Wall clock time and date at job start Mon Mar 30 2020 04:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99978 * 2 1 4 4 H 1.48506 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47150 * 299.99868 * 3 2 1 6 6 H 1.48497 * 109.47441 * 60.00502 * 3 2 1 7 7 C 1.37880 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00121 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46783 * 180.02562 * 9 7 2 11 11 C 1.38103 * 110.99534 * 160.44272 * 10 9 7 12 12 N 1.32427 * 119.85440 * 65.42201 * 11 10 9 13 13 C 1.31826 * 121.80343 * 179.97438 * 12 11 10 14 14 C 1.38467 * 121.29236 * 0.02562 * 13 12 11 15 15 C 1.38210 * 119.54567 * 359.97438 * 14 13 12 16 16 C 1.40311 * 118.33944 * 359.73010 * 15 14 13 17 17 C 1.46645 * 120.64005 * 180.28461 * 16 15 14 18 18 O 1.21322 * 119.99994 * 4.38165 * 17 16 15 19 19 C 1.46901 * 110.99787 * 284.39052 * 10 9 7 20 20 C 1.52999 * 117.49363 * 111.25950 * 19 10 9 21 21 C 1.52999 * 117.49765 * 179.91535 * 19 10 9 22 22 H 0.97003 * 119.99959 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47142 * 59.99979 * 9 7 2 24 24 H 1.09001 * 109.46742 * 299.99946 * 9 7 2 25 25 H 1.07998 * 119.35518 * 179.97438 * 13 12 11 26 26 H 1.08000 * 120.22812 * 180.02562 * 14 13 12 27 27 H 1.07999 * 120.83131 * 180.02562 * 15 14 13 28 28 H 1.07995 * 120.00062 * 184.38209 * 17 16 15 29 29 H 1.08996 * 115.54983 * 325.58757 * 19 10 9 30 30 H 1.09006 * 117.49751 * 215.00146 * 20 19 10 31 31 H 1.09004 * 117.50347 * 0.02562 * 20 19 10 32 32 H 1.09006 * 117.49587 * 359.97438 * 21 19 10 33 33 H 1.08992 * 117.50098 * 144.99959 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.6037 -4.7814 0.4311 12 7 0.6382 -5.3308 -0.2898 13 6 0.0379 -6.4428 0.0855 14 6 0.3909 -7.0905 1.2573 15 6 1.3921 -6.5645 2.0517 16 6 2.0237 -5.3838 1.6327 17 6 3.0966 -4.7853 2.4335 18 8 3.5004 -5.3525 3.4271 19 6 2.8067 -3.7943 -1.3290 20 6 4.2922 -3.4617 -1.4825 21 6 3.8288 -4.9205 -1.4962 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8902 24 1 0.6246 -2.5571 0.8897 25 1 -0.7452 -6.8563 -0.5327 26 1 -0.1121 -8.0009 1.5482 27 1 1.6843 -7.0527 2.9697 28 1 3.5271 -3.8397 2.1389 29 1 2.1526 -3.5787 -2.1738 30 1 4.6155 -3.0272 -2.4285 31 1 4.8235 -3.1108 -0.5978 32 1 4.0554 -5.5286 -0.6204 33 1 3.8472 -5.4458 -2.4511 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236407368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:40 Heat of formation + Delta-G solvation = 25.035802 kcal Electronic energy + Delta-G solvation = -17624.101772 eV Core-core repulsion = 14843.674443 eV Total energy + Delta-G solvation = -2780.427329 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71716 -39.69238 -38.77280 -35.69048 -34.47327 -33.46758 -31.48238 -28.59504 -26.26434 -24.73065 -23.98940 -23.10633 -22.25127 -21.42755 -18.83501 -18.18531 -17.81168 -17.19868 -17.04562 -16.27794 -16.04219 -15.74982 -15.26877 -15.13327 -14.55465 -14.32598 -14.12653 -13.68574 -13.58000 -13.21152 -12.75137 -12.66951 -12.34273 -12.10015 -11.54650 -11.40346 -11.13099 -10.99301 -10.90813 -10.60055 -10.45257 -9.92703 -9.44425 -8.19043 -6.28800 -0.53103 0.21997 1.44150 1.45041 1.45130 1.58472 2.40279 2.75440 2.78093 2.97702 3.15896 3.30898 3.64516 3.89633 3.96657 4.04392 4.09899 4.24878 4.46845 4.51782 4.58449 4.74883 4.81784 4.94640 5.04557 5.07175 5.13648 5.22650 5.34733 5.51719 5.71527 6.02483 6.11278 6.34246 6.59302 6.85446 6.95195 7.40470 8.92517 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.007308 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.478719 B = 3830.299276 C = 3885.960227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.232 3.768 10 N -0.469 5.469 11 C 0.348 3.652 12 N -0.550 5.550 13 C 0.136 3.864 14 C -0.183 4.183 15 C -0.019 4.019 16 C -0.244 4.244 17 C 0.409 3.591 18 O -0.496 6.496 19 C 0.015 3.985 20 C -0.146 4.146 21 C -0.162 4.162 22 H 0.263 0.737 23 H -0.025 1.025 24 H -0.007 1.007 25 H 0.187 0.813 26 H 0.183 0.817 27 H 0.160 0.840 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.874 -13.217 -0.542 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.092 0.908 9 C 0.108 3.892 10 N -0.192 5.192 11 C 0.120 3.880 12 N -0.263 5.263 13 C -0.023 4.023 14 C -0.203 4.203 15 C -0.045 4.045 16 C -0.248 4.248 17 C 0.270 3.730 18 O -0.373 6.373 19 C -0.093 4.093 20 C -0.184 4.184 21 C -0.199 4.199 22 H 0.072 0.928 23 H -0.007 1.007 24 H 0.011 0.989 25 H 0.204 0.796 26 H 0.200 0.800 27 H 0.177 0.823 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.081 -12.854 -0.466 13.494 hybrid contribution -0.670 0.671 0.047 0.949 sum 3.411 -12.183 -0.419 12.658 Atomic orbital electron populations 1.70114 1.07869 1.27793 1.51949 1.25907 0.95644 1.03188 0.94906 0.85323 0.79320 0.78512 0.77420 1.18081 1.20737 1.20818 1.21435 0.94091 0.89989 1.49563 0.90754 1.19271 0.88923 0.87334 0.93702 1.59861 1.32450 1.01296 1.25595 1.20371 0.87712 0.90121 0.89768 1.68028 1.09436 1.13179 1.35645 1.23520 0.95722 0.88605 0.94492 1.22456 0.98973 1.03352 0.95491 1.22111 0.91954 0.91465 0.98943 1.21632 1.04318 1.00175 0.98720 1.23935 0.79018 0.89247 0.80776 1.90447 1.57723 1.63787 1.25294 1.22113 0.92243 1.05836 0.89121 1.23069 0.94829 0.96888 1.03620 1.23073 1.02074 0.91596 1.03175 0.92805 1.00667 0.98877 0.79594 0.80003 0.82262 0.86436 0.91022 0.87338 0.88506 0.89437 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.51 -28.06 9.00 25.60 0.23 -27.83 16 8 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 9 C 0.23 12.27 4.57 85.56 0.39 12.67 16 10 N -0.47 -19.88 3.64 -681.39 -2.48 -22.37 16 11 C 0.35 13.32 4.53 133.78 0.61 13.92 16 12 N -0.55 -20.05 9.86 -192.34 -1.90 -21.94 16 13 C 0.14 3.53 11.16 84.75 0.95 4.48 16 14 C -0.18 -3.90 10.08 22.32 0.23 -3.67 16 15 C -0.02 -0.49 9.71 22.77 0.22 -0.27 16 16 C -0.24 -8.17 5.90 -19.95 -0.12 -8.29 16 17 C 0.41 13.98 11.17 70.02 0.78 14.76 16 18 O -0.50 -17.91 17.24 -3.16 -0.05 -17.97 16 19 C 0.01 0.55 4.64 44.91 0.21 0.76 16 20 C -0.15 -4.58 10.46 30.62 0.32 -4.26 16 21 C -0.16 -4.72 9.85 30.62 0.30 -4.42 16 22 H 0.26 14.85 8.31 -92.71 -0.77 14.07 16 23 H -0.02 -1.45 7.83 -2.39 -0.02 -1.47 16 24 H -0.01 -0.40 7.91 -2.39 -0.02 -0.42 16 25 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 26 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 27 H 0.16 3.54 7.73 -2.91 -0.02 3.52 16 28 H 0.12 4.08 7.59 -2.91 -0.02 4.06 16 29 H 0.07 3.02 7.89 -2.39 -0.02 3.00 16 30 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 31 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.09 2.56 7.98 -2.38 -0.02 2.54 16 33 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -67.92 295.04 3.56 -64.36 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.10 Total: 9.81 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 4.58 Total: -1.61 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -4.09 Total: -100.13 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.05 Total: -17.97 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -67.92 3.56 -64.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236407368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.400 kcal (2) G-P(sol) polarization free energy of solvation -67.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds