 14 13 28 28 H 1.08002 * 119.91679 * 0.02562 * 18 13 11 29 29 H 0.96997 * 124.95719 * 180.29891 * 19 17 16 30 30 H 1.08999 * 110.29120 * 118.93828 * 20 19 17 31 31 H 1.09001 * 110.29816 * 240.96557 * 20 19 17 32 32 H 1.08994 * 110.42190 * 298.77260 * 21 16 15 33 33 H 1.08999 * 110.41621 * 61.23772 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5588 -5.1055 -0.0011 13 6 2.7146 -6.0072 -0.0005 14 6 4.0875 -5.7532 0.0011 15 6 4.9773 -6.8069 0.0022 16 6 4.5162 -8.1113 0.0011 17 6 3.1556 -8.3815 0.0057 18 6 2.2517 -7.3199 -0.0016 19 7 2.9035 -9.7549 0.0120 20 6 4.1660 -10.4983 0.0184 21 6 5.2664 -9.4248 0.0014 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 3.1567 -3.4353 -0.0002 26 1 4.4509 -4.7362 0.0013 27 1 6.0397 -6.6128 0.0030 28 1 1.1897 -7.5165 -0.0032 29 1 2.0212 -10.1580 0.0118 30 1 4.2388 -11.1119 0.9164 31 1 4.2420 -11.1222 -0.8721 32 1 5.8830 -9.5109 -0.8933 33 1 5.8808 -9.5116 0.8975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166898941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:20 Heat of formation + Delta-G solvation = -34.019764 kcal Electronic energy + Delta-G solvation = -16665.213591 eV Core-core repulsion = 13882.225420 eV Total energy + Delta-G solvation = -2782.988171 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.47503 -40.25676 -36.97322 -36.23508 -34.38474 -32.94761 -30.82042 -29.78434 -28.95257 -25.42074 -23.69838 -23.35300 -22.52383 -21.18020 -19.43420 -18.24844 -17.51041 -16.89586 -16.63540 -16.43863 -16.39336 -16.10577 -15.22772 -14.74798 -14.56738 -14.16817 -14.11351 -13.99901 -13.33906 -13.02262 -12.93101 -12.90418 -12.67012 -12.56702 -12.22657 -12.00623 -11.52358 -11.07174 -10.94130 -10.80014 -9.98716 -9.68913 -8.29100 -8.29051 -6.46524 -0.07967 0.57447 1.44020 1.48957 1.57015 1.93174 2.24169 2.42042 2.67948 2.93727 3.05943 3.65903 3.78080 3.92712 4.15029 4.34536 4.36367 4.45539 4.50411 4.79487 4.93248 5.02438 5.10646 5.15601 5.20370 5.31835 5.44190 5.46885 5.51080 5.61819 5.74426 5.82302 6.21170 6.62628 6.83662 6.90713 7.21112 7.39212 8.83291 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051873 B = 0.004196 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.645988 B = 6671.566990 C = 7185.334300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.536 3.464 12 O -0.603 6.603 13 C -0.102 4.102 14 C -0.140 4.140 15 C -0.062 4.062 16 C -0.155 4.155 17 C 0.178 3.822 18 C -0.147 4.147 19 N -0.748 5.748 20 C 0.114 3.886 21 C -0.082 4.082 22 H 0.269 0.731 23 H -0.011 1.011 24 H -0.011 1.011 25 H 0.409 0.591 26 H 0.141 0.859 27 H 0.163 0.837 28 H 0.108 0.892 29 H 0.417 0.583 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.888 -19.480 0.024 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.346 5.346 11 C 0.324 3.676 12 O -0.487 6.487 13 C -0.106 4.106 14 C -0.161 4.161 15 C -0.080 4.080 16 C -0.160 4.160 17 C 0.074 3.926 18 C -0.171 4.171 19 N -0.381 5.381 20 C -0.010 4.010 21 C -0.118 4.118 22 H 0.078 0.922 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.246 0.754 26 H 0.158 0.842 27 H 0.180 0.820 28 H 0.126 0.874 29 H 0.255 0.745 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.972 -19.657 0.026 24.710 hybrid contribution -0.813 0.973 0.000 1.268 sum 14.159 -18.684 0.026 23.443 Atomic orbital electron populations 1.70144 1.08372 1.28728 1.49775 1.26111 0.95803 1.04016 0.93664 0.85155 0.77876 0.76258 0.79613 1.18497 1.21059 1.18507 1.21578 0.94395 0.90358 1.53294 0.89595 1.18626 0.88695 0.84172 0.94284 1.46118 1.11426 1.05165 1.71913 1.19067 0.88213 0.84119 0.76161 1.90669 1.18872 1.85719 1.53424 1.19473 0.94035 0.91896 1.05209 1.21230 0.90641 1.00780 1.03441 1.20591 1.00873 0.89546 0.96998 1.20579 0.92969 0.96218 1.06252 1.18296 0.93874 0.85576 0.94857 1.20290 0.99072 0.90480 1.07229 1.44896 1.09253 1.01358 1.82643 1.22026 0.81602 0.94343 1.02979 1.21210 0.97387 0.88138 1.05103 0.92173 0.99257 0.99269 0.75408 0.84156 0.81965 0.87359 0.74488 0.89789 0.89939 0.87611 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.99 42.77 29.54 68.60 2.03 44.80 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.56 -31.24 9.28 25.60 0.24 -31.00 16 8 H 0.09 4.30 7.60 -2.91 -0.02 4.28 16 9 C 0.26 15.29 5.43 85.63 0.46 15.76 16 10 N -0.70 -32.42 5.50 -469.68 -2.58 -35.00 16 11 C 0.54 24.94 7.77 86.79 0.67 25.61 16 12 O -0.60 -33.48 16.33 -3.88 -0.06 -33.54 16 13 C -0.10 -3.69 5.86 -20.17 -0.12 -3.81 16 14 C -0.14 -3.85 9.54 22.53 0.22 -3.64 16 15 C -0.06 -1.29 10.02 22.22 0.22 -1.07 16 16 C -0.15 -3.21 6.23 -19.54 -0.12 -3.33 16 17 C 0.18 4.53 7.02 38.30 0.27 4.80 16 18 C -0.15 -4.90 9.62 22.79 0.22 -4.68 16 19 N -0.75 -13.76 6.53 -337.89 -2.21 -15.96 16 20 C 0.11 1.28 7.96 86.63 0.69 1.97 16 21 C -0.08 -0.95 6.94 30.28 0.21 -0.74 16 22 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 23 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 24 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 25 H 0.41 15.74 6.35 -92.71 -0.59 15.15 16 26 H 0.14 3.41 6.40 -2.91 -0.02 3.39 16 27 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.11 3.94 7.63 -2.91 -0.02 3.92 16 29 H 0.42 6.63 8.96 -92.71 -0.83 5.80 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -77.25 285.79 0.61 -76.64 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.27 Total: 19.55 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 3.42 Total: 0.54 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -4.50 Total: -107.99 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.06 Total: -33.54 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -77.25 0.61 -76.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166898941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.620 kcal (2) G-P(sol) polarization free energy of solvation -77.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds