Wall clock time and date at job start Mon Mar 30 2020 04:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86796 * 119.99961 * 2 1 4 4 H 1.48498 * 109.47282 * 240.00192 * 3 2 1 5 5 H 1.48500 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47101 * 120.00090 * 3 2 1 7 7 C 1.39925 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99684 * 193.09784 * 7 2 1 9 9 C 1.41041 * 120.00090 * 13.09503 * 7 2 1 10 10 C 1.40728 * 120.30740 * 28.28682 * 9 7 2 11 11 C 1.36451 * 119.94939 * 180.27449 * 10 9 7 12 12 C 1.38898 * 120.60130 * 359.72196 * 11 10 9 13 13 C 1.38166 * 120.62230 * 0.02562 * 12 11 10 14 14 C 1.38751 * 120.02676 * 0.02562 * 13 12 11 15 15 N 1.38731 * 120.29419 * 180.02562 * 14 13 12 16 16 C 1.47200 * 110.97816 * 250.43682 * 15 14 13 17 17 C 1.52984 * 108.72058 * 54.36191 * 16 15 14 18 18 N 1.46009 * 110.04026 * 50.30975 * 17 16 15 19 19 C 1.33708 * 122.93072 * 341.81306 * 18 17 16 20 20 O 1.21278 * 118.63100 * 181.71333 * 19 18 17 21 21 C 1.46898 * 111.00102 * 13.32372 * 15 14 13 22 22 H 0.97005 * 119.99422 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.02921 * 0.02562 * 10 9 7 24 24 H 1.08003 * 119.70281 * 179.74679 * 11 10 9 25 25 H 1.07994 * 119.68909 * 179.97438 * 12 11 10 26 26 H 1.08003 * 119.98805 * 180.02562 * 13 12 11 27 27 H 1.09001 * 109.58464 * 294.60042 * 16 15 14 28 28 H 1.09002 * 109.61083 * 174.14373 * 16 15 14 29 29 H 1.08999 * 109.37098 * 290.13269 * 17 16 15 30 30 H 1.08998 * 109.37128 * 170.48614 * 17 16 15 31 31 H 0.96999 * 118.53039 * 161.84187 * 18 17 16 32 32 H 1.08999 * 109.38839 * 166.77749 * 21 15 14 33 33 H 1.09000 * 109.38738 * 47.09380 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0673 -1.2241 0.2114 9 6 1.3307 -2.4172 -0.2778 10 6 0.1879 -2.4167 -1.0991 11 6 -0.4654 -3.5864 -1.3581 12 6 -0.0100 -4.7842 -0.8223 13 6 1.1124 -4.8135 -0.0171 14 6 1.7961 -3.6392 0.2639 15 7 2.9240 -3.6623 1.0713 16 6 2.6527 -3.0324 2.3738 17 6 1.4349 -3.7113 3.0034 18 7 1.6046 -5.1613 2.9838 19 6 2.4831 -5.7797 2.1879 20 8 2.5373 -6.9910 2.2125 21 6 3.4059 -5.0366 1.2636 22 1 -0.4849 0.8401 0.0004 23 1 -0.1741 -1.4908 -1.5209 24 1 -1.3444 -3.5808 -1.9856 25 1 -0.5386 -5.7012 -1.0365 26 1 1.4578 -5.7507 0.3937 27 1 2.4467 -1.9716 2.2308 28 1 3.5173 -3.1543 3.0263 29 1 0.5407 -3.4441 2.4402 30 1 1.3254 -3.3738 4.0340 31 1 1.0551 -5.7001 3.5744 32 1 4.4068 -5.0121 1.6944 33 1 3.4406 -5.5459 0.3005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215783058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:22 Heat of formation + Delta-G solvation = -14.555270 kcal Electronic energy + Delta-G solvation = -18364.071795 eV Core-core repulsion = 15581.927668 eV Total energy + Delta-G solvation = -2782.144127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11257 -39.52561 -37.63650 -35.53067 -35.15020 -31.85100 -30.73138 -30.23517 -27.47539 -26.43888 -24.29721 -22.68839 -22.12665 -20.15232 -19.25734 -18.40726 -17.52381 -17.25945 -16.67545 -16.49230 -16.01903 -15.71170 -15.31279 -14.66978 -14.45422 -14.13764 -13.79180 -13.45308 -13.29613 -12.86702 -12.77243 -12.70931 -12.58385 -12.29088 -12.09594 -11.69104 -11.40221 -11.33783 -10.96722 -10.12331 -9.96821 -9.28240 -8.69099 -8.40340 -6.18825 0.98558 1.06789 1.47880 1.51178 1.56446 1.60368 2.24870 2.28144 2.82011 3.13967 3.56380 3.74618 4.07740 4.13031 4.27932 4.39475 4.46443 4.57098 4.61602 4.71007 4.97820 5.09352 5.18067 5.31571 5.44746 5.52993 5.68483 5.81497 5.92657 6.17986 6.22823 6.28568 6.42054 6.48562 6.83457 7.03535 7.10402 7.19868 8.42950 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.009150 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.968166 B = 3059.405003 C = 3652.082433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.038 3.962 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.460 4.460 8 H 0.086 0.914 9 C 0.094 3.906 10 C -0.170 4.170 11 C -0.122 4.122 12 C -0.230 4.230 13 C -0.138 4.138 14 C -0.020 4.020 15 N -0.463 5.463 16 C 0.039 3.961 17 C 0.086 3.914 18 N -0.706 5.706 19 C 0.498 3.502 20 O -0.605 6.605 21 C 0.040 3.960 22 H 0.285 0.715 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.110 0.890 31 H 0.401 0.599 32 H 0.135 0.865 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -0.055 5.532 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.177 4.177 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.104 0.896 9 C 0.091 3.909 10 C -0.190 4.190 11 C -0.140 4.140 12 C -0.250 4.250 13 C -0.158 4.158 14 C -0.117 4.117 15 N -0.179 5.179 16 C -0.087 4.087 17 C -0.039 4.039 18 N -0.356 5.356 19 C 0.285 3.715 20 O -0.487 6.487 21 C -0.090 4.090 22 H 0.095 0.905 23 H 0.122 0.878 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.237 0.763 32 H 0.152 0.848 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.729 -0.057 5.216 6.412 hybrid contribution -1.040 -0.025 0.278 1.077 sum 2.688 -0.082 5.495 6.118 Atomic orbital electron populations 1.69889 1.08761 1.30224 1.36472 1.26642 0.95314 1.03983 0.91720 0.85369 0.78706 0.76361 0.80040 1.19317 1.20218 1.17837 1.19544 0.96822 0.90478 1.42120 0.89573 1.17537 0.91964 0.91886 0.89562 1.21005 0.99639 0.96741 1.01659 1.20625 0.99513 0.93143 1.00752 1.20469 1.00492 0.96975 1.07028 1.21025 0.96662 0.96442 1.01698 1.18680 0.95264 0.93894 1.03861 1.59388 1.30510 1.15038 1.12967 1.22659 0.96725 1.01114 0.88183 1.22054 0.99979 0.78706 1.03134 1.45479 1.39532 1.09008 1.41589 1.21331 0.81600 0.87920 0.80633 1.90691 1.72047 1.15871 1.70088 1.22528 0.99015 0.88225 0.99246 0.90474 0.87811 0.87852 0.88056 0.88596 0.88078 0.87929 0.93618 0.87200 0.76261 0.84777 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.81 10.94 21.83 0.24 -39.57 16 2 C 0.04 1.73 5.21 85.24 0.44 2.18 16 3 Si 0.97 35.29 29.58 68.60 2.03 37.32 16 4 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.28 -9.81 7.11 99.48 0.71 -9.11 16 6 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 7 C -0.46 -21.90 6.80 23.37 0.16 -21.74 16 8 H 0.09 4.01 7.49 -2.91 -0.02 3.98 16 9 C 0.09 4.62 5.48 -21.17 -0.12 4.51 16 10 C -0.17 -8.54 8.60 22.46 0.19 -8.35 16 11 C -0.12 -5.61 9.96 22.01 0.22 -5.39 16 12 C -0.23 -10.25 10.04 22.41 0.22 -10.02 16 13 C -0.14 -6.07 7.90 22.38 0.18 -5.89 16 14 C -0.02 -0.90 3.88 38.99 0.15 -0.75 16 15 N -0.46 -17.23 4.50 -698.05 -3.14 -20.37 16 16 C 0.04 1.24 5.69 86.24 0.49 1.73 16 17 C 0.09 2.59 6.55 86.47 0.57 3.16 16 18 N -0.71 -21.66 5.29 -466.10 -2.47 -24.13 16 19 C 0.50 17.50 4.99 87.69 0.44 17.93 16 20 O -0.60 -24.87 17.77 -3.02 -0.05 -24.92 16 21 C 0.04 1.34 5.44 85.42 0.46 1.81 16 22 H 0.28 12.64 8.30 -92.70 -0.77 11.87 16 23 H 0.10 5.45 6.27 -2.91 -0.02 5.43 16 24 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 25 H 0.10 4.11 8.06 -2.91 -0.02 4.08 16 26 H 0.10 4.14 4.63 -2.91 -0.01 4.13 16 27 H 0.10 3.62 6.24 -2.39 -0.01 3.60 16 28 H 0.10 2.59 8.08 -2.39 -0.02 2.57 16 29 H 0.05 1.71 7.42 -2.39 -0.02 1.69 16 30 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.40 11.01 8.84 -92.71 -0.82 10.19 16 32 H 0.13 3.59 8.14 -2.39 -0.02 3.57 16 33 H 0.10 3.52 7.19 -2.39 -0.02 3.50 16 Total: -1.00 -57.77 266.81 0.34 -57.43 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.32 Total: 35.07 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.41 Total: -20.84 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -5.37 Total: -84.06 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -57.77 0.34 -57.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215783058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.873 kcal (2) G-P(sol) polarization free energy of solvation -57.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds