Wall clock time and date at job start Mon Mar 30 2020 04:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86806 * 120.00223 * 2 1 4 4 H 1.48506 * 109.46797 * 270.00031 * 3 2 1 5 5 H 1.48498 * 109.46756 * 29.99477 * 3 2 1 6 6 H 1.48492 * 109.47367 * 149.99814 * 3 2 1 7 7 C 1.40045 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.46374 * 120.00125 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99983 * 0.02562 * 9 7 2 11 11 N 1.34783 * 120.00026 * 179.97438 * 9 7 2 12 12 C 1.46503 * 119.99645 * 180.27747 * 11 9 7 13 13 C 1.52999 * 109.46752 * 174.89002 * 12 11 9 14 14 C 1.50709 * 115.54830 * 279.91581 * 13 12 11 15 15 C 1.38666 * 120.41695 * 329.87565 * 14 13 12 16 16 C 1.38626 * 118.41997 * 180.02562 * 15 14 13 17 17 C 1.38224 * 119.16325 * 359.97438 * 16 15 14 18 18 N 1.31860 * 120.76382 * 0.02562 * 17 16 15 19 19 C 1.31895 * 121.72062 * 359.70085 * 18 17 16 20 20 C 1.52994 * 117.50178 * 134.20812 * 13 12 11 21 21 C 1.53000 * 60.00140 * 252.50885 * 20 13 12 22 22 H 0.97009 * 119.99898 * 0.02562 * 1 2 3 23 23 H 0.96995 * 119.99768 * 359.97438 * 11 9 7 24 24 H 1.08999 * 109.46843 * 294.88900 * 12 11 9 25 25 H 1.08992 * 109.47054 * 54.88820 * 12 11 9 26 26 H 1.08005 * 120.79320 * 359.97438 * 15 14 13 27 27 H 1.08010 * 120.42054 * 180.02562 * 16 15 14 28 28 H 1.08001 * 119.62208 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.61462 * 180.31716 * 19 18 17 30 30 H 1.09000 * 117.49618 * 0.02562 * 20 13 12 31 31 H 1.09000 * 117.50119 * 145.01086 * 20 13 12 32 32 H 1.09002 * 117.49639 * 252.50994 * 21 20 13 33 33 H 1.08991 * 117.49680 * 107.48621 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0464 -1.4002 5 1 1.4382 2.6527 0.6999 6 1 3.5383 1.4402 0.7000 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0017 12 6 1.2163 -4.9164 -0.0033 13 6 2.2060 -6.0762 -0.1307 14 6 2.7054 -6.3543 -1.5252 15 6 1.9040 -6.0859 -2.6245 16 6 2.4047 -6.3581 -3.8882 17 6 3.6772 -6.8838 -4.0097 18 7 4.4115 -7.1265 -2.9416 19 6 3.9697 -6.8751 -1.7246 20 6 2.0165 -7.2726 0.8039 21 6 3.1799 -6.3043 1.0270 22 1 -0.4850 0.8401 -0.0004 23 1 2.9189 -3.6477 0.0005 24 1 0.6569 -5.0166 0.9268 25 1 0.5257 -4.9338 -0.8463 26 1 0.9130 -5.6752 -2.4992 27 1 1.8082 -6.1611 -4.7669 28 1 4.0745 -7.0991 -4.9906 29 1 4.6019 -7.0823 -0.8739 30 1 1.1865 -7.2336 1.5093 31 1 2.2528 -8.2612 0.4103 32 1 4.1817 -6.6559 0.7801 33 1 3.1155 -5.6282 1.8794 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169807289.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:00 Heat of formation + Delta-G solvation = 18.724022 kcal Electronic energy + Delta-G solvation = -17151.181551 eV Core-core repulsion = 14370.480522 eV Total energy + Delta-G solvation = -2780.701029 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41163 -38.06243 -36.65133 -32.90136 -32.36516 -31.97230 -30.74895 -27.42780 -25.40218 -23.75351 -23.23590 -22.23389 -19.85280 -19.33668 -17.53136 -17.06794 -16.09878 -15.54081 -15.30996 -14.63157 -14.34858 -14.08027 -13.82174 -13.45805 -13.40714 -12.75911 -12.33527 -12.12496 -11.48976 -11.42133 -11.35691 -11.17514 -10.93822 -10.75664 -10.44088 -10.22573 -10.13344 -9.59511 -9.34051 -8.85393 -8.71020 -7.61705 -7.49447 -6.18827 -4.63898 1.15023 1.37772 3.13938 3.20794 3.24235 3.63091 4.03108 4.13824 4.36821 4.58104 4.67489 4.71910 4.80693 4.93129 5.07508 5.08361 5.30538 5.37614 5.55670 5.63120 5.77695 5.81872 5.92209 5.97599 6.16511 6.18064 6.31014 6.46440 6.52323 6.77148 7.43449 7.93631 8.00892 8.09613 8.33606 9.02700 9.54103 10.59799 10.78396 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.005795 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.571055 B = 4830.748699 C = 5240.237674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.583 6.583 11 N -0.763 5.763 12 C 0.172 3.828 13 C -0.100 4.100 14 C -0.082 4.082 15 C -0.062 4.062 16 C -0.168 4.168 17 C 0.084 3.916 18 N -0.485 5.485 19 C 0.092 3.908 20 C -0.157 4.157 21 C -0.165 4.165 22 H 0.268 0.732 23 H 0.381 0.619 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -12.737 -2.942 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.418 5.418 12 C 0.047 3.953 13 C -0.102 4.102 14 C -0.084 4.084 15 C -0.088 4.088 16 C -0.188 4.188 17 C -0.073 4.073 18 N -0.194 5.194 19 C -0.064 4.064 20 C -0.194 4.194 21 C -0.202 4.202 22 H 0.079 0.921 23 H 0.212 0.788 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.169 0.831 29 H 0.170 0.830 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.972 -12.983 -3.053 14.613 hybrid contribution 0.033 1.220 0.009 1.221 sum 6.006 -11.763 -3.044 13.553 Atomic orbital electron populations 1.70024 1.07040 1.27211 1.35482 1.25697 0.94602 1.00250 0.92610 0.86393 0.80185 0.81466 0.78836 1.19763 1.20439 1.18911 1.20882 0.93566 0.89428 1.54324 0.91517 1.18210 0.87169 0.82418 0.76316 1.90596 1.14093 1.86896 1.55023 1.46095 1.08600 1.04468 1.82652 1.20362 0.92005 0.82231 1.00745 1.20414 1.02612 0.99027 0.88098 1.20013 0.95122 0.99055 0.94175 1.21572 1.00362 0.95150 0.91749 1.22141 0.97550 1.00833 0.98249 1.22690 0.91238 0.95885 0.97438 1.67677 1.36229 1.16459 0.99005 1.22622 0.93297 0.95800 0.94722 1.23090 1.01069 0.93795 1.01450 1.23097 0.94683 1.02784 0.99628 0.92144 0.78794 0.93071 0.92538 0.84410 0.84840 0.83062 0.83000 0.88023 0.88708 0.88455 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.13 11.83 55.55 0.66 -22.47 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.27 29.56 -169.99 -5.02 15.24 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.54 -15.48 9.54 -35.63 -0.34 -15.82 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.75 7.75 -12.98 -0.10 15.65 16 10 O -0.58 -18.81 15.02 5.20 0.08 -18.74 16 11 N -0.76 -16.90 5.52 -61.72 -0.34 -17.24 16 12 C 0.17 3.22 5.36 -4.04 -0.02 3.19 16 13 C -0.10 -1.42 2.00 -155.66 -0.31 -1.74 16 14 C -0.08 -1.17 5.50 -104.48 -0.57 -1.74 16 15 C -0.06 -0.90 9.43 -39.28 -0.37 -1.27 16 16 C -0.17 -2.10 10.11 -39.44 -0.40 -2.50 16 17 C 0.08 1.05 11.18 -17.54 -0.20 0.86 16 18 N -0.49 -6.88 10.36 -13.25 -0.14 -7.02 16 19 C 0.09 1.25 10.53 -17.55 -0.18 1.07 16 20 C -0.16 -1.80 9.86 -26.73 -0.26 -2.06 16 21 C -0.17 -1.98 9.49 -26.73 -0.25 -2.23 16 22 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 23 H 0.38 7.68 8.39 -40.82 -0.34 7.34 16 24 H 0.05 1.00 7.95 -51.93 -0.41 0.59 16 25 H 0.06 1.13 6.25 -51.93 -0.32 0.80 16 26 H 0.14 2.04 6.41 -52.48 -0.34 1.70 16 27 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 28 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.15 1.75 5.96 -52.49 -0.31 1.43 16 30 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.99 6.13 -51.93 -0.32 0.67 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 287.57 15.07 4.33 4.33 Total: -1.00 -34.53 287.57 -7.25 -41.78 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.70 Total: 8.33 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.11 Total: -4.22 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.18 Total: -46.73 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.08 Total: -18.74 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.53 -7.25 -41.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169807289.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.501 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds