Wall clock time and date at job start Mon Mar 30 2020 04:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86806 * 120.00223 * 2 1 4 4 H 1.48506 * 109.46797 * 270.00031 * 3 2 1 5 5 H 1.48498 * 109.46756 * 29.99477 * 3 2 1 6 6 H 1.48492 * 109.47367 * 149.99814 * 3 2 1 7 7 C 1.40045 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.46374 * 120.00125 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99983 * 0.02562 * 9 7 2 11 11 N 1.34783 * 120.00026 * 179.97438 * 9 7 2 12 12 C 1.46503 * 119.99645 * 180.27747 * 11 9 7 13 13 C 1.52999 * 109.46752 * 174.89002 * 12 11 9 14 14 C 1.50709 * 115.54830 * 279.91581 * 13 12 11 15 15 C 1.38666 * 120.41695 * 329.87565 * 14 13 12 16 16 C 1.38626 * 118.41997 * 180.02562 * 15 14 13 17 17 C 1.38224 * 119.16325 * 359.97438 * 16 15 14 18 18 N 1.31860 * 120.76382 * 0.02562 * 17 16 15 19 19 C 1.31895 * 121.72062 * 359.70085 * 18 17 16 20 20 C 1.52994 * 117.50178 * 134.20812 * 13 12 11 21 21 C 1.53000 * 60.00140 * 252.50885 * 20 13 12 22 22 H 0.97009 * 119.99898 * 0.02562 * 1 2 3 23 23 H 0.96995 * 119.99768 * 359.97438 * 11 9 7 24 24 H 1.08999 * 109.46843 * 294.88900 * 12 11 9 25 25 H 1.08992 * 109.47054 * 54.88820 * 12 11 9 26 26 H 1.08005 * 120.79320 * 359.97438 * 15 14 13 27 27 H 1.08010 * 120.42054 * 180.02562 * 16 15 14 28 28 H 1.08001 * 119.62208 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.61462 * 180.31716 * 19 18 17 30 30 H 1.09000 * 117.49618 * 0.02562 * 20 13 12 31 31 H 1.09000 * 117.50119 * 145.01086 * 20 13 12 32 32 H 1.09002 * 117.49639 * 252.50994 * 21 20 13 33 33 H 1.08991 * 117.49680 * 107.48621 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0464 -1.4002 5 1 1.4382 2.6527 0.6999 6 1 3.5383 1.4402 0.7000 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0017 12 6 1.2163 -4.9164 -0.0033 13 6 2.2060 -6.0762 -0.1307 14 6 2.7054 -6.3543 -1.5252 15 6 1.9040 -6.0859 -2.6245 16 6 2.4047 -6.3581 -3.8882 17 6 3.6772 -6.8838 -4.0097 18 7 4.4115 -7.1265 -2.9416 19 6 3.9697 -6.8751 -1.7246 20 6 2.0165 -7.2726 0.8039 21 6 3.1799 -6.3043 1.0270 22 1 -0.4850 0.8401 -0.0004 23 1 2.9189 -3.6477 0.0005 24 1 0.6569 -5.0166 0.9268 25 1 0.5257 -4.9338 -0.8463 26 1 0.9130 -5.6752 -2.4992 27 1 1.8082 -6.1611 -4.7669 28 1 4.0745 -7.0991 -4.9906 29 1 4.6019 -7.0823 -0.8739 30 1 1.1865 -7.2336 1.5093 31 1 2.2528 -8.2612 0.4103 32 1 4.1817 -6.6559 0.7801 33 1 3.1155 -5.6282 1.8794 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169807289.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:00 Heat of formation + Delta-G solvation = -5.552211 kcal Electronic energy + Delta-G solvation = -17152.234247 eV Core-core repulsion = 14370.480522 eV Total energy + Delta-G solvation = -2781.753725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47415 -39.58847 -38.34869 -34.87841 -34.13020 -33.34666 -31.74693 -29.31479 -27.17226 -24.82349 -24.37545 -23.21776 -21.74220 -20.71907 -19.20465 -18.36140 -17.46156 -17.17367 -16.68930 -15.97500 -15.94612 -15.51284 -15.16832 -14.88389 -14.66840 -14.23006 -14.04618 -13.29408 -13.22865 -13.06824 -12.72982 -12.65603 -12.49890 -12.30664 -12.04298 -11.85178 -11.24297 -10.94457 -10.65151 -10.38773 -9.92971 -9.67041 -9.46954 -8.30315 -6.86669 0.15132 0.31529 1.38852 1.40199 1.55538 2.22942 2.46081 2.58670 2.95417 3.31141 3.38174 3.58433 3.67942 3.73432 3.76584 3.99205 4.06732 4.17922 4.33466 4.54467 4.69365 4.73521 4.79242 4.84375 5.01166 5.02417 5.22760 5.24535 5.30495 5.39400 5.76616 5.86614 6.21215 6.26931 6.85756 7.00105 7.53873 8.48030 8.66230 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.005795 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.571055 B = 4830.748699 C = 5240.237674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.539 3.461 10 O -0.634 6.634 11 N -0.747 5.747 12 C 0.175 3.825 13 C -0.116 4.116 14 C -0.089 4.089 15 C -0.088 4.088 16 C -0.167 4.167 17 C 0.082 3.918 18 N -0.501 5.501 19 C 0.090 3.910 20 C -0.137 4.137 21 C -0.153 4.153 22 H 0.274 0.726 23 H 0.392 0.608 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.121 0.879 27 H 0.156 0.844 28 H 0.183 0.817 29 H 0.174 0.826 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.652 -13.082 -3.172 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.611 4.611 8 H 0.102 0.898 9 C 0.343 3.657 10 O -0.521 6.521 11 N -0.401 5.401 12 C 0.051 3.949 13 C -0.117 4.117 14 C -0.091 4.091 15 C -0.114 4.114 16 C -0.187 4.187 17 C -0.074 4.074 18 N -0.209 5.209 19 C -0.067 4.067 20 C -0.174 4.174 21 C -0.190 4.190 22 H 0.084 0.916 23 H 0.225 0.775 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.139 0.861 27 H 0.173 0.827 28 H 0.200 0.800 29 H 0.191 0.809 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.439 -13.381 -3.280 16.156 hybrid contribution -0.756 1.246 0.055 1.459 sum 7.683 -12.135 -3.225 14.720 Atomic orbital electron populations 1.70187 1.09486 1.28919 1.36535 1.26949 0.95513 1.04877 0.91195 0.85046 0.78822 0.75192 0.79406 1.18701 1.19628 1.17254 1.21416 0.94611 0.90228 1.54800 0.89761 1.18577 0.86790 0.84328 0.76039 1.90549 1.16177 1.88022 1.57366 1.45746 1.09071 1.04389 1.80903 1.20354 0.92836 0.82524 0.99231 1.20132 1.03367 0.98829 0.89404 1.20015 0.95573 0.99686 0.93779 1.21660 1.00158 0.96413 0.93177 1.22402 0.97987 1.00063 0.98215 1.23211 0.90935 0.94860 0.98411 1.67744 1.36739 1.16943 0.99520 1.22894 0.92958 0.95448 0.95374 1.23195 1.00812 0.93738 0.99667 1.23202 0.95806 1.02318 0.97654 0.91562 0.77459 0.94281 0.94529 0.86079 0.82658 0.79991 0.80931 0.87817 0.86598 0.85942 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.74 11.83 21.83 0.26 -50.48 16 2 C 0.03 1.67 5.50 85.30 0.47 2.14 16 3 Si 1.00 41.31 29.56 68.60 2.03 43.33 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.57 -32.96 9.54 24.83 0.24 -32.72 16 8 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 9 C 0.54 31.59 7.75 86.36 0.67 32.26 16 10 O -0.63 -42.86 15.02 -4.31 -0.06 -42.93 16 11 N -0.75 -33.88 5.52 -467.40 -2.58 -36.46 16 12 C 0.18 6.79 5.36 86.38 0.46 7.25 16 13 C -0.12 -3.22 2.00 -52.93 -0.11 -3.32 16 14 C -0.09 -2.45 5.50 -19.77 -0.11 -2.56 16 15 C -0.09 -2.55 9.43 22.46 0.21 -2.34 16 16 C -0.17 -4.00 10.11 22.36 0.23 -3.78 16 17 C 0.08 1.88 11.18 84.69 0.95 2.82 16 18 N -0.50 -13.08 10.36 -195.84 -2.03 -15.11 16 19 C 0.09 2.24 10.53 84.67 0.89 3.13 16 20 C -0.14 -2.88 9.86 30.59 0.30 -2.57 16 21 C -0.15 -3.34 9.49 30.59 0.29 -3.05 16 22 H 0.27 15.32 8.29 -92.70 -0.77 14.55 16 23 H 0.39 15.84 8.39 -92.71 -0.78 15.06 16 24 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 25 H 0.04 1.56 6.25 -2.39 -0.01 1.54 16 26 H 0.12 3.83 6.41 -2.91 -0.02 3.81 16 27 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 28 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.17 3.41 5.96 -2.91 -0.02 3.40 16 30 H 0.10 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.12 2.06 6.13 -2.39 -0.01 2.05 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -77.11 287.57 2.47 -74.65 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.36 Total: 29.74 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.49 Total: -2.73 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -4.35 Total: -102.06 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.06 Total: -42.93 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -77.11 2.47 -74.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169807289.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.094 kcal (2) G-P(sol) polarization free energy of solvation -77.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds