Wall clock time and date at job start Mon Mar 30 2020 04:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86792 * 120.00056 * 2 1 4 4 H 1.48502 * 109.47292 * 265.00090 * 3 2 1 5 5 H 1.48496 * 109.47173 * 25.00097 * 3 2 1 6 6 H 1.48500 * 109.47407 * 145.00090 * 3 2 1 7 7 C 1.40050 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00041 * 185.05787 * 7 2 1 9 9 C 1.46376 * 119.99886 * 5.04965 * 7 2 1 10 10 O 1.21679 * 120.00466 * 5.01691 * 9 7 2 11 11 N 1.34778 * 119.99828 * 185.01076 * 9 7 2 12 12 C 1.47237 * 121.35283 * 174.76677 * 11 9 7 13 13 C 1.52781 * 107.89280 * 115.61370 * 12 11 9 14 14 C 1.50629 * 110.86715 * 47.44634 * 13 12 11 15 15 C 1.39057 * 117.53145 * 160.38398 * 14 13 12 16 16 C 1.37767 * 120.69134 * 179.53264 * 15 14 13 17 17 C 1.38941 * 119.74630 * 359.96103 * 16 15 14 18 18 N 1.39672 * 120.22035 * 180.25592 * 17 16 15 19 19 C 1.38625 * 119.55638 * 0.24034 * 17 16 15 20 20 C 1.37740 * 122.83948 * 340.28115 * 14 13 12 21 21 C 1.46681 * 121.35334 * 354.75407 * 11 9 7 22 22 H 0.97001 * 120.00152 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.77429 * 356.01989 * 12 11 9 24 24 H 1.09001 * 109.82621 * 235.23950 * 12 11 9 25 25 H 1.08999 * 109.19876 * 167.80631 * 13 12 11 26 26 H 1.09002 * 109.19692 * 287.08951 * 13 12 11 27 27 H 1.08000 * 119.65587 * 359.51171 * 15 14 13 28 28 H 1.08001 * 120.12413 * 179.97438 * 16 15 14 29 29 H 0.97005 * 120.00127 * 179.97438 * 18 17 16 30 30 H 0.97003 * 120.00262 * 359.97438 * 18 17 16 31 31 H 1.08003 * 119.76962 * 179.97438 * 19 17 16 32 32 H 1.08998 * 109.43542 * 344.41529 * 21 11 9 33 33 H 1.08996 * 109.44134 * 104.33792 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5938 1.9854 -1.3947 5 1 1.3893 2.6808 0.5917 6 1 3.4814 1.4730 0.8030 7 6 2.0069 -1.2129 -0.0005 8 1 3.0838 -1.2148 0.0819 9 6 1.2793 -2.4780 -0.1127 10 8 0.0765 -2.4739 -0.2971 11 7 1.9415 -3.6475 -0.0119 12 6 1.2267 -4.9347 -0.0060 13 6 1.6415 -5.7077 -1.2569 14 6 3.1382 -5.6921 -1.4255 15 6 3.7033 -6.6659 -2.2416 16 6 5.0647 -6.7062 -2.4491 17 6 5.8833 -5.7645 -1.8380 18 7 7.2642 -5.7929 -2.0457 19 6 5.3203 -4.7963 -1.0210 20 6 3.9494 -4.7630 -0.8123 21 6 3.4037 -3.6897 0.0963 22 1 -0.4850 0.8400 0.0004 23 1 0.1510 -4.7592 -0.0208 24 1 1.4954 -5.5028 0.8846 25 1 1.3013 -6.7395 -1.1699 26 1 1.1775 -5.2506 -2.1309 27 1 3.0683 -7.3985 -2.7176 28 1 5.4938 -7.4668 -3.0844 29 1 7.8327 -5.1336 -1.6178 30 1 7.6548 -6.4719 -2.6179 31 1 5.9535 -4.0628 -0.5440 32 1 3.8169 -2.7239 -0.1944 33 1 3.6852 -3.9096 1.1261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170182130.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:56 Heat of formation + Delta-G solvation = -37.774200 kcal Electronic energy + Delta-G solvation = -17443.251153 eV Core-core repulsion = 14660.100178 eV Total energy + Delta-G solvation = -2783.150975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99106 -39.31466 -36.99211 -34.87612 -34.60184 -33.25115 -31.53608 -29.17628 -28.17214 -26.22740 -24.17528 -23.11091 -22.05515 -20.30811 -18.51591 -17.92858 -17.50082 -17.38959 -16.40557 -16.14076 -15.96175 -15.55153 -14.89393 -14.75633 -14.31538 -14.27128 -13.83831 -13.52127 -13.38220 -13.30914 -12.93820 -12.74705 -12.60654 -12.35573 -12.00467 -11.74419 -11.64989 -10.96588 -10.92407 -9.86855 -9.57005 -9.09401 -8.30954 -8.23251 -6.84295 0.56409 0.74446 1.39350 1.41832 1.55878 2.23767 2.45262 2.80546 2.97338 3.12459 3.57626 3.89366 3.99428 4.17357 4.28158 4.42628 4.49213 4.55550 4.66563 4.80972 4.87415 4.94142 5.05902 5.14715 5.24223 5.36228 5.45259 5.56670 5.75006 5.93294 6.07162 6.11349 6.40242 6.69849 6.87028 7.11550 7.41777 8.45428 8.66456 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.006680 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.704742 B = 4190.636177 C = 5031.012703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.544 3.456 10 O -0.632 6.632 11 N -0.646 5.646 12 C 0.115 3.885 13 C -0.077 4.077 14 C -0.148 4.148 15 C -0.075 4.075 16 C -0.200 4.200 17 C 0.212 3.788 18 N -0.867 5.867 19 C -0.207 4.207 20 C -0.055 4.055 21 C 0.161 3.839 22 H 0.275 0.725 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.046 0.954 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.405 0.595 30 H 0.407 0.593 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.422 -11.136 -3.165 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.606 4.606 8 H 0.110 0.890 9 C 0.351 3.649 10 O -0.519 6.519 11 N -0.382 5.382 12 C -0.008 4.008 13 C -0.115 4.115 14 C -0.150 4.150 15 C -0.093 4.093 16 C -0.223 4.223 17 C 0.106 3.894 18 N -0.408 5.408 19 C -0.230 4.230 20 C -0.056 4.056 21 C 0.037 3.963 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.065 0.935 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.234 0.766 30 H 0.237 0.763 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.569 -11.052 -3.245 18.572 hybrid contribution 0.129 0.771 0.011 0.782 sum 14.698 -10.281 -3.234 18.226 Atomic orbital electron populations 1.70170 1.09601 1.29027 1.36379 1.26991 0.95496 1.04929 0.91117 0.85068 0.78849 0.75039 0.79598 1.18764 1.19657 1.16881 1.21474 0.95077 0.89918 1.54151 0.89019 1.18610 0.86366 0.83901 0.76026 1.90525 1.17331 1.87383 1.56707 1.48019 1.06420 1.05403 1.78350 1.21289 0.97027 0.84760 0.97764 1.20597 0.92590 1.00912 0.97374 1.19410 0.94957 0.98258 1.02419 1.21108 0.95134 0.97049 0.96047 1.20757 0.93261 1.02137 1.06121 1.17695 0.85563 0.93177 0.92922 1.42346 1.02904 1.38453 1.57105 1.20513 0.93883 1.02737 1.05901 1.19818 0.93706 0.95307 0.96805 1.20329 0.80472 0.97868 0.97604 0.91526 0.92522 0.91203 0.88173 0.93528 0.84413 0.83781 0.76574 0.76271 0.85138 0.89369 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.30 11.87 21.84 0.26 -51.05 16 2 C 0.03 1.69 5.49 85.31 0.47 2.16 16 3 Si 1.00 41.46 29.56 68.60 2.03 43.49 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 7 C -0.57 -33.09 8.83 24.83 0.22 -32.87 16 8 H 0.09 4.76 5.89 -2.91 -0.02 4.74 16 9 C 0.54 33.08 7.63 86.36 0.66 33.74 16 10 O -0.63 -43.94 14.58 -4.28 -0.06 -44.00 16 11 N -0.65 -31.61 2.93 -829.09 -2.43 -34.04 16 12 C 0.11 4.85 6.43 86.17 0.55 5.40 16 13 C -0.08 -2.69 5.86 29.75 0.17 -2.52 16 14 C -0.15 -4.92 5.77 -19.81 -0.11 -5.04 16 15 C -0.07 -1.97 9.58 22.35 0.21 -1.76 16 16 C -0.20 -4.56 9.90 22.33 0.22 -4.34 16 17 C 0.21 4.93 6.75 38.15 0.26 5.19 16 18 N -0.87 -13.06 9.09 -51.53 -0.47 -13.53 16 19 C -0.21 -5.82 9.47 22.48 0.21 -5.61 16 20 C -0.05 -1.89 5.82 -19.83 -0.12 -2.00 16 21 C 0.16 6.39 6.01 85.64 0.51 6.90 16 22 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 23 H 0.06 2.69 7.10 -2.39 -0.02 2.67 16 24 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.10 2.76 8.11 -2.39 -0.02 2.74 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.14 2.93 8.05 -2.91 -0.02 2.91 16 28 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.41 4.92 8.85 -92.70 -0.82 4.10 16 30 H 0.41 4.20 8.85 -92.71 -0.82 3.38 16 31 H 0.13 3.21 8.05 -2.91 -0.02 3.19 16 32 H 0.09 3.63 5.70 -2.39 -0.01 3.62 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -79.33 278.26 2.11 -77.22 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.48 Total: 22.64 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 3.27 Total: -0.74 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -2.64 Total: -98.62 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.06 Total: -44.00 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -79.33 2.11 -77.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182130.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.448 kcal (2) G-P(sol) polarization free energy of solvation -79.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds