Wall clock time and date at job start Mon Mar 30 2020 03:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37780 * 119.56836 * 2 1 4 4 C 1.38546 * 121.12863 * 180.24913 * 3 2 1 5 5 C 1.41888 * 118.53248 * 359.43198 * 4 3 2 6 6 C 1.41149 * 120.14854 * 180.89740 * 5 4 3 7 7 H 1.07995 * 119.99330 * 212.94863 * 6 5 4 8 8 C 1.39919 * 120.00027 * 32.94563 * 6 5 4 9 9 N 1.30875 * 119.99596 * 20.15349 * 8 6 5 10 10 Si 1.86794 * 119.99652 * 200.15491 * 8 6 5 11 11 H 1.48498 * 109.47180 * 90.00467 * 10 8 6 12 12 H 1.48499 * 109.46800 * 209.99878 * 10 8 6 13 13 H 1.48498 * 109.47535 * 329.99715 * 10 8 6 14 14 C 1.40104 * 119.70288 * 0.91446 * 5 4 3 15 15 C 1.38115 * 120.80234 * 359.05318 * 14 5 4 16 16 O 1.36249 * 111.32223 * 181.08215 * 15 14 5 17 17 C 1.43786 * 109.16525 * 340.63900 * 16 15 14 18 18 C 1.51667 * 132.02906 * 178.54574 * 14 5 4 19 19 O 1.35849 * 111.45541 * 178.96808 * 4 3 2 20 20 C 1.43792 * 109.18461 * 19.31405 * 19 4 3 21 21 C 1.51770 * 131.93097 * 0.74774 * 3 2 1 22 22 H 1.08993 * 109.47829 * 269.98500 * 1 2 3 23 23 H 1.09009 * 109.47013 * 29.98481 * 1 2 3 24 24 H 1.09000 * 109.46849 * 149.97679 * 1 2 3 25 25 H 0.97002 * 119.99263 * 179.97438 * 9 8 6 26 26 H 1.08994 * 110.77554 * 269.51435 * 17 16 15 27 27 H 1.08997 * 110.93470 * 146.16509 * 17 16 15 28 28 H 1.08997 * 110.93786 * 313.69764 * 18 14 5 29 29 H 1.08994 * 110.94251 * 77.35426 * 18 14 5 30 30 H 1.09005 * 110.75999 * 90.48704 * 20 19 4 31 31 H 1.09002 * 110.76633 * 213.68930 * 20 19 4 32 32 H 1.08994 * 110.94046 * 282.57892 * 21 3 2 33 33 H 1.09003 * 110.93220 * 46.26615 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1984 0.0000 4 6 3.5718 1.2361 -0.0052 5 6 4.2833 0.0085 0.0019 6 6 5.6947 0.0072 0.0160 7 1 6.2389 -0.7781 -0.4873 8 6 6.3886 1.0234 0.6821 9 7 5.7856 1.7334 1.6014 10 14 8.1754 1.3664 0.2592 11 1 8.2417 2.3750 -0.8287 12 1 8.8771 1.8867 1.4600 13 1 8.8278 0.1103 -0.1899 14 6 3.5785 -1.2024 -0.0057 15 6 2.1975 -1.2169 -0.0003 16 8 1.7155 -2.4913 0.0147 17 6 2.7454 -3.3907 -0.4302 18 6 4.0414 -2.6465 -0.0298 19 8 4.0340 2.5134 -0.0269 20 6 2.9911 3.4008 0.4117 21 6 1.7054 2.6376 0.0147 22 1 -0.3634 -0.0003 1.0275 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 6.2668 2.4377 2.0634 26 1 2.6973 -3.5296 -1.5102 27 1 2.6749 -4.3487 0.0849 28 1 4.8214 -2.7931 -0.7770 29 1 4.3840 -2.9623 0.9555 30 1 3.0364 3.5466 1.4910 31 1 3.0527 4.3566 -0.1087 32 1 1.3603 2.9430 -0.9730 33 1 0.9228 2.7788 0.7602 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258051043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:38 Heat of formation + Delta-G solvation = -63.257044 kcal Electronic energy + Delta-G solvation = -18221.750400 eV Core-core repulsion = 15405.201655 eV Total energy + Delta-G solvation = -2816.548745 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.80923 -40.58499 -36.81087 -35.82741 -33.78215 -31.94432 -31.00936 -29.08423 -28.91056 -25.31856 -24.52460 -22.56796 -22.30716 -21.17670 -19.07300 -17.90279 -17.82004 -16.98515 -16.92628 -16.61320 -15.80849 -15.50468 -14.46852 -14.27881 -14.04309 -13.81073 -13.65571 -13.52879 -13.37809 -13.07156 -12.84907 -12.72795 -12.55264 -12.35967 -12.17276 -12.08275 -12.08109 -11.93373 -11.06265 -10.95761 -10.31232 -9.16649 -8.60215 -8.14064 -6.23786 0.81462 1.00611 1.37526 1.48168 1.49425 2.24137 2.60898 2.70875 3.12315 3.50000 3.83975 4.01292 4.09446 4.22450 4.33694 4.39015 4.46910 4.53068 4.69149 4.77073 4.87371 4.94140 4.99535 5.07094 5.07432 5.15364 5.21063 5.27313 5.42838 5.66516 5.84045 5.90808 6.04345 6.41341 6.57354 6.66348 6.95919 7.18578 8.41446 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.011143 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.008940 B = 2512.162101 C = 3718.448601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.182 4.182 3 C -0.149 4.149 4 C 0.016 3.984 5 C 0.104 3.896 6 C -0.499 4.499 7 H 0.073 0.927 8 C 0.044 3.956 9 N -0.797 5.797 10 Si 0.972 3.028 11 H -0.270 1.270 12 H -0.269 1.269 13 H -0.258 1.258 14 C -0.270 4.270 15 C 0.082 3.918 16 O -0.326 6.326 17 C 0.056 3.944 18 C -0.082 4.082 19 O -0.304 6.304 20 C 0.046 3.954 21 C -0.088 4.088 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.284 0.716 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 -0.782 -2.286 5.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.184 4.184 3 C -0.150 4.150 4 C -0.029 4.029 5 C 0.101 3.899 6 C -0.527 4.527 7 H 0.092 0.908 8 C -0.174 4.174 9 N -0.421 5.421 10 Si 0.794 3.206 11 H -0.195 1.195 12 H -0.194 1.194 13 H -0.182 1.182 14 C -0.273 4.273 15 C 0.038 3.962 16 O -0.242 6.242 17 C -0.018 4.018 18 C -0.119 4.119 19 O -0.218 6.218 20 C -0.029 4.029 21 C -0.125 4.125 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.146 0.854 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.564 -0.605 -2.099 5.059 hybrid contribution 1.035 0.239 0.134 1.071 sum -3.528 -0.366 -1.964 4.055 Atomic orbital electron populations 1.20307 0.90082 1.01736 1.01001 1.17900 0.96115 0.87721 1.16636 1.20388 0.93192 0.95072 1.06344 1.19628 0.91226 0.85350 1.06710 1.16407 0.93787 0.87482 0.92212 1.19454 0.91442 1.10243 1.31599 0.90847 1.26474 1.04405 0.93871 0.92618 1.69796 1.40157 1.16150 1.16020 0.85351 0.77176 0.79363 0.78704 1.19482 1.19375 1.18215 1.20598 0.93067 0.94993 1.18606 1.19090 0.91733 0.84944 1.00406 1.86635 1.40086 1.14125 1.83305 1.23933 0.84007 0.93291 1.00612 1.21384 0.98288 0.90540 1.01703 1.86726 1.39130 1.13905 1.82029 1.23797 0.85396 0.94191 0.99540 1.21648 0.98204 0.89444 1.03198 0.92751 0.91324 0.92707 0.90600 0.90193 0.85388 0.90358 0.91323 0.92787 0.86645 0.88733 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.65 9.85 71.24 0.70 -1.95 16 2 C -0.18 -8.29 5.91 -19.57 -0.12 -8.41 16 3 C -0.15 -6.95 6.05 -19.56 -0.12 -7.06 16 4 C 0.02 0.88 6.01 23.25 0.14 1.02 16 5 C 0.10 5.83 5.46 -21.21 -0.12 5.71 16 6 C -0.50 -27.79 8.79 23.39 0.21 -27.58 16 7 H 0.07 3.96 7.92 -2.91 -0.02 3.93 16 8 C 0.04 2.31 4.79 85.24 0.41 2.72 16 9 N -0.80 -43.26 10.93 21.82 0.24 -43.02 16 10 Si 0.97 40.42 29.60 68.60 2.03 42.45 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 13 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 14 C -0.27 -13.70 6.12 -19.13 -0.12 -13.82 16 15 C 0.08 3.93 6.72 22.65 0.15 4.09 16 16 O -0.33 -13.63 10.97 -96.40 -1.06 -14.69 16 17 C 0.06 1.86 8.02 72.57 0.58 2.44 16 18 C -0.08 -3.31 6.89 30.74 0.21 -3.10 16 19 O -0.30 -15.51 8.70 -91.86 -0.80 -16.31 16 20 C 0.05 1.78 8.01 72.56 0.58 2.36 16 21 C -0.09 -3.16 6.58 30.77 0.20 -2.96 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 2.11 7.73 -2.38 -0.02 2.09 16 24 H 0.05 1.87 7.99 -2.39 -0.02 1.85 16 25 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 28 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -66.61 275.94 4.25 -62.37 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.12 Total: 15.75 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 2.72 Total: -46.55 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.24 Total: -43.02 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.86 Total: -31.00 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -66.61 4.25 -62.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258051043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.891 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds