Wall clock time and date at job start Mon Mar 30 2020 04:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99770 * 2 1 4 4 H 1.48507 * 109.46968 * 239.99798 * 3 2 1 5 5 H 1.48501 * 109.47417 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47197 * 120.00015 * 3 2 1 7 7 C 1.37869 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00326 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.38576 * 59.78526 * 9 7 2 11 11 C 1.50264 * 109.38248 * 299.99980 * 9 7 2 12 12 O 1.21276 * 118.62577 * 42.74484 * 11 9 7 13 13 N 1.33716 * 122.74652 * 222.76639 * 11 9 7 14 14 C 1.46004 * 122.92941 * 1.66324 * 13 11 9 15 15 C 1.52979 * 110.04558 * 341.83944 * 14 13 11 16 16 N 1.46833 * 109.34774 * 179.36900 * 9 7 2 17 17 C 1.39672 * 111.10700 * 293.69833 * 16 9 7 18 18 C 1.38910 * 120.07734 * 112.74514 * 17 16 9 19 19 C 1.38108 * 119.92600 * 179.76465 * 18 17 16 20 20 C 1.38291 * 120.06761 * 0.51135 * 19 18 17 21 21 C 1.38277 * 120.15597 * 359.74167 * 20 19 18 22 22 C 1.38106 * 120.07251 * 0.02562 * 21 20 19 23 23 H 0.97006 * 120.00209 * 0.02562 * 1 2 3 24 24 H 0.96998 * 118.53079 * 181.64108 * 13 11 9 25 25 H 1.09002 * 109.37397 * 221.65884 * 14 13 11 26 26 H 1.09002 * 109.37342 * 102.01533 * 14 13 11 27 27 H 1.09002 * 109.59633 * 170.06553 * 15 14 13 28 28 H 1.09003 * 109.59335 * 290.36858 * 15 14 13 29 29 H 1.07997 * 120.03793 * 0.02562 * 18 17 16 30 30 H 1.07994 * 119.96350 * 180.25283 * 19 18 17 31 31 H 1.08001 * 119.91514 * 179.71984 * 20 19 18 32 32 H 1.07995 * 119.96679 * 180.02562 * 21 20 19 33 33 H 1.07999 * 120.03467 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6224 -2.5540 -0.8882 11 6 0.3875 -2.5764 1.2278 12 8 -0.2319 -1.5900 1.5654 13 7 0.2738 -3.6872 1.9634 14 6 1.0038 -4.9157 1.6640 15 6 1.5086 -4.8870 0.2201 16 7 2.2076 -3.6130 -0.0141 17 6 2.9217 -3.6471 -1.2140 18 6 4.2846 -3.3786 -1.2210 19 6 4.9885 -3.4179 -2.4085 20 6 4.3359 -3.7138 -3.5913 21 6 2.9783 -3.9764 -3.5888 22 6 2.2693 -3.9435 -2.4041 23 1 -0.4851 0.8401 -0.0004 24 1 -0.3200 -3.6762 2.7304 25 1 0.3422 -5.7715 1.7989 26 1 1.8524 -5.0064 2.3420 27 1 2.1963 -5.7167 0.0567 28 1 0.6643 -4.9718 -0.4640 29 1 4.7940 -3.1436 -0.2981 30 1 6.0489 -3.2133 -2.4140 31 1 4.8880 -3.7394 -4.5192 32 1 2.4718 -4.2075 -4.5142 33 1 1.2089 -4.1483 -2.4028 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221013768.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:41 Heat of formation + Delta-G solvation = 4.127546 kcal Electronic energy + Delta-G solvation = -18178.276295 eV Core-core repulsion = 15396.942316 eV Total energy + Delta-G solvation = -2781.333979 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32747 -39.70864 -37.40088 -35.70632 -34.16424 -31.69721 -30.71298 -30.59141 -27.67375 -25.38804 -24.03136 -23.28260 -22.03568 -19.92882 -18.61618 -18.23141 -17.60653 -17.19657 -16.43285 -16.25623 -15.86221 -15.61429 -15.30634 -14.78087 -14.31095 -14.17829 -14.04089 -13.63925 -13.23581 -12.92558 -12.79105 -12.68404 -12.52918 -12.20989 -11.98826 -11.79492 -11.46235 -10.57647 -10.11880 -9.69999 -9.67315 -9.39151 -9.25794 -8.01338 -6.14978 0.55504 0.64577 1.37794 1.41976 1.48342 2.22592 2.48843 2.72263 2.96121 3.13495 3.29418 4.02505 4.14014 4.19372 4.24031 4.37143 4.46524 4.55310 4.69738 4.75259 4.81198 4.93384 4.98299 5.12421 5.28060 5.58025 5.60892 5.72314 5.78633 5.83945 6.08029 6.31546 6.33918 6.61657 6.76253 6.93146 7.47825 7.93275 8.98682 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.011769 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.889313 B = 2378.482632 C = 3564.543796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.021 3.979 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.229 3.771 10 H -0.006 1.006 11 C 0.500 3.500 12 O -0.539 6.539 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.035 3.965 16 N -0.505 5.505 17 C 0.104 3.896 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.132 4.132 21 C -0.116 4.116 22 C -0.168 4.168 23 H 0.251 0.749 24 H 0.390 0.610 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.031 0.969 29 H 0.119 0.881 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.054 -12.439 -3.741 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.121 3.879 10 H 0.011 0.989 11 C 0.286 3.714 12 O -0.413 6.413 13 N -0.395 5.395 14 C -0.001 4.001 15 C -0.091 4.091 16 N -0.228 5.228 17 C 0.011 3.989 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.150 4.150 21 C -0.135 4.135 22 C -0.188 4.188 23 H 0.061 0.939 24 H 0.225 0.775 25 H 0.127 0.873 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.050 0.950 29 H 0.137 0.863 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.995 -11.710 -3.348 14.045 hybrid contribution -0.945 0.978 -0.081 1.363 sum 6.050 -10.731 -3.430 12.788 Atomic orbital electron populations 1.70396 1.07151 1.26257 1.45341 1.25759 0.95511 1.02550 0.94605 0.85674 0.78355 0.79064 0.78874 1.18925 1.21223 1.19957 1.20785 0.92847 0.89320 1.54913 0.91979 1.19039 0.88354 0.90378 0.90158 0.98916 1.21654 0.81374 0.82115 0.86218 1.90745 1.45864 1.35078 1.69575 1.45985 1.48360 1.12983 1.32219 1.21534 0.96763 0.86422 0.95335 1.22610 0.97714 0.92229 0.96595 1.60100 1.27041 1.03308 1.32342 1.18885 0.93710 0.97900 0.88446 1.21144 0.92923 0.99735 0.99138 1.21372 1.00926 0.99295 0.91849 1.21422 0.94399 1.00221 0.98943 1.21234 0.95116 0.99825 0.97326 1.21667 0.99427 1.03445 0.94229 0.93944 0.77537 0.87270 0.90845 0.87036 0.95037 0.86310 0.83438 0.83185 0.84353 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -54.46 10.29 21.44 0.22 -54.23 16 2 C 0.02 1.27 4.97 84.65 0.42 1.69 16 3 Si 0.96 46.98 29.54 68.60 2.03 49.01 16 4 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.54 -31.44 8.13 25.60 0.21 -31.23 16 8 H 0.06 3.57 7.22 -2.91 -0.02 3.55 16 9 C 0.23 12.06 1.86 43.30 0.08 12.14 16 10 H -0.01 -0.37 7.33 -2.39 -0.02 -0.39 16 11 C 0.50 26.24 7.36 87.69 0.65 26.89 16 12 O -0.54 -33.43 13.79 -3.02 -0.04 -33.47 16 13 N -0.74 -28.81 5.52 -466.10 -2.57 -31.38 16 14 C 0.12 3.50 7.39 86.47 0.64 4.14 16 15 C 0.04 1.14 5.06 86.24 0.44 1.57 16 16 N -0.50 -21.07 4.44 -679.97 -3.02 -24.09 16 17 C 0.10 4.06 3.95 38.21 0.15 4.21 16 18 C -0.11 -3.87 9.51 22.40 0.21 -3.66 16 19 C -0.12 -3.26 10.04 22.25 0.22 -3.03 16 20 C -0.13 -3.43 10.04 22.29 0.22 -3.21 16 21 C -0.12 -3.41 10.04 22.25 0.22 -3.19 16 22 C -0.17 -6.03 8.58 22.40 0.19 -5.84 16 23 H 0.25 15.44 8.31 -92.70 -0.77 14.67 16 24 H 0.39 13.67 8.84 -92.71 -0.82 12.85 16 25 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.11 2.86 8.04 -2.39 -0.02 2.84 16 28 H 0.03 1.04 7.38 -2.39 -0.02 1.03 16 29 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 30 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.10 3.77 7.14 -2.91 -0.02 3.75 16 Total: -1.00 -75.97 274.60 0.57 -75.40 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.30 Total: 18.28 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 3.66 Total: 0.49 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -5.37 Total: -109.71 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.04 Total: -33.47 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -75.97 0.57 -75.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221013768.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.523 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds