Wall clock time and date at job start Mon Mar 30 2020 04:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31470 * 1 3 3 Si 1.86804 * 119.99810 * 2 1 4 4 H 1.48499 * 109.46997 * 269.99371 * 3 2 1 5 5 H 1.48496 * 109.47275 * 30.00138 * 3 2 1 6 6 H 1.48504 * 109.46966 * 149.99865 * 3 2 1 7 7 C 1.38832 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99776 * 166.87805 * 7 2 1 9 9 N 1.37192 * 119.99856 * 346.87647 * 7 2 1 10 10 C 1.34776 * 120.00104 * 159.40368 * 9 7 2 11 11 O 1.21568 * 120.00090 * 184.62049 * 10 9 7 12 12 N 1.34776 * 119.99673 * 4.61652 * 10 9 7 13 13 C 1.46508 * 119.99953 * 180.02562 * 12 10 9 14 14 C 1.52997 * 117.49470 * 223.75163 * 13 12 10 15 15 C 1.52994 * 117.49680 * 155.08841 * 13 12 10 16 16 C 1.39758 * 120.00183 * 339.12937 * 9 7 2 17 17 C 1.38968 * 120.07299 * 291.15651 * 16 9 7 18 18 C 1.38086 * 119.91556 * 179.78981 * 17 16 9 19 19 C 1.38313 * 120.07829 * 0.46049 * 18 17 16 20 20 C 1.38316 * 120.15670 * 359.79175 * 19 18 17 21 21 C 1.38077 * 120.08171 * 359.97438 * 20 19 18 22 22 H 0.97005 * 120.00596 * 5.02390 * 1 2 3 23 23 H 0.97000 * 120.00453 * 0.02562 * 12 10 9 24 24 H 1.08998 * 115.54601 * 9.41604 * 13 12 10 25 25 H 1.08997 * 117.50219 * 359.97438 * 14 13 12 26 26 H 1.08999 * 117.49561 * 145.02144 * 14 13 12 27 27 H 1.09002 * 117.49733 * 214.97169 * 15 13 12 28 28 H 1.08992 * 117.50508 * 359.97438 * 15 13 12 29 29 H 1.07996 * 120.04833 * 0.02562 * 17 16 9 30 30 H 1.08000 * 119.96317 * 180.24977 * 18 17 16 31 31 H 1.07997 * 119.92104 * 179.76172 * 19 18 17 32 32 H 1.07999 * 119.95568 * 179.97438 * 20 19 18 33 33 H 1.07992 * 120.03891 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 2.4963 2.0464 -1.4001 5 1 1.4461 2.6527 0.7000 6 1 3.5462 1.4402 0.7001 7 6 2.0089 -1.2023 0.0005 8 1 3.0677 -1.2145 -0.2118 9 7 1.3498 -2.3748 0.2708 10 6 1.8792 -3.5510 -0.1200 11 8 1.2568 -4.5822 0.0442 12 7 3.0987 -3.5838 -0.6930 13 6 3.6739 -4.8623 -1.1185 14 6 5.1477 -5.1162 -0.7952 15 6 4.7180 -4.8300 -2.2363 16 6 0.1323 -2.3500 0.9565 17 6 0.0956 -1.9878 2.2977 18 6 -1.1097 -1.9603 2.9709 19 6 -2.2783 -2.3017 2.3145 20 6 -2.2447 -2.6677 0.9811 21 6 -1.0437 -2.6929 0.3003 22 1 -0.4851 0.8368 -0.0736 23 1 3.5955 -2.7610 -0.8238 24 1 2.9972 -5.7162 -1.0862 25 1 5.6893 -4.3319 -0.2665 26 1 5.4406 -6.1372 -0.5508 27 1 4.7285 -5.6630 -2.9393 28 1 4.9766 -3.8578 -2.6556 29 1 1.0081 -1.7246 2.8119 30 1 -1.1396 -1.6750 4.0121 31 1 -3.2190 -2.2830 2.8445 32 1 -3.1591 -2.9341 0.4718 33 1 -1.0183 -2.9792 -0.7407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198621024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:16 Heat of formation + Delta-G solvation = 25.709037 kcal Electronic energy + Delta-G solvation = -17748.063439 eV Core-core repulsion = 14967.665303 eV Total energy + Delta-G solvation = -2780.398136 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37093 -39.44138 -37.88760 -36.53531 -33.69696 -33.26424 -31.52078 -30.16086 -26.88253 -24.15452 -23.21771 -23.15956 -22.22924 -21.44878 -19.87267 -18.99614 -17.24256 -17.13578 -16.58799 -16.21680 -16.12823 -15.36382 -15.17465 -14.95752 -14.58179 -14.06152 -13.61864 -13.40680 -13.20514 -12.88331 -12.66771 -12.42155 -12.30308 -12.19611 -12.05022 -11.93351 -11.36852 -11.25037 -10.91637 -10.09935 -9.51772 -9.50667 -9.11250 -8.07492 -5.94908 0.81655 0.85884 1.42878 1.47073 1.56765 2.07089 2.27286 2.41983 3.03501 3.15746 3.36758 3.59585 3.89995 4.15074 4.19076 4.27397 4.32121 4.43804 4.77801 4.78660 4.89210 4.93327 5.05118 5.14452 5.26407 5.36376 5.41442 5.70376 5.81778 5.83398 5.88188 6.08664 6.26806 6.45365 6.74872 7.17654 7.73921 8.09495 8.80403 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.009833 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.053316 B = 2846.936651 C = 4060.092866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.370 4.370 8 H 0.105 0.895 9 N -0.452 5.452 10 C 0.669 3.331 11 O -0.663 6.663 12 N -0.707 5.707 13 C 0.066 3.934 14 C -0.182 4.182 15 C -0.172 4.172 16 C 0.235 3.765 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.146 4.146 20 C -0.118 4.118 21 C -0.112 4.112 22 H 0.267 0.733 23 H 0.405 0.595 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 -2.304 0.387 5.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.202 4.202 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.123 0.877 9 N -0.171 5.171 10 C 0.372 3.628 11 O -0.549 6.549 12 N -0.361 5.361 13 C -0.040 4.040 14 C -0.221 4.221 15 C -0.210 4.210 16 C 0.143 3.857 17 C -0.170 4.170 18 C -0.133 4.133 19 C -0.165 4.165 20 C -0.137 4.137 21 C -0.132 4.132 22 H 0.078 0.922 23 H 0.242 0.758 24 H 0.129 0.871 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.018 -2.846 0.548 4.954 hybrid contribution 0.518 1.362 -0.384 1.507 sum 4.536 -1.484 0.164 4.775 Atomic orbital electron populations 1.70053 1.06973 1.28005 1.46303 1.26043 0.96225 1.02339 0.95546 0.85007 0.78245 0.77199 0.78374 1.19860 1.21238 1.18424 1.19664 0.94130 0.83431 1.52375 0.87718 1.40532 1.19871 1.04575 1.52171 1.16068 0.82772 0.83580 0.80349 1.90719 1.63784 1.33992 1.66382 1.44339 1.17362 1.09436 1.65000 1.21436 0.91017 0.87466 1.04105 1.23499 0.96102 1.03985 0.98506 1.23459 1.01144 1.04405 0.91988 1.17191 0.84956 0.93577 0.90001 1.21084 0.98510 1.03741 0.93666 1.21086 0.91795 1.00248 1.00219 1.21176 0.98651 1.02128 0.94498 1.21058 0.96550 1.00578 0.95518 1.20835 0.93187 1.01471 0.97711 0.92240 0.75774 0.87069 0.88453 0.86549 0.86182 0.88084 0.88176 0.84131 0.83445 0.84849 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.94 10.70 21.64 0.23 -46.71 16 2 C 0.00 0.14 5.16 84.89 0.44 0.58 16 3 Si 0.99 39.64 29.58 68.60 2.03 41.67 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.37 -18.84 9.12 84.00 0.77 -18.07 16 8 H 0.11 4.84 6.11 -2.91 -0.02 4.82 16 9 N -0.45 -24.01 2.68 -474.37 -1.27 -25.28 16 10 C 0.67 34.58 8.12 179.05 1.45 36.03 16 11 O -0.66 -37.71 15.53 -3.93 -0.06 -37.77 16 12 N -0.71 -29.32 5.46 -457.83 -2.50 -31.81 16 13 C 0.07 2.24 6.43 44.99 0.29 2.53 16 14 C -0.18 -4.49 10.46 30.62 0.32 -4.17 16 15 C -0.17 -4.12 10.46 30.62 0.32 -3.80 16 16 C 0.24 12.37 2.55 38.23 0.10 12.47 16 17 C -0.15 -7.18 9.49 22.41 0.21 -6.97 16 18 C -0.12 -4.59 10.04 22.25 0.22 -4.36 16 19 C -0.15 -5.48 10.04 22.31 0.22 -5.26 16 20 C -0.12 -4.97 10.04 22.25 0.22 -4.75 16 21 C -0.11 -5.71 8.71 22.41 0.20 -5.51 16 22 H 0.27 13.76 8.32 -92.70 -0.77 12.99 16 23 H 0.40 15.56 6.57 -92.71 -0.61 14.95 16 24 H 0.11 4.18 7.40 -2.39 -0.02 4.16 16 25 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 31 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.08 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -66.54 287.12 3.70 -62.83 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: 0.51 Total: 38.37 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 4.76 Total: -1.30 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.54 Total: -103.81 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.06 Total: -37.77 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -66.54 3.70 -62.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198621024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.542 kcal (2) G-P(sol) polarization free energy of solvation -66.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds