Wall clock time and date at job start Mon Mar 30 2020 03:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47125 * 2 1 4 4 H 1.08995 * 109.47176 * 305.38239 * 3 2 1 5 5 C 1.50699 * 109.47227 * 185.37993 * 3 2 1 6 6 H 1.07998 * 120.00681 * 240.00094 * 5 3 2 7 7 C 1.37878 * 119.99773 * 60.00268 * 5 3 2 8 8 N 1.31523 * 119.99858 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00157 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47302 * 59.99641 * 9 7 5 11 11 H 1.48502 * 109.46888 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46808 * 299.99824 * 9 7 5 13 13 S 1.81404 * 109.47225 * 65.38400 * 3 2 1 14 14 O 1.42101 * 109.46980 * 290.99865 * 13 3 2 15 15 C 1.81398 * 103.00103 * 174.61056 * 13 3 2 16 16 C 1.52995 * 109.47172 * 175.22844 * 15 13 3 17 17 H 1.09007 * 109.99132 * 306.08678 * 16 15 13 18 18 C 1.54104 * 109.88189 * 184.99666 * 16 15 13 19 19 C 1.54806 * 104.19065 * 238.54679 * 18 16 15 20 20 C 1.54996 * 102.12391 * 339.10143 * 19 18 16 21 21 O 1.43745 * 109.88102 * 67.16624 * 16 15 13 22 22 H 1.09004 * 109.46899 * 53.37265 * 1 2 3 23 23 H 1.09006 * 109.47279 * 173.36637 * 1 2 3 24 24 H 1.09000 * 109.47274 * 293.37235 * 1 2 3 25 25 H 1.09002 * 109.47455 * 239.99661 * 2 1 3 26 26 H 1.09002 * 109.46974 * 120.00011 * 2 1 3 27 27 H 0.96998 * 119.99929 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47174 * 55.22936 * 15 13 3 29 29 H 1.08998 * 109.47117 * 295.22310 * 15 13 3 30 30 H 1.09004 * 110.48414 * 119.86760 * 18 16 15 31 31 H 1.09004 * 110.48474 * 357.22745 * 18 16 15 32 32 H 1.08996 * 110.90855 * 97.31293 * 19 18 16 33 33 H 1.09000 * 110.90931 * 220.88697 * 19 18 16 34 34 H 1.09001 * 110.62154 * 155.54211 * 20 19 18 35 35 H 1.09005 * 110.61651 * 278.54093 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 3.5411 1.4446 -0.1332 6 1 4.1513 1.8874 0.6400 7 6 4.1355 0.8812 -1.2424 8 7 3.3924 0.3415 -2.1839 9 14 5.9962 0.8831 -1.4073 10 1 6.5950 0.1458 -0.2659 11 1 6.3809 0.2227 -2.6805 12 1 6.4916 2.2830 -1.4069 13 16 1.5699 2.2501 1.5548 14 8 0.1614 2.4354 1.5853 15 6 2.3898 3.8641 1.4405 16 6 1.9906 4.7251 2.6406 17 1 0.9045 4.7823 2.7134 18 6 2.5810 6.1405 2.4896 19 6 3.4566 6.3233 3.7532 20 6 2.8593 5.2680 4.7185 21 8 2.5324 4.1627 3.8474 22 1 -0.3633 0.6131 -0.8248 23 1 -0.3634 -1.0208 -0.1187 24 1 -0.3634 0.4077 0.9433 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8106 -0.0546 -2.9644 28 1 2.0860 4.3616 0.5194 29 1 3.4706 3.7232 1.4380 30 1 1.7853 6.8852 2.4658 31 1 3.1922 6.2049 1.5893 32 1 4.5022 6.1047 3.5368 33 1 3.3473 7.3286 4.1601 34 1 3.5972 4.9665 5.4619 35 1 1.9618 5.6543 5.2018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234012307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:17 Heat of formation + Delta-G solvation = -99.739184 kcal Electronic energy + Delta-G solvation = -16536.121327 eV Core-core repulsion = 13853.434549 eV Total energy + Delta-G solvation = -2682.686778 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19518 -34.66618 -34.50317 -32.14779 -31.60796 -31.15903 -27.59414 -25.65460 -23.22998 -22.04589 -20.99373 -20.11781 -16.91917 -16.53916 -16.05747 -15.55250 -15.32773 -15.03495 -14.22960 -13.56181 -13.49559 -13.18419 -12.69816 -12.36656 -12.19162 -11.80499 -11.65237 -11.56604 -11.24422 -11.15224 -10.99533 -10.84169 -10.71065 -10.57631 -10.35005 -10.11033 -9.77814 -9.52009 -9.16116 -8.59756 -8.38538 -6.96148 -6.09668 -4.23400 2.65713 3.25672 3.31156 3.32451 3.85102 4.01172 4.33703 4.64320 4.80281 4.93372 5.05325 5.18296 5.27586 5.37451 5.63939 5.68085 5.73354 5.79836 5.99074 6.10984 6.15079 6.23319 6.35150 6.53186 6.58949 6.90713 7.05399 7.08273 7.11157 7.47517 7.70180 7.83274 8.17719 8.79352 9.42183 10.94708 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.008275 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.435514 B = 3383.000326 C = 4396.086220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.218 4.218 4 H 0.043 0.957 5 C -0.510 4.510 6 H 0.070 0.930 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.276 1.276 13 S 1.192 4.808 14 O -0.886 6.886 15 C -0.431 4.431 16 C 0.099 3.901 17 H 0.068 0.932 18 C -0.150 4.150 19 C -0.155 4.155 20 C 0.045 3.955 21 O -0.366 6.366 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.089 0.911 29 H 0.125 0.875 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 7.435 10.206 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.138 4.138 3 C -0.340 4.340 4 H 0.061 0.939 5 C -0.549 4.549 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.202 1.202 13 S 1.396 4.604 14 O -0.881 6.881 15 C -0.566 4.566 16 C 0.041 3.959 17 H 0.086 0.914 18 C -0.189 4.189 19 C -0.193 4.193 20 C -0.032 4.032 21 O -0.286 6.286 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.383 6.799 10.824 12.856 hybrid contribution 0.307 1.443 -2.309 2.740 sum 1.690 8.242 8.515 11.970 Atomic orbital electron populations 1.22088 0.98773 0.99674 1.01734 1.21289 0.91774 0.97267 1.03491 1.24716 1.02007 1.00060 1.07191 0.93913 1.20570 0.88477 1.39643 1.06169 0.91164 1.24981 0.98269 0.94675 0.95475 1.69885 1.35219 1.37500 1.09229 0.86609 0.85136 0.78431 0.77633 1.19648 1.21308 1.20161 1.70114 0.90194 0.92083 1.07981 1.92916 1.27442 1.83000 1.84777 1.27586 1.12129 1.17294 0.99639 1.22284 0.97244 0.91697 0.84704 0.91377 1.23042 0.99656 0.96857 0.99312 1.23127 1.00616 0.99722 0.95810 1.23538 0.99006 0.87116 0.93521 1.88929 1.83234 1.29484 1.26910 0.93910 0.94352 0.92517 0.87881 0.93651 0.92700 0.89238 0.85673 0.91118 0.90049 0.90312 0.90676 0.88918 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 9.36 37.16 0.35 -3.33 16 2 C -0.10 -2.34 5.24 -26.73 -0.14 -2.48 16 3 C -0.22 -5.31 2.27 -27.88 -0.06 -5.37 16 4 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 5 C -0.51 -12.72 8.06 -34.44 -0.28 -13.00 16 6 H 0.07 1.61 6.72 -52.49 -0.35 1.26 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.29 11.29 55.43 0.63 -23.66 16 9 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 S 1.19 24.80 12.14 -107.50 -1.31 23.50 16 14 O -0.89 -21.87 15.93 -35.23 -0.56 -22.43 16 15 C -0.43 -7.88 4.90 37.16 0.18 -7.70 16 16 C 0.10 1.60 3.40 -26.16 -0.09 1.51 16 17 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 18 C -0.15 -1.92 6.64 -25.20 -0.17 -2.09 16 19 C -0.16 -1.64 7.15 -24.73 -0.18 -1.82 16 20 C 0.05 0.51 7.73 38.21 0.30 0.81 16 21 O -0.37 -5.73 11.02 -35.23 -0.39 -6.12 16 22 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.27 6.06 -51.93 -0.31 0.96 16 25 H 0.10 2.70 5.94 -51.93 -0.31 2.39 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 29 H 0.12 2.21 7.15 -51.93 -0.37 1.83 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.05 7.70 -51.93 -0.40 0.65 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 292.67 15.07 4.41 4.41 Total: -1.00 -30.89 292.67 -7.95 -38.84 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.53 Total: 2.31 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: -0.18 Total: -31.73 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.63 Total: -23.66 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.95 Total: -28.55 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 24.80 SS G_CDS: -1.31 Total: 23.50 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.89 -7.95 -38.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234012307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.898 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds