Wall clock time and date at job start Mon Mar 30 2020 04:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48501 * 109.46925 * 269.99727 * 3 2 1 5 5 H 1.48494 * 109.47225 * 29.99657 * 3 2 1 6 6 H 1.48503 * 109.47122 * 150.00076 * 3 2 1 7 7 C 1.37872 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00060 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.39536 * 123.87857 * 269.95768 * 10 9 7 12 12 C 1.39363 * 130.82275 * 0.02562 * 11 10 9 13 13 C 1.37946 * 120.13096 * 179.74928 * 12 11 10 14 14 C 1.38313 * 120.36968 * 0.51442 * 13 12 11 15 15 C 1.50697 * 120.08224 * 179.76647 * 14 13 12 16 16 N 1.46905 * 109.47110 * 269.72221 * 15 14 13 17 17 C 1.38393 * 119.82473 * 359.48939 * 14 13 12 18 18 C 1.37678 * 119.91920 * 0.25489 * 17 14 13 19 19 C 1.51137 * 132.85196 * 180.02562 * 18 17 14 20 20 C 1.34368 * 123.87543 * 89.97749 * 10 9 7 21 21 O 1.21283 * 126.44615 * 0.02562 * 20 10 9 22 22 H 0.97005 * 120.00053 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46654 * 60.00548 * 9 7 2 24 24 H 1.08991 * 109.47404 * 300.00264 * 9 7 2 25 25 H 1.07992 * 119.93492 * 0.03088 * 12 11 10 26 26 H 1.07995 * 119.81764 * 180.28213 * 13 12 11 27 27 H 1.09002 * 109.47000 * 149.72217 * 15 14 13 28 28 H 1.08995 * 109.47308 * 29.72358 * 15 14 13 29 29 H 1.00901 * 110.99869 * 180.02562 * 16 15 14 30 30 H 1.00896 * 110.99543 * 303.95619 * 16 15 14 31 31 H 1.08004 * 120.03522 * 180.23227 * 17 14 13 32 32 H 1.09002 * 110.50579 * 298.63755 * 19 18 17 33 33 H 1.09001 * 110.50904 * 61.35053 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0017 10 7 2.2029 -3.6126 0.0015 11 6 2.7068 -4.2049 -1.1571 12 6 2.4664 -3.9264 -2.5013 13 6 3.0981 -4.6598 -3.4842 14 6 3.9653 -5.6826 -3.1451 15 6 4.6478 -6.4831 -4.2242 16 7 3.8168 -7.6431 -4.5731 17 6 4.2089 -5.9650 -1.8124 18 6 3.5838 -5.2311 -0.8295 19 6 3.6320 -5.2836 0.6802 20 6 2.6908 -4.1811 1.1169 21 8 2.4263 -3.8702 2.2590 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8881 24 1 0.6246 -2.5563 0.8918 25 1 1.7878 -3.1318 -2.7740 26 1 2.9116 -4.4366 -4.5242 27 1 5.6176 -6.8261 -3.8637 28 1 4.7883 -5.8583 -5.1062 29 1 4.2534 -8.1966 -5.2950 30 1 3.6184 -8.2039 -3.7581 31 1 4.8884 -6.7604 -1.5438 32 1 3.2806 -6.2506 1.0400 33 1 4.6429 -5.0865 1.0371 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258821281.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:03 Heat of formation + Delta-G solvation = -5.189176 kcal Electronic energy + Delta-G solvation = -17234.410674 eV Core-core repulsion = 14452.672691 eV Total energy + Delta-G solvation = -2781.737983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89019 -38.16897 -35.91891 -34.06985 -33.17241 -31.95003 -29.70114 -27.94994 -26.92197 -24.53601 -23.11507 -21.58608 -20.64968 -19.46824 -16.80702 -16.48540 -16.45354 -15.77995 -15.27788 -14.85927 -14.72247 -14.41181 -13.88662 -13.66682 -13.00227 -12.76011 -12.73460 -12.50714 -12.33903 -11.88766 -11.47663 -11.35799 -11.04814 -10.77756 -10.58501 -10.30657 -10.15570 -9.32852 -9.23882 -8.82712 -8.56688 -8.54055 -7.25022 -6.17251 -4.24374 1.52047 1.65700 3.09691 3.24998 3.31369 3.36146 3.68614 4.10859 4.36094 4.49467 4.71769 4.79784 4.97046 5.14263 5.17245 5.24677 5.50849 5.59310 5.61271 5.67619 5.90512 6.09970 6.20426 6.54570 6.60656 6.74323 6.85789 6.98363 7.14034 7.16696 7.29751 7.39978 7.77381 7.98251 8.01577 8.61947 8.82618 9.41809 10.90471 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025364 B = 0.006423 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.653438 B = 4358.457312 C = 5025.772144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.238 3.762 10 N -0.532 5.532 11 C 0.178 3.822 12 C -0.135 4.135 13 C -0.063 4.063 14 C -0.131 4.131 15 C 0.112 3.888 16 N -0.847 5.847 17 C -0.063 4.063 18 C -0.163 4.163 19 C -0.113 4.113 20 C 0.519 3.481 21 O -0.508 6.508 22 H 0.266 0.734 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.131 0.869 26 H 0.124 0.876 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.338 0.662 30 H 0.341 0.659 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 -13.302 -7.909 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.120 3.880 10 N -0.251 5.251 11 C 0.079 3.921 12 C -0.156 4.156 13 C -0.083 4.083 14 C -0.133 4.133 15 C -0.018 4.018 16 N -0.377 5.377 17 C -0.082 4.082 18 C -0.166 4.166 19 C -0.153 4.153 20 C 0.307 3.693 21 O -0.383 6.383 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.149 0.851 26 H 0.142 0.858 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.644 -12.336 -7.393 16.287 hybrid contribution 1.151 0.546 0.313 1.312 sum 8.795 -11.789 -7.080 16.324 Atomic orbital electron populations 1.69929 1.06034 1.27429 1.49583 1.24926 0.94930 0.99384 0.94568 0.86414 0.79826 0.82550 0.78231 1.20377 1.20900 1.19764 1.21335 0.93489 0.90194 1.52347 0.92146 1.19546 0.87208 0.81895 0.99322 1.46470 1.42022 1.32621 1.03958 1.18338 0.93280 0.92004 0.88496 1.20510 1.03328 1.02276 0.89504 1.20655 0.94828 0.94117 0.98655 1.19412 1.01648 0.99151 0.93090 1.20545 0.92756 0.91956 0.96540 1.58738 1.51180 1.12687 1.15074 1.19910 0.98808 0.98462 0.90993 1.19792 1.02197 0.99891 0.94715 1.21041 1.01630 1.00108 0.92506 1.20443 0.81185 0.83022 0.84657 1.90719 1.61757 1.66678 1.19177 0.92413 0.93947 0.93350 0.85097 0.85780 0.95103 0.90453 0.84964 0.84603 0.86544 0.86978 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.54 -15.17 9.39 -34.44 -0.32 -15.49 16 8 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.24 6.27 5.49 -5.19 -0.03 6.24 16 10 N -0.53 -12.02 2.72 -114.54 -0.31 -12.33 16 11 C 0.18 3.42 6.69 -83.69 -0.56 2.86 16 12 C -0.14 -2.38 9.74 -39.27 -0.38 -2.76 16 13 C -0.06 -0.91 9.68 -39.66 -0.38 -1.30 16 14 C -0.13 -1.68 5.40 -104.54 -0.56 -2.24 16 15 C 0.11 1.09 6.92 -4.97 -0.03 1.06 16 16 N -0.85 -7.60 9.61 -11.41 -0.11 -7.71 16 17 C -0.06 -0.82 9.70 -39.73 -0.39 -1.20 16 18 C -0.16 -2.59 6.35 -104.37 -0.66 -3.26 16 19 C -0.11 -1.77 6.88 -28.48 -0.20 -1.96 16 20 C 0.52 11.21 8.23 -10.83 -0.09 11.12 16 21 O -0.51 -12.72 17.67 5.55 0.10 -12.62 16 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.04 1.12 7.61 -51.93 -0.40 0.72 16 24 H 0.05 1.39 7.95 -51.93 -0.41 0.98 16 25 H 0.13 2.41 7.70 -52.49 -0.40 2.00 16 26 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.03 0.26 8.09 -51.93 -0.42 -0.16 16 28 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.34 2.25 9.08 -39.29 -0.36 1.89 16 30 H 0.34 2.87 8.98 -39.29 -0.35 2.52 16 31 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 290.08 15.07 4.37 4.37 Total: -1.00 -32.14 290.08 -7.94 -40.08 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.00 Total: 2.02 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -3.71 Total: -5.19 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.32 Total: -45.32 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.10 Total: -12.62 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.14 -7.94 -40.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258821281.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.891 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds