Wall clock time and date at job start Mon Mar 30 2020 03:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37780 * 119.56836 * 2 1 4 4 C 1.38546 * 121.12863 * 180.24913 * 3 2 1 5 5 C 1.41888 * 118.53248 * 359.43198 * 4 3 2 6 6 C 1.41149 * 120.14854 * 180.89740 * 5 4 3 7 7 H 1.07995 * 119.99330 * 212.94863 * 6 5 4 8 8 C 1.39919 * 120.00027 * 32.94563 * 6 5 4 9 9 N 1.30875 * 119.99596 * 20.15349 * 8 6 5 10 10 Si 1.86794 * 119.99652 * 200.15491 * 8 6 5 11 11 H 1.48498 * 109.47180 * 90.00467 * 10 8 6 12 12 H 1.48499 * 109.46800 * 209.99878 * 10 8 6 13 13 H 1.48498 * 109.47535 * 329.99715 * 10 8 6 14 14 C 1.40104 * 119.70288 * 0.91446 * 5 4 3 15 15 C 1.38115 * 120.80234 * 359.05318 * 14 5 4 16 16 O 1.36249 * 111.32223 * 181.08215 * 15 14 5 17 17 C 1.43786 * 109.16525 * 340.63900 * 16 15 14 18 18 C 1.51667 * 132.02906 * 178.54574 * 14 5 4 19 19 O 1.35849 * 111.45541 * 178.96808 * 4 3 2 20 20 C 1.43792 * 109.18461 * 19.31405 * 19 4 3 21 21 C 1.51770 * 131.93097 * 0.74774 * 3 2 1 22 22 H 1.08993 * 109.47829 * 269.98500 * 1 2 3 23 23 H 1.09009 * 109.47013 * 29.98481 * 1 2 3 24 24 H 1.09000 * 109.46849 * 149.97679 * 1 2 3 25 25 H 0.97002 * 119.99263 * 179.97438 * 9 8 6 26 26 H 1.08994 * 110.77554 * 269.51435 * 17 16 15 27 27 H 1.08997 * 110.93470 * 146.16509 * 17 16 15 28 28 H 1.08997 * 110.93786 * 313.69764 * 18 14 5 29 29 H 1.08994 * 110.94251 * 77.35426 * 18 14 5 30 30 H 1.09005 * 110.75999 * 90.48704 * 20 19 4 31 31 H 1.09002 * 110.76633 * 213.68930 * 20 19 4 32 32 H 1.08994 * 110.94046 * 282.57892 * 21 3 2 33 33 H 1.09003 * 110.93220 * 46.26615 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1984 0.0000 4 6 3.5718 1.2361 -0.0052 5 6 4.2833 0.0085 0.0019 6 6 5.6947 0.0072 0.0160 7 1 6.2389 -0.7781 -0.4873 8 6 6.3886 1.0234 0.6821 9 7 5.7856 1.7334 1.6014 10 14 8.1754 1.3664 0.2592 11 1 8.2417 2.3750 -0.8287 12 1 8.8771 1.8867 1.4600 13 1 8.8278 0.1103 -0.1899 14 6 3.5785 -1.2024 -0.0057 15 6 2.1975 -1.2169 -0.0003 16 8 1.7155 -2.4913 0.0147 17 6 2.7454 -3.3907 -0.4302 18 6 4.0414 -2.6465 -0.0298 19 8 4.0340 2.5134 -0.0269 20 6 2.9911 3.4008 0.4117 21 6 1.7054 2.6376 0.0147 22 1 -0.3634 -0.0003 1.0275 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 6.2668 2.4377 2.0634 26 1 2.6973 -3.5296 -1.5102 27 1 2.6749 -4.3487 0.0849 28 1 4.8214 -2.7931 -0.7770 29 1 4.3840 -2.9623 0.9555 30 1 3.0364 3.5466 1.4910 31 1 3.0527 4.3566 -0.1087 32 1 1.3603 2.9430 -0.9730 33 1 0.9228 2.7788 0.7602 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258051043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:38 Heat of formation + Delta-G solvation = -45.752767 kcal Electronic energy + Delta-G solvation = -18220.991358 eV Core-core repulsion = 15405.201655 eV Total energy + Delta-G solvation = -2815.789703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08543 -38.89092 -35.04414 -34.02798 -32.00615 -30.32744 -29.31837 -27.41087 -27.15451 -23.52295 -22.95234 -20.98022 -20.51079 -19.41676 -17.24448 -16.18122 -16.06165 -15.39853 -15.22337 -14.88903 -14.10122 -13.86488 -12.77793 -12.66970 -12.37145 -12.18136 -12.05493 -11.78889 -11.76293 -11.34731 -11.18322 -11.04250 -10.96167 -10.74181 -10.53825 -10.45860 -10.41686 -10.30231 -9.25297 -9.15961 -8.58724 -7.32539 -6.73884 -6.32740 -4.28751 2.64028 2.84384 3.11850 3.15146 3.19658 4.00593 4.24291 4.53336 4.79819 5.31194 5.42514 5.54904 5.65145 5.69504 5.77779 5.90359 6.06019 6.12673 6.18068 6.26587 6.41230 6.42469 6.54774 6.57335 6.63200 6.70780 6.93883 7.09535 7.22465 7.40802 7.61159 7.74888 7.89337 8.29982 8.32634 8.54931 8.87619 9.01840 10.25893 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.011143 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.008940 B = 2512.162101 C = 3718.448601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.174 4.174 3 C -0.138 4.138 4 C 0.049 3.951 5 C 0.145 3.855 6 C -0.463 4.463 7 H 0.079 0.921 8 C 0.083 3.917 9 N -0.763 5.763 10 Si 0.905 3.095 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.264 1.264 14 C -0.248 4.248 15 C 0.099 3.901 16 O -0.319 6.319 17 C 0.053 3.947 18 C -0.080 4.080 19 O -0.276 6.276 20 C 0.053 3.947 21 C -0.099 4.099 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.280 0.720 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 -0.745 -1.847 4.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.175 4.175 3 C -0.140 4.140 4 C 0.003 3.997 5 C 0.142 3.858 6 C -0.491 4.491 7 H 0.097 0.903 8 C -0.138 4.138 9 N -0.387 5.387 10 Si 0.730 3.270 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.188 1.188 14 C -0.250 4.250 15 C 0.055 3.945 16 O -0.235 6.235 17 C -0.023 4.023 18 C -0.117 4.117 19 O -0.189 6.189 20 C -0.023 4.023 21 C -0.136 4.136 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.476 -0.553 -1.661 3.892 hybrid contribution 0.842 0.289 0.008 0.890 sum -2.634 -0.264 -1.652 3.121 Atomic orbital electron populations 1.20292 0.93166 1.00313 0.99927 1.17277 0.93650 0.87988 1.18627 1.19809 0.93745 0.92693 1.07715 1.19313 0.89896 0.85053 1.05437 1.15895 0.92974 0.86024 0.90885 1.19296 0.90918 1.09000 1.29934 0.90286 1.25728 1.00447 0.94399 0.93218 1.69742 1.38474 1.15381 1.15065 0.86360 0.82150 0.79587 0.78898 1.19313 1.20530 1.18840 1.20008 0.91996 0.93519 1.19507 1.18777 0.91773 0.83653 1.00272 1.86666 1.38901 1.14770 1.83115 1.23638 0.86774 0.93008 0.98848 1.21288 0.96550 0.92531 1.01366 1.86801 1.36829 1.13684 1.81627 1.23506 0.86037 0.93500 0.99269 1.21590 0.98122 0.92743 1.01142 0.93815 0.93575 0.93281 0.90928 0.92106 0.89384 0.91045 0.91247 0.92249 0.90137 0.91075 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 9.85 36.01 0.35 -1.18 16 2 C -0.17 -4.04 5.91 -104.16 -0.62 -4.66 16 3 C -0.14 -3.27 6.05 -104.15 -0.63 -3.90 16 4 C 0.05 1.28 6.01 -38.07 -0.23 1.05 16 5 C 0.15 3.93 5.46 -106.70 -0.58 3.35 16 6 C -0.46 -12.40 8.79 -37.85 -0.33 -12.73 16 7 H 0.08 2.03 7.92 -52.49 -0.42 1.61 16 8 C 0.08 2.13 4.79 -17.33 -0.08 2.05 16 9 N -0.76 -20.10 10.93 55.55 0.61 -19.50 16 10 Si 0.91 19.27 29.60 -169.99 -5.03 14.24 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 13 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 14 C -0.25 -6.17 6.12 -103.49 -0.63 -6.80 16 15 C 0.10 2.38 6.72 -39.00 -0.26 2.12 16 16 O -0.32 -6.93 10.97 -20.54 -0.23 -7.15 16 17 C 0.05 0.93 8.02 38.06 0.31 1.24 16 18 C -0.08 -1.63 6.89 -26.50 -0.18 -1.81 16 19 O -0.28 -6.94 8.70 -19.27 -0.17 -7.11 16 20 C 0.05 1.05 8.01 38.05 0.30 1.36 16 21 C -0.10 -1.89 6.58 -26.46 -0.17 -2.06 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.79 7.73 -51.92 -0.40 0.39 16 24 H 0.05 0.90 7.99 -51.93 -0.42 0.49 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 275.94 15.07 4.16 4.16 Total: -1.00 -29.78 275.94 -7.59 -37.37 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.17 Total: -0.03 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.76 Total: -21.98 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.61 Total: -19.50 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.39 Total: -14.26 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.78 -7.59 -37.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258051043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.378 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds