Wall clock time and date at job start Mon Mar 30 2020 04:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86796 * 119.99961 * 2 1 4 4 H 1.48498 * 109.47282 * 240.00192 * 3 2 1 5 5 H 1.48500 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47101 * 120.00090 * 3 2 1 7 7 C 1.39925 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99684 * 193.09784 * 7 2 1 9 9 C 1.41041 * 120.00090 * 13.09503 * 7 2 1 10 10 C 1.40728 * 120.30740 * 28.28682 * 9 7 2 11 11 C 1.36451 * 119.94939 * 180.27449 * 10 9 7 12 12 C 1.38898 * 120.60130 * 359.72196 * 11 10 9 13 13 C 1.38166 * 120.62230 * 0.02562 * 12 11 10 14 14 C 1.38751 * 120.02676 * 0.02562 * 13 12 11 15 15 N 1.38731 * 120.29419 * 180.02562 * 14 13 12 16 16 C 1.47200 * 110.97816 * 250.43682 * 15 14 13 17 17 C 1.52984 * 108.72058 * 54.36191 * 16 15 14 18 18 N 1.46009 * 110.04026 * 50.30975 * 17 16 15 19 19 C 1.33708 * 122.93072 * 341.81306 * 18 17 16 20 20 O 1.21278 * 118.63100 * 181.71333 * 19 18 17 21 21 C 1.46898 * 111.00102 * 13.32372 * 15 14 13 22 22 H 0.97005 * 119.99422 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.02921 * 0.02562 * 10 9 7 24 24 H 1.08003 * 119.70281 * 179.74679 * 11 10 9 25 25 H 1.07994 * 119.68909 * 179.97438 * 12 11 10 26 26 H 1.08003 * 119.98805 * 180.02562 * 13 12 11 27 27 H 1.09001 * 109.58464 * 294.60042 * 16 15 14 28 28 H 1.09002 * 109.61083 * 174.14373 * 16 15 14 29 29 H 1.08999 * 109.37098 * 290.13269 * 17 16 15 30 30 H 1.08998 * 109.37128 * 170.48614 * 17 16 15 31 31 H 0.96999 * 118.53039 * 161.84187 * 18 17 16 32 32 H 1.08999 * 109.38839 * 166.77749 * 21 15 14 33 33 H 1.09000 * 109.38738 * 47.09380 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0673 -1.2241 0.2114 9 6 1.3307 -2.4172 -0.2778 10 6 0.1879 -2.4167 -1.0991 11 6 -0.4654 -3.5864 -1.3581 12 6 -0.0100 -4.7842 -0.8223 13 6 1.1124 -4.8135 -0.0171 14 6 1.7961 -3.6392 0.2639 15 7 2.9240 -3.6623 1.0713 16 6 2.6527 -3.0324 2.3738 17 6 1.4349 -3.7113 3.0034 18 7 1.6046 -5.1613 2.9838 19 6 2.4831 -5.7797 2.1879 20 8 2.5373 -6.9910 2.2125 21 6 3.4059 -5.0366 1.2636 22 1 -0.4849 0.8401 0.0004 23 1 -0.1741 -1.4908 -1.5209 24 1 -1.3444 -3.5808 -1.9856 25 1 -0.5386 -5.7012 -1.0365 26 1 1.4578 -5.7507 0.3937 27 1 2.4467 -1.9716 2.2308 28 1 3.5173 -3.1543 3.0263 29 1 0.5407 -3.4441 2.4402 30 1 1.3254 -3.3738 4.0340 31 1 1.0551 -5.7001 3.5744 32 1 4.4068 -5.0121 1.6944 33 1 3.4406 -5.5459 0.3005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215783058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:23 Heat of formation + Delta-G solvation = 3.324073 kcal Electronic energy + Delta-G solvation = -18363.296489 eV Core-core repulsion = 15581.927668 eV Total energy + Delta-G solvation = -2781.368820 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60630 -37.88335 -36.03662 -33.86698 -33.58974 -30.16352 -29.16273 -28.58544 -25.81324 -24.84559 -22.83441 -20.91298 -20.49914 -18.63783 -17.54770 -16.89190 -16.08054 -15.59484 -15.09181 -14.93559 -14.52444 -14.03749 -13.72000 -13.14968 -12.83718 -12.49561 -12.27186 -11.95429 -11.64278 -11.24556 -11.16358 -11.09895 -11.00997 -10.84183 -10.49914 -10.10250 -9.65710 -9.61324 -9.24479 -8.72212 -8.34812 -7.46055 -6.98315 -6.69993 -4.38273 2.70848 2.84492 2.97853 3.04056 3.07039 3.18547 3.61691 3.89114 4.54621 4.65470 4.96327 5.39285 5.45503 5.54712 5.72470 5.75521 5.93354 6.12325 6.29196 6.33229 6.46090 6.54934 6.90207 7.04898 7.08181 7.18175 7.30074 7.45520 7.62893 7.68228 7.90909 8.05027 8.18610 8.24352 8.52405 8.62724 8.82406 8.96736 10.14423 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.009150 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.968166 B = 3059.405003 C = 3652.082433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.446 4.446 8 H 0.087 0.913 9 C 0.120 3.880 10 C -0.146 4.146 11 C -0.115 4.115 12 C -0.221 4.221 13 C -0.130 4.130 14 C -0.033 4.033 15 N -0.453 5.453 16 C 0.039 3.961 17 C 0.079 3.921 18 N -0.715 5.715 19 C 0.499 3.501 20 O -0.574 6.574 21 C 0.039 3.961 22 H 0.280 0.720 23 H 0.120 0.880 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.392 0.608 32 H 0.102 0.898 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 -0.408 4.326 4.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.476 4.476 8 H 0.105 0.895 9 C 0.117 3.883 10 C -0.166 4.166 11 C -0.134 4.134 12 C -0.241 4.241 13 C -0.151 4.151 14 C -0.129 4.129 15 N -0.170 5.170 16 C -0.088 4.088 17 C -0.046 4.046 18 N -0.367 5.367 19 C 0.285 3.715 20 O -0.454 6.454 21 C -0.092 4.092 22 H 0.091 0.909 23 H 0.138 0.862 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.227 0.773 32 H 0.120 0.880 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.723 -0.412 3.989 4.847 hybrid contribution -0.715 0.128 0.633 0.964 sum 2.007 -0.284 4.623 5.048 Atomic orbital electron populations 1.69824 1.07448 1.29234 1.35999 1.25947 0.94752 1.01239 0.92542 0.86367 0.80021 0.80299 0.80046 1.18908 1.20587 1.18989 1.19458 0.96905 0.89944 1.41300 0.89478 1.17242 0.91471 0.90684 0.88935 1.21023 0.98432 0.96764 1.00373 1.20447 0.99025 0.93426 1.00526 1.20214 1.00223 0.96507 1.07188 1.20914 0.96514 0.96197 1.01447 1.18592 0.95155 0.94715 1.04450 1.59469 1.31764 1.13875 1.11861 1.22619 0.94976 1.02258 0.88927 1.22115 1.01945 0.79149 1.01405 1.45539 1.40180 1.08741 1.42190 1.21209 0.81325 0.88346 0.80585 1.90699 1.70980 1.14652 1.69070 1.22464 0.97727 0.89568 0.99469 0.90898 0.86210 0.89541 0.89678 0.89005 0.86468 0.91293 0.90288 0.91140 0.77337 0.87958 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.03 10.94 55.55 0.61 -18.42 16 2 C 0.07 1.65 5.21 -17.32 -0.09 1.56 16 3 Si 0.91 17.47 29.58 -169.99 -5.03 12.45 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.45 -10.60 6.80 -37.89 -0.26 -10.86 16 8 H 0.09 2.04 7.49 -52.49 -0.39 1.65 16 9 C 0.12 2.92 5.48 -106.64 -0.58 2.34 16 10 C -0.15 -3.58 8.60 -39.29 -0.34 -3.92 16 11 C -0.12 -2.64 9.96 -39.98 -0.40 -3.04 16 12 C -0.22 -4.97 10.04 -39.36 -0.40 -5.37 16 13 C -0.13 -2.90 7.90 -39.42 -0.31 -3.21 16 14 C -0.03 -0.73 3.88 -83.29 -0.32 -1.06 16 15 N -0.45 -8.78 4.50 -171.99 -0.77 -9.56 16 16 C 0.04 0.66 5.69 -3.67 -0.02 0.64 16 17 C 0.08 1.27 6.55 -4.32 -0.03 1.25 16 18 N -0.72 -11.75 5.29 -61.06 -0.32 -12.08 16 19 C 0.50 9.24 4.99 -11.67 -0.06 9.18 16 20 O -0.57 -12.23 17.77 5.56 0.10 -12.13 16 21 C 0.04 0.68 5.44 -5.19 -0.03 0.65 16 22 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 23 H 0.12 3.04 6.27 -52.49 -0.33 2.71 16 24 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 25 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.09 2.02 4.63 -52.48 -0.24 1.78 16 27 H 0.12 2.18 6.24 -51.93 -0.32 1.85 16 28 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 29 H 0.08 1.51 7.42 -51.93 -0.39 1.12 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.39 5.80 8.84 -40.82 -0.36 5.44 16 32 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.11 1.98 7.19 -51.93 -0.37 1.61 16 LS Contribution 266.81 15.07 4.02 4.02 Total: -1.00 -27.10 266.81 -7.89 -34.98 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -3.65 Total: 12.58 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.83 Total: -11.84 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.49 Total: -40.06 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.10 Total: -12.13 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.10 -7.89 -34.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215783058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.307 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds