Wall clock time and date at job start Mon Mar 30 2020 04:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99770 * 2 1 4 4 H 1.48507 * 109.46968 * 239.99798 * 3 2 1 5 5 H 1.48501 * 109.47417 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47197 * 120.00015 * 3 2 1 7 7 C 1.37869 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00326 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.38576 * 59.78526 * 9 7 2 11 11 C 1.50264 * 109.38248 * 299.99980 * 9 7 2 12 12 O 1.21276 * 118.62577 * 42.74484 * 11 9 7 13 13 N 1.33716 * 122.74652 * 222.76639 * 11 9 7 14 14 C 1.46004 * 122.92941 * 1.66324 * 13 11 9 15 15 C 1.52979 * 110.04558 * 341.83944 * 14 13 11 16 16 N 1.46833 * 109.34774 * 179.36900 * 9 7 2 17 17 C 1.39672 * 111.10700 * 293.69833 * 16 9 7 18 18 C 1.38910 * 120.07734 * 112.74514 * 17 16 9 19 19 C 1.38108 * 119.92600 * 179.76465 * 18 17 16 20 20 C 1.38291 * 120.06761 * 0.51135 * 19 18 17 21 21 C 1.38277 * 120.15597 * 359.74167 * 20 19 18 22 22 C 1.38106 * 120.07251 * 0.02562 * 21 20 19 23 23 H 0.97006 * 120.00209 * 0.02562 * 1 2 3 24 24 H 0.96998 * 118.53079 * 181.64108 * 13 11 9 25 25 H 1.09002 * 109.37397 * 221.65884 * 14 13 11 26 26 H 1.09002 * 109.37342 * 102.01533 * 14 13 11 27 27 H 1.09002 * 109.59633 * 170.06553 * 15 14 13 28 28 H 1.09003 * 109.59335 * 290.36858 * 15 14 13 29 29 H 1.07997 * 120.03793 * 0.02562 * 18 17 16 30 30 H 1.07994 * 119.96350 * 180.25283 * 19 18 17 31 31 H 1.08001 * 119.91514 * 179.71984 * 20 19 18 32 32 H 1.07995 * 119.96679 * 180.02562 * 21 20 19 33 33 H 1.07999 * 120.03467 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6224 -2.5540 -0.8882 11 6 0.3875 -2.5764 1.2278 12 8 -0.2319 -1.5900 1.5654 13 7 0.2738 -3.6872 1.9634 14 6 1.0038 -4.9157 1.6640 15 6 1.5086 -4.8870 0.2201 16 7 2.2076 -3.6130 -0.0141 17 6 2.9217 -3.6471 -1.2140 18 6 4.2846 -3.3786 -1.2210 19 6 4.9885 -3.4179 -2.4085 20 6 4.3359 -3.7138 -3.5913 21 6 2.9783 -3.9764 -3.5888 22 6 2.2693 -3.9435 -2.4041 23 1 -0.4851 0.8401 -0.0004 24 1 -0.3200 -3.6762 2.7304 25 1 0.3422 -5.7715 1.7989 26 1 1.8524 -5.0064 2.3420 27 1 2.1963 -5.7167 0.0567 28 1 0.6643 -4.9718 -0.4640 29 1 4.7940 -3.1436 -0.2981 30 1 6.0489 -3.2133 -2.4140 31 1 4.8880 -3.7394 -4.5192 32 1 2.4718 -4.2075 -4.5142 33 1 1.2089 -4.1483 -2.4028 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221013768.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:41 Heat of formation + Delta-G solvation = 28.554549 kcal Electronic energy + Delta-G solvation = -18177.217061 eV Core-core repulsion = 15396.942316 eV Total energy + Delta-G solvation = -2780.274745 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74383 -38.13144 -35.74683 -33.98023 -32.14909 -30.41544 -29.19410 -28.90872 -25.93553 -23.58737 -22.42645 -21.95060 -20.62289 -18.21037 -16.93569 -16.43630 -16.02963 -15.52825 -14.96127 -14.45389 -14.30455 -14.02294 -13.51871 -13.35762 -12.95390 -12.48442 -12.30953 -12.12457 -11.63203 -11.43569 -11.15862 -10.85817 -10.77747 -10.70753 -10.54033 -9.87429 -9.47983 -8.47866 -8.39342 -8.15377 -8.00287 -7.92077 -7.64845 -5.84228 -3.92589 1.86233 1.94125 3.40270 3.43848 3.46127 4.17689 4.28703 4.34849 4.51487 4.64940 5.33652 5.38899 5.42711 5.44668 5.53765 5.56337 5.77084 5.87147 5.94550 6.07665 6.23522 6.27991 6.39472 6.55392 6.83546 6.96022 6.98591 7.17165 7.33552 7.44654 7.89663 7.98810 8.12836 8.31990 8.59293 9.01910 9.66528 9.84042 11.16552 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.011769 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.889313 B = 2378.482632 C = 3564.543796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.075 3.925 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.068 0.932 9 C 0.223 3.777 10 H 0.031 0.969 11 C 0.507 3.493 12 O -0.485 6.485 13 N -0.752 5.752 14 C 0.128 3.872 15 C 0.040 3.960 16 N -0.501 5.501 17 C 0.136 3.864 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.150 4.150 23 H 0.257 0.743 24 H 0.377 0.623 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 -11.007 -2.984 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.086 0.914 9 C 0.116 3.884 10 H 0.048 0.952 11 C 0.293 3.707 12 O -0.353 6.353 13 N -0.410 5.410 14 C 0.002 3.998 15 C -0.088 4.088 16 N -0.224 5.224 17 C 0.042 3.958 18 C -0.111 4.111 19 C -0.138 4.138 20 C -0.157 4.157 21 C -0.133 4.133 22 C -0.170 4.170 23 H 0.067 0.933 24 H 0.211 0.789 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.032 -10.198 -2.597 11.665 hybrid contribution -0.415 0.699 -0.259 0.853 sum 4.618 -9.499 -2.855 10.941 Atomic orbital electron populations 1.70210 1.05666 1.26120 1.43684 1.24932 0.94743 0.99080 0.94713 0.86613 0.79515 0.83023 0.78522 1.20257 1.21388 1.20243 1.20496 0.92970 0.87746 1.55694 0.91428 1.19425 0.88191 0.89267 0.91565 0.95193 1.21774 0.81794 0.81371 0.85751 1.90784 1.43866 1.32658 1.68038 1.46279 1.48705 1.12998 1.33018 1.21140 0.95568 0.87220 0.95854 1.22409 0.97311 0.93082 0.95978 1.60193 1.28073 1.03028 1.31149 1.18687 0.92995 0.95712 0.88425 1.21008 0.93196 0.98870 0.98028 1.20990 0.99433 1.00750 0.92657 1.20964 0.94737 1.02363 0.97683 1.20874 0.94364 1.00800 0.97296 1.21619 0.99621 1.02336 0.93424 0.93269 0.78875 0.92022 0.92453 0.90174 0.94490 0.85787 0.86569 0.86945 0.86940 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -25.15 10.29 55.43 0.57 -24.58 16 2 C 0.07 2.17 4.97 -17.82 -0.09 2.08 16 3 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.53 -15.02 8.13 -34.44 -0.28 -15.30 16 8 H 0.07 1.90 7.22 -52.48 -0.38 1.53 16 9 C 0.22 5.67 1.86 -70.26 -0.13 5.54 16 10 H 0.03 0.85 7.33 -51.93 -0.38 0.47 16 11 C 0.51 12.96 7.36 -11.67 -0.09 12.88 16 12 O -0.49 -14.46 13.79 5.56 0.08 -14.39 16 13 N -0.75 -14.90 5.52 -61.07 -0.34 -15.24 16 14 C 0.13 1.98 7.39 -4.32 -0.03 1.95 16 15 C 0.04 0.66 5.06 -3.68 -0.02 0.65 16 16 N -0.50 -10.42 4.44 -166.27 -0.74 -11.16 16 17 C 0.14 2.65 3.95 -83.79 -0.33 2.32 16 18 C -0.09 -1.66 9.51 -39.38 -0.37 -2.03 16 19 C -0.12 -1.85 10.04 -39.61 -0.40 -2.25 16 20 C -0.14 -2.06 10.04 -39.55 -0.40 -2.45 16 21 C -0.11 -1.80 10.04 -39.62 -0.40 -2.20 16 22 C -0.15 -2.71 8.58 -39.38 -0.34 -3.05 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.38 6.80 8.84 -40.82 -0.36 6.44 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 28 H 0.04 0.62 7.38 -51.93 -0.38 0.24 16 29 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.11 2.01 7.14 -52.49 -0.37 1.63 16 LS Contribution 274.60 15.07 4.14 4.14 Total: -1.00 -33.37 274.60 -8.15 -41.52 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.97 Total: 4.13 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.87 Total: -1.87 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.51 Total: -50.97 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.39 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.37 -8.15 -41.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221013768.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.072 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds