Wall clock time and date at job start Mon Mar 30 2020 04:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99978 * 2 1 4 4 H 1.48506 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47150 * 299.99868 * 3 2 1 6 6 H 1.48497 * 109.47441 * 60.00502 * 3 2 1 7 7 C 1.37880 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00121 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46783 * 180.02562 * 9 7 2 11 11 C 1.38103 * 110.99534 * 160.44272 * 10 9 7 12 12 N 1.32427 * 119.85440 * 65.42201 * 11 10 9 13 13 C 1.31826 * 121.80343 * 179.97438 * 12 11 10 14 14 C 1.38467 * 121.29236 * 0.02562 * 13 12 11 15 15 C 1.38210 * 119.54567 * 359.97438 * 14 13 12 16 16 C 1.40311 * 118.33944 * 359.73010 * 15 14 13 17 17 C 1.46645 * 120.64005 * 180.28461 * 16 15 14 18 18 O 1.21322 * 119.99994 * 4.38165 * 17 16 15 19 19 C 1.46901 * 110.99787 * 284.39052 * 10 9 7 20 20 C 1.52999 * 117.49363 * 111.25950 * 19 10 9 21 21 C 1.52999 * 117.49765 * 179.91535 * 19 10 9 22 22 H 0.97003 * 119.99959 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47142 * 59.99979 * 9 7 2 24 24 H 1.09001 * 109.46742 * 299.99946 * 9 7 2 25 25 H 1.07998 * 119.35518 * 179.97438 * 13 12 11 26 26 H 1.08000 * 120.22812 * 180.02562 * 14 13 12 27 27 H 1.07999 * 120.83131 * 180.02562 * 15 14 13 28 28 H 1.07995 * 120.00062 * 184.38209 * 17 16 15 29 29 H 1.08996 * 115.54983 * 325.58757 * 19 10 9 30 30 H 1.09006 * 117.49751 * 215.00146 * 20 19 10 31 31 H 1.09004 * 117.50347 * 0.02562 * 20 19 10 32 32 H 1.09006 * 117.49587 * 359.97438 * 21 19 10 33 33 H 1.08992 * 117.50098 * 144.99959 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.6037 -4.7814 0.4311 12 7 0.6382 -5.3308 -0.2898 13 6 0.0379 -6.4428 0.0855 14 6 0.3909 -7.0905 1.2573 15 6 1.3921 -6.5645 2.0517 16 6 2.0237 -5.3838 1.6327 17 6 3.0966 -4.7853 2.4335 18 8 3.5004 -5.3525 3.4271 19 6 2.8067 -3.7943 -1.3290 20 6 4.2922 -3.4617 -1.4825 21 6 3.8288 -4.9205 -1.4962 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8902 24 1 0.6246 -2.5571 0.8897 25 1 -0.7452 -6.8563 -0.5327 26 1 -0.1121 -8.0009 1.5482 27 1 1.6843 -7.0527 2.9697 28 1 3.5271 -3.8397 2.1389 29 1 2.1526 -3.5787 -2.1738 30 1 4.6155 -3.0272 -2.4285 31 1 4.8235 -3.1108 -0.5978 32 1 4.0554 -5.5286 -0.6204 33 1 3.8472 -5.4458 -2.4511 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236407368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:40 Heat of formation + Delta-G solvation = 43.484929 kcal Electronic energy + Delta-G solvation = -17623.301758 eV Core-core repulsion = 14843.674443 eV Total energy + Delta-G solvation = -2779.627315 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40981 -38.29367 -37.41003 -34.11706 -32.61290 -32.20350 -30.01570 -26.72823 -25.02007 -23.11264 -22.33322 -21.83039 -20.97994 -19.99733 -17.27087 -16.66481 -16.34700 -15.74807 -15.47773 -14.82369 -14.49982 -14.25581 -13.99255 -13.65127 -13.11805 -13.06712 -12.46912 -12.34594 -11.99238 -11.49603 -11.10641 -10.91037 -10.79703 -10.21215 -10.06602 -9.81308 -9.69348 -9.60979 -9.44337 -9.10269 -8.66700 -8.50802 -7.82734 -6.08531 -4.10719 0.72810 1.40810 2.75607 3.28818 3.36619 3.40732 4.00917 4.08247 4.33409 4.46033 4.56810 4.82754 4.99904 5.13044 5.22800 5.29518 5.41984 5.50431 5.61410 5.77825 5.86895 5.96855 6.09269 6.24702 6.31055 6.43477 6.57420 6.62601 7.06961 7.21147 7.68119 7.72599 7.83663 8.00202 8.17976 8.37381 8.96369 9.53445 11.02125 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.007308 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.478719 B = 3830.299276 C = 3885.960227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.069 0.931 9 C 0.207 3.793 10 N -0.473 5.473 11 C 0.377 3.623 12 N -0.516 5.516 13 C 0.143 3.857 14 C -0.209 4.209 15 C -0.017 4.017 16 C -0.231 4.231 17 C 0.402 3.598 18 O -0.482 6.482 19 C 0.049 3.951 20 C -0.153 4.153 21 C -0.194 4.194 22 H 0.262 0.738 23 H 0.013 0.987 24 H 0.028 0.972 25 H 0.153 0.847 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -11.718 -0.655 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.087 0.913 9 C 0.085 3.915 10 N -0.197 5.197 11 C 0.149 3.851 12 N -0.228 5.228 13 C -0.017 4.017 14 C -0.230 4.230 15 C -0.043 4.043 16 C -0.236 4.236 17 C 0.262 3.738 18 O -0.357 6.357 19 C -0.059 4.059 20 C -0.191 4.191 21 C -0.232 4.232 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.171 0.829 26 H 0.153 0.847 27 H 0.158 0.842 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.223 -11.327 -0.575 11.791 hybrid contribution -0.316 0.368 0.096 0.495 sum 2.907 -10.959 -0.479 11.348 Atomic orbital electron populations 1.69974 1.06098 1.26849 1.50666 1.24982 0.94856 0.99359 0.95339 0.86411 0.80104 0.83236 0.77506 1.19500 1.21100 1.21060 1.21123 0.93794 0.89180 1.50380 0.91274 1.19833 0.89017 0.85429 0.97266 1.60047 1.33706 1.01397 1.24567 1.20394 0.86249 0.89891 0.88599 1.68111 1.08831 1.11234 1.34647 1.22849 0.95679 0.89826 0.93345 1.21987 1.00759 1.02846 0.97360 1.21777 0.91935 0.92504 0.98073 1.21628 1.03730 0.98828 0.99383 1.23994 0.79142 0.89510 0.81105 1.90460 1.57107 1.63422 1.24721 1.22144 0.91394 1.01786 0.90597 1.22974 0.97198 0.96018 1.02901 1.23079 1.05734 0.92215 1.02165 0.92867 0.96865 0.95395 0.82950 0.84739 0.84218 0.85995 0.88645 0.89018 0.88243 0.89569 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.46 9.00 -34.44 -0.31 -13.77 16 8 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.21 5.18 4.57 -4.97 -0.02 5.16 16 10 N -0.47 -9.69 3.64 -166.72 -0.61 -10.30 16 11 C 0.38 7.10 4.53 -155.22 -0.70 6.40 16 12 N -0.52 -9.39 9.86 -12.14 -0.12 -9.51 16 13 C 0.14 2.02 11.16 -17.47 -0.20 1.82 16 14 C -0.21 -2.61 10.08 -39.51 -0.40 -3.01 16 15 C -0.02 -0.24 9.71 -38.81 -0.38 -0.62 16 16 C -0.23 -3.93 5.90 -104.75 -0.62 -4.54 16 17 C 0.40 6.88 11.17 34.12 0.38 7.26 16 18 O -0.48 -8.86 17.24 5.52 0.10 -8.76 16 19 C 0.05 0.90 4.64 -67.71 -0.31 0.59 16 20 C -0.15 -2.46 10.46 -26.70 -0.28 -2.73 16 21 C -0.19 -2.96 9.85 -26.70 -0.26 -3.22 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.01 0.37 7.83 -51.93 -0.41 -0.04 16 24 H 0.03 0.77 7.91 -51.93 -0.41 0.36 16 25 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 26 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.14 1.77 7.73 -52.49 -0.41 1.37 16 28 H 0.12 2.06 7.59 -52.49 -0.40 1.67 16 29 H 0.10 1.91 7.89 -51.93 -0.41 1.50 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.09 1.32 7.98 -51.93 -0.41 0.91 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -30.19 295.04 -7.77 -37.96 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.11 Total: 0.64 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.20 Total: -5.21 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.01 Total: -45.06 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.10 Total: -8.76 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.19 -7.77 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236407368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.444 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds