Wall clock time and date at job start Mon Mar 30 2020 04:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86792 * 120.00056 * 2 1 4 4 H 1.48502 * 109.47292 * 265.00090 * 3 2 1 5 5 H 1.48496 * 109.47173 * 25.00097 * 3 2 1 6 6 H 1.48500 * 109.47407 * 145.00090 * 3 2 1 7 7 C 1.40050 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00041 * 185.05787 * 7 2 1 9 9 C 1.46376 * 119.99886 * 5.04965 * 7 2 1 10 10 O 1.21679 * 120.00466 * 5.01691 * 9 7 2 11 11 N 1.34778 * 119.99828 * 185.01076 * 9 7 2 12 12 C 1.47237 * 121.35283 * 174.76677 * 11 9 7 13 13 C 1.52781 * 107.89280 * 115.61370 * 12 11 9 14 14 C 1.50629 * 110.86715 * 47.44634 * 13 12 11 15 15 C 1.39057 * 117.53145 * 160.38398 * 14 13 12 16 16 C 1.37767 * 120.69134 * 179.53264 * 15 14 13 17 17 C 1.38941 * 119.74630 * 359.96103 * 16 15 14 18 18 N 1.39672 * 120.22035 * 180.25592 * 17 16 15 19 19 C 1.38625 * 119.55638 * 0.24034 * 17 16 15 20 20 C 1.37740 * 122.83948 * 340.28115 * 14 13 12 21 21 C 1.46681 * 121.35334 * 354.75407 * 11 9 7 22 22 H 0.97001 * 120.00152 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.77429 * 356.01989 * 12 11 9 24 24 H 1.09001 * 109.82621 * 235.23950 * 12 11 9 25 25 H 1.08999 * 109.19876 * 167.80631 * 13 12 11 26 26 H 1.09002 * 109.19692 * 287.08951 * 13 12 11 27 27 H 1.08000 * 119.65587 * 359.51171 * 15 14 13 28 28 H 1.08001 * 120.12413 * 179.97438 * 16 15 14 29 29 H 0.97005 * 120.00127 * 179.97438 * 18 17 16 30 30 H 0.97003 * 120.00262 * 359.97438 * 18 17 16 31 31 H 1.08003 * 119.76962 * 179.97438 * 19 17 16 32 32 H 1.08998 * 109.43542 * 344.41529 * 21 11 9 33 33 H 1.08996 * 109.44134 * 104.33792 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5938 1.9854 -1.3947 5 1 1.3893 2.6808 0.5917 6 1 3.4814 1.4730 0.8030 7 6 2.0069 -1.2129 -0.0005 8 1 3.0838 -1.2148 0.0819 9 6 1.2793 -2.4780 -0.1127 10 8 0.0765 -2.4739 -0.2971 11 7 1.9415 -3.6475 -0.0119 12 6 1.2267 -4.9347 -0.0060 13 6 1.6415 -5.7077 -1.2569 14 6 3.1382 -5.6921 -1.4255 15 6 3.7033 -6.6659 -2.2416 16 6 5.0647 -6.7062 -2.4491 17 6 5.8833 -5.7645 -1.8380 18 7 7.2642 -5.7929 -2.0457 19 6 5.3203 -4.7963 -1.0210 20 6 3.9494 -4.7630 -0.8123 21 6 3.4037 -3.6897 0.0963 22 1 -0.4850 0.8400 0.0004 23 1 0.1510 -4.7592 -0.0208 24 1 1.4954 -5.5028 0.8846 25 1 1.3013 -6.7395 -1.1699 26 1 1.1775 -5.2506 -2.1309 27 1 3.0683 -7.3985 -2.7176 28 1 5.4938 -7.4668 -3.0844 29 1 7.8327 -5.1336 -1.6178 30 1 7.6548 -6.4719 -2.6179 31 1 5.9535 -4.0628 -0.5440 32 1 3.8169 -2.7239 -0.1944 33 1 3.6852 -3.9096 1.1261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170182130.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:56 Heat of formation + Delta-G solvation = -13.152238 kcal Electronic energy + Delta-G solvation = -17442.183464 eV Core-core repulsion = 14660.100178 eV Total energy + Delta-G solvation = -2782.083287 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.66814 -37.55828 -35.39961 -33.43614 -32.53305 -31.86700 -30.12025 -27.81525 -26.23523 -24.67161 -22.67637 -21.94422 -20.44704 -18.60693 -16.96536 -16.60820 -16.18101 -15.57986 -15.02050 -14.48847 -14.25667 -14.12367 -13.48789 -13.31445 -13.10497 -12.68291 -12.28547 -12.00289 -11.73293 -11.62440 -11.35347 -11.04123 -10.90801 -10.67200 -10.32441 -10.18700 -10.06133 -9.81248 -8.83696 -8.41115 -7.57896 -7.23225 -7.17880 -6.20261 -4.63189 1.70792 1.90212 3.15168 3.21527 3.23797 3.94225 4.09931 4.12771 4.56384 4.60374 5.09212 5.21573 5.34780 5.58721 5.64009 5.75416 5.87343 5.93405 6.03885 6.22581 6.23812 6.30616 6.40187 6.54577 6.56691 6.69926 6.79513 7.09012 7.21755 7.45892 7.60039 7.65985 7.82208 8.13681 8.38173 9.02968 9.45891 10.58532 10.76948 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.006680 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.704742 B = 4190.636177 C = 5031.012703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.564 3.436 10 O -0.577 6.577 11 N -0.642 5.642 12 C 0.119 3.881 13 C -0.088 4.088 14 C -0.118 4.118 15 C -0.077 4.077 16 C -0.203 4.203 17 C 0.205 3.795 18 N -0.884 5.884 19 C -0.196 4.196 20 C -0.034 4.034 21 C 0.160 3.840 22 H 0.269 0.731 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.395 0.605 30 H 0.393 0.607 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.044 -10.375 -2.491 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.370 3.630 10 O -0.460 6.460 11 N -0.379 5.379 12 C -0.005 4.005 13 C -0.126 4.126 14 C -0.120 4.120 15 C -0.096 4.096 16 C -0.225 4.225 17 C 0.102 3.898 18 N -0.424 5.424 19 C -0.219 4.219 20 C -0.035 4.035 21 C 0.035 3.965 22 H 0.080 0.920 23 H 0.105 0.895 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.223 0.777 30 H 0.221 0.779 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.101 -10.230 -2.570 15.313 hybrid contribution 1.090 0.672 -0.182 1.293 sum 12.191 -9.558 -2.752 15.734 Atomic orbital electron populations 1.69996 1.07097 1.27386 1.35180 1.25709 0.94588 1.00261 0.92531 0.86416 0.80098 0.81399 0.79040 1.19631 1.20483 1.18933 1.20952 0.93899 0.89377 1.53894 0.91029 1.18188 0.86689 0.81935 0.76192 1.90583 1.15140 1.86066 1.54211 1.48166 1.04504 1.05641 1.79632 1.21131 0.98935 0.85437 0.94974 1.20736 0.91596 0.99954 1.00326 1.19374 0.95663 0.96650 1.00360 1.20894 0.94077 0.97619 0.97013 1.20385 0.93761 1.01851 1.06512 1.17599 0.83969 0.94105 0.94145 1.42371 1.04310 1.38108 1.57611 1.20431 0.94793 1.01631 1.05083 1.19968 0.92356 0.95349 0.95862 1.20259 0.83041 0.97160 0.96010 0.92040 0.89509 0.93451 0.91509 0.91060 0.86650 0.86914 0.77709 0.77926 0.86371 0.88182 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.06 11.87 55.55 0.66 -22.41 16 2 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 3 Si 0.91 20.13 29.56 -169.99 -5.03 15.11 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -15.39 8.83 -35.63 -0.31 -15.70 16 8 H 0.07 1.84 5.89 -52.49 -0.31 1.53 16 9 C 0.56 16.31 7.63 -12.99 -0.10 16.21 16 10 O -0.58 -18.86 14.58 5.21 0.08 -18.78 16 11 N -0.64 -15.11 2.93 -176.04 -0.52 -15.62 16 12 C 0.12 2.42 6.43 -3.75 -0.02 2.40 16 13 C -0.09 -1.53 5.86 -28.03 -0.16 -1.70 16 14 C -0.12 -2.03 5.77 -104.53 -0.60 -2.63 16 15 C -0.08 -1.13 9.58 -39.45 -0.38 -1.51 16 16 C -0.20 -2.70 9.90 -39.49 -0.39 -3.10 16 17 C 0.20 2.74 6.75 -83.88 -0.57 2.18 16 18 N -0.88 -8.49 9.09 32.36 0.29 -8.20 16 19 C -0.20 -2.97 9.47 -39.26 -0.37 -3.34 16 20 C -0.03 -0.59 5.82 -104.56 -0.61 -1.20 16 21 C 0.16 3.14 6.01 -5.03 -0.03 3.11 16 22 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 23 H 0.09 1.92 7.10 -51.93 -0.37 1.55 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.12 1.43 8.05 -52.49 -0.42 1.00 16 28 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.40 3.18 8.85 -40.82 -0.36 2.82 16 30 H 0.39 2.94 8.85 -40.82 -0.36 2.58 16 31 H 0.12 1.58 8.05 -52.48 -0.42 1.16 16 32 H 0.10 2.03 5.70 -51.93 -0.30 1.74 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 278.26 15.07 4.19 4.19 Total: -1.00 -34.61 278.26 -7.75 -42.36 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -3.79 Total: 6.23 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.65 Total: -2.88 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.44 Total: -46.23 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.08 Total: -18.78 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -34.61 -7.75 -42.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182130.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.212 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds