Wall clock time and date at job start Mon Mar 30 2020 03:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35812 * 117.00465 * 2 1 4 4 C 1.38938 * 119.90885 * 179.97438 * 3 2 1 5 5 C 1.37776 * 120.08981 * 179.97438 * 4 3 2 6 6 C 1.39714 * 119.90740 * 0.02562 * 5 4 3 7 7 C 1.47669 * 120.09397 * 180.02562 * 6 5 4 8 8 N 1.31854 * 126.61719 * 341.23833 * 7 6 5 9 9 N 1.28371 * 110.53144 * 180.02562 * 8 7 6 10 10 N 1.28847 * 110.74790 * 359.74909 * 9 8 7 11 11 N 1.37025 * 126.62497 * 161.26692 * 7 6 5 12 12 C 1.37262 * 127.50055 * 359.94186 * 11 7 6 13 13 H 1.08000 * 120.00197 * 336.10195 * 12 11 7 14 14 C 1.39079 * 120.00205 * 155.82284 * 12 11 7 15 15 N 1.31214 * 119.99791 * 355.09223 * 14 12 11 16 16 Si 1.86801 * 120.00374 * 175.09324 * 14 12 11 17 17 H 1.48493 * 109.47250 * 94.99666 * 16 14 12 18 18 H 1.48495 * 109.47208 * 215.00293 * 16 14 12 19 19 H 1.48508 * 109.46874 * 334.99723 * 16 14 12 20 20 C 1.39716 * 119.81738 * 0.26998 * 6 5 4 21 21 C 1.37774 * 119.90595 * 359.42672 * 20 6 5 22 22 H 1.09001 * 109.47597 * 300.00558 * 1 2 3 23 23 H 1.09008 * 109.46932 * 60.00404 * 1 2 3 24 24 H 1.08998 * 109.47306 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.95811 * 359.97438 * 4 3 2 26 26 H 1.08006 * 120.04438 * 180.02562 * 5 4 3 27 27 H 0.97009 * 119.99688 * 179.97438 * 15 14 12 28 28 H 1.08001 * 120.05070 * 179.70480 * 20 6 5 29 29 H 1.08000 * 119.95828 * 180.30029 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 3.4332 1.2804 0.0005 5 6 4.0627 2.5060 0.0000 6 6 3.3036 3.6790 -0.0005 7 6 3.9740 4.9947 -0.0017 8 7 5.2240 5.2408 0.3381 9 7 5.4837 6.4927 0.2233 10 7 4.4491 7.1370 -0.1945 11 7 3.4171 6.1956 -0.3555 12 6 2.1327 6.4283 -0.7803 13 1 1.5602 5.6310 -1.2309 14 6 1.5665 7.6891 -0.6251 15 7 2.2230 8.6290 0.0131 16 14 -0.1285 8.0445 -1.3252 17 1 -1.1524 7.8442 -0.2685 18 1 -0.1811 9.4485 -1.8058 19 1 -0.3993 7.1231 -2.4580 20 6 1.9085 3.6037 0.0052 21 6 1.2869 2.3741 -0.0006 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 4.0192 0.3733 0.0014 26 1 5.1414 2.5599 0.0000 27 1 1.8283 9.5086 0.1210 28 1 1.3181 4.5080 0.0096 29 1 0.2086 2.3150 -0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213282199.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:16 Heat of formation + Delta-G solvation = 71.936938 kcal Electronic energy + Delta-G solvation = -17015.168633 eV Core-core repulsion = 14133.234747 eV Total energy + Delta-G solvation = -2881.933887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.98328 -40.92511 -38.37879 -36.59225 -33.98647 -32.91934 -32.05605 -30.32094 -28.30784 -27.97652 -24.56959 -23.91050 -23.12768 -21.70323 -20.24892 -18.99297 -17.96158 -17.14893 -16.96459 -16.58147 -16.46840 -16.05742 -15.39879 -14.64971 -14.54934 -14.03922 -13.86860 -13.69730 -13.49414 -13.32916 -12.77266 -12.75065 -12.50645 -12.15653 -12.11248 -11.93697 -11.52071 -11.25609 -10.87554 -10.68640 -9.97679 -9.00981 -8.87693 -6.85152 0.00064 0.42079 0.97139 1.34422 1.53324 1.58669 1.90415 1.91628 2.32882 2.41573 2.67400 2.93826 3.62064 3.91418 3.96280 4.17750 4.37810 4.47490 4.49928 4.62723 4.72813 4.80146 4.84276 4.95774 5.10449 5.21280 5.32997 5.44821 5.70201 5.72570 5.77495 6.34525 6.47718 6.84185 8.12493 8.28824 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.008055 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.718488 B = 3475.269283 C = 4744.208855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.129 3.871 4 C -0.149 4.149 5 C -0.056 4.056 6 C -0.049 4.049 7 C 0.109 3.891 8 N -0.356 5.356 9 N -0.161 5.161 10 N -0.165 5.165 11 N -0.163 5.163 12 C -0.324 4.324 13 H 0.160 0.840 14 C 0.008 3.992 15 N -0.806 5.806 16 Si 1.026 2.974 17 H -0.249 1.249 18 H -0.270 1.270 19 H -0.236 1.236 20 C -0.081 4.081 21 C -0.196 4.196 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.122 0.878 25 H 0.155 0.845 26 H 0.132 0.868 27 H 0.297 0.703 28 H 0.142 0.858 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 -13.519 -2.186 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.082 3.918 4 C -0.168 4.168 5 C -0.076 4.076 6 C -0.053 4.053 7 C -0.154 4.154 8 N -0.219 5.219 9 N -0.151 5.151 10 N -0.150 5.150 11 N 0.058 4.942 12 C -0.463 4.463 13 H 0.177 0.823 14 C -0.209 4.209 15 N -0.433 5.433 16 Si 0.841 3.159 17 H -0.173 1.173 18 H -0.195 1.195 19 H -0.159 1.159 20 C -0.101 4.101 21 C -0.214 4.214 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.140 0.860 25 H 0.173 0.827 26 H 0.150 0.850 27 H 0.108 0.892 28 H 0.159 0.841 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.064 -12.622 -1.847 16.886 hybrid contribution -0.978 0.679 -0.212 1.209 sum -12.042 -11.943 -2.059 17.085 Atomic orbital electron populations 1.23403 0.76361 1.05739 1.02468 1.86023 1.23552 1.26082 1.88342 1.19233 0.92339 0.84672 0.95540 1.20454 0.91883 0.97993 1.06453 1.21009 1.00218 0.90129 0.96272 1.17535 0.93342 0.86910 1.07468 1.23570 0.92072 0.90190 1.09565 1.74017 1.13929 1.09214 1.24747 1.77398 1.20747 0.99196 1.17766 1.82644 0.90497 1.13530 1.28314 1.47888 1.10261 1.04148 1.31942 1.21250 0.84644 1.01159 1.39271 0.82280 1.27275 1.05906 0.93720 0.93996 1.70114 1.39811 1.04624 1.28708 0.84497 0.72477 0.79250 0.79685 1.17257 1.19471 1.15884 1.21528 0.92770 0.99411 0.96364 1.21333 1.01435 0.90538 1.08139 0.91699 0.91547 0.85961 0.82700 0.84988 0.89188 0.84068 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 15 2 O -0.33 -7.30 10.49 -91.44 -0.96 -8.25 15 3 C 0.13 3.44 6.69 22.61 0.15 3.59 15 4 C -0.15 -4.27 9.97 22.33 0.22 -4.05 15 5 C -0.06 -1.98 9.70 22.52 0.22 -1.77 15 6 C -0.05 -2.02 5.87 -20.07 -0.12 -2.14 15 7 C 0.11 5.70 7.77 136.17 1.06 6.76 15 8 N -0.36 -20.02 12.00 -50.96 -0.61 -20.63 15 9 N -0.16 -9.73 13.35 37.02 0.49 -9.24 15 10 N -0.17 -10.19 12.34 37.02 0.46 -9.73 15 11 N -0.16 -9.06 3.71 -183.36 -0.68 -9.74 15 12 C -0.32 -15.78 8.58 84.05 0.72 -15.06 15 13 H 0.16 6.61 5.79 -2.91 -0.02 6.59 15 14 C 0.01 0.38 5.48 84.99 0.47 0.85 15 15 N -0.81 -42.10 12.34 21.67 0.27 -41.83 15 16 Si 1.03 32.59 29.55 68.60 2.03 34.62 15 17 H -0.25 -7.29 7.11 99.48 0.71 -6.58 15 18 H -0.27 -8.60 7.11 99.48 0.71 -7.90 15 19 H -0.24 -6.74 7.11 99.48 0.71 -6.03 15 20 C -0.08 -2.83 8.83 22.52 0.20 -2.63 15 21 C -0.20 -5.27 9.02 22.33 0.20 -5.07 15 22 H 0.06 0.78 7.65 -2.39 -0.02 0.76 15 23 H 0.07 0.78 7.65 -2.38 -0.02 0.76 15 24 H 0.12 1.02 8.14 -2.39 -0.02 1.00 15 25 H 0.16 3.58 8.06 -2.91 -0.02 3.56 15 26 H 0.13 4.70 7.98 -2.91 -0.02 4.67 15 27 H 0.30 13.87 8.30 -92.70 -0.77 13.10 15 28 H 0.14 5.06 5.08 -2.91 -0.01 5.05 15 29 H 0.16 3.14 6.28 -2.91 -0.02 3.12 15 Total: -1.00 -71.33 261.76 6.42 -64.90 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.20 Total: 18.10 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.23 Total: -18.21 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -0.07 Total: -91.17 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.96 Total: -8.25 kcal Atomic # 14 Polarization: 32.59 SS G_CDS: 2.03 Total: 34.62 kcal Total: -71.33 6.42 -64.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213282199.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.841 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds