Wall clock time and date at job start Mon Mar 30 2020 04:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48501 * 109.46925 * 269.99727 * 3 2 1 5 5 H 1.48494 * 109.47225 * 29.99657 * 3 2 1 6 6 H 1.48503 * 109.47122 * 150.00076 * 3 2 1 7 7 C 1.37872 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00060 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.39536 * 123.87857 * 269.95768 * 10 9 7 12 12 C 1.39363 * 130.82275 * 0.02562 * 11 10 9 13 13 C 1.37946 * 120.13096 * 179.74928 * 12 11 10 14 14 C 1.38313 * 120.36968 * 0.51442 * 13 12 11 15 15 C 1.50697 * 120.08224 * 179.76647 * 14 13 12 16 16 N 1.46905 * 109.47110 * 269.72221 * 15 14 13 17 17 C 1.38393 * 119.82473 * 359.48939 * 14 13 12 18 18 C 1.37678 * 119.91920 * 0.25489 * 17 14 13 19 19 C 1.51137 * 132.85196 * 180.02562 * 18 17 14 20 20 C 1.34368 * 123.87543 * 89.97749 * 10 9 7 21 21 O 1.21283 * 126.44615 * 0.02562 * 20 10 9 22 22 H 0.97005 * 120.00053 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46654 * 60.00548 * 9 7 2 24 24 H 1.08991 * 109.47404 * 300.00264 * 9 7 2 25 25 H 1.07992 * 119.93492 * 0.03088 * 12 11 10 26 26 H 1.07995 * 119.81764 * 180.28213 * 13 12 11 27 27 H 1.09002 * 109.47000 * 149.72217 * 15 14 13 28 28 H 1.08995 * 109.47308 * 29.72358 * 15 14 13 29 29 H 1.00901 * 110.99869 * 180.02562 * 16 15 14 30 30 H 1.00896 * 110.99543 * 303.95619 * 16 15 14 31 31 H 1.08004 * 120.03522 * 180.23227 * 17 14 13 32 32 H 1.09002 * 110.50579 * 298.63755 * 19 18 17 33 33 H 1.09001 * 110.50904 * 61.35053 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0017 10 7 2.2029 -3.6126 0.0015 11 6 2.7068 -4.2049 -1.1571 12 6 2.4664 -3.9264 -2.5013 13 6 3.0981 -4.6598 -3.4842 14 6 3.9653 -5.6826 -3.1451 15 6 4.6478 -6.4831 -4.2242 16 7 3.8168 -7.6431 -4.5731 17 6 4.2089 -5.9650 -1.8124 18 6 3.5838 -5.2311 -0.8295 19 6 3.6320 -5.2836 0.6802 20 6 2.6908 -4.1811 1.1169 21 8 2.4263 -3.8702 2.2590 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8881 24 1 0.6246 -2.5563 0.8918 25 1 1.7878 -3.1318 -2.7740 26 1 2.9116 -4.4366 -4.5242 27 1 5.6176 -6.8261 -3.8637 28 1 4.7883 -5.8583 -5.1062 29 1 4.2534 -8.1966 -5.2950 30 1 3.6184 -8.2039 -3.7581 31 1 4.8884 -6.7604 -1.5438 32 1 3.2806 -6.2506 1.0400 33 1 4.6429 -5.0865 1.0371 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258821281.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:02 Heat of formation + Delta-G solvation = -27.925281 kcal Electronic energy + Delta-G solvation = -17235.396585 eV Core-core repulsion = 14452.672691 eV Total energy + Delta-G solvation = -2782.723894 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.35279 -39.55543 -37.38368 -35.62740 -34.62705 -33.55040 -31.02628 -29.36993 -28.61121 -25.73073 -24.94362 -22.88442 -21.84601 -21.02973 -18.89526 -18.02993 -17.80676 -16.94523 -16.84712 -16.47825 -15.86956 -15.56653 -15.21997 -14.92400 -14.61332 -14.48355 -13.96699 -13.93217 -13.57196 -13.39374 -13.31025 -12.91176 -12.70562 -12.46700 -12.19852 -12.01690 -11.78279 -11.03371 -10.99247 -10.74762 -9.74177 -9.47617 -8.76176 -8.32062 -6.52420 0.24238 0.46300 1.32064 1.34944 1.45398 1.57316 2.07177 2.32790 2.85980 2.94638 3.23185 3.46628 3.91799 4.02817 4.08442 4.21311 4.32501 4.52614 4.55730 4.67135 4.77262 4.82338 4.90955 4.95836 5.04165 5.27235 5.39296 5.51274 5.69116 5.78542 5.84036 5.98728 6.34076 6.38159 6.53383 6.74819 6.98506 7.20743 8.72702 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025364 B = 0.006423 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.653438 B = 4358.457312 C = 5025.772144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.554 4.554 8 H 0.051 0.949 9 C 0.254 3.746 10 N -0.546 5.546 11 C 0.126 3.874 12 C -0.153 4.153 13 C -0.065 4.065 14 C -0.112 4.112 15 C 0.114 3.886 16 N -0.858 5.858 17 C -0.051 4.051 18 C -0.151 4.151 19 C -0.093 4.093 20 C 0.497 3.503 21 O -0.562 6.562 22 H 0.272 0.728 23 H 0.028 0.972 24 H 0.008 0.992 25 H 0.105 0.895 26 H 0.143 0.857 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.353 0.647 30 H 0.346 0.654 31 H 0.162 0.838 32 H 0.148 0.852 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.471 -15.095 -9.617 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.592 4.592 8 H 0.069 0.931 9 C 0.134 3.866 10 N -0.265 5.265 11 C 0.029 3.971 12 C -0.174 4.174 13 C -0.084 4.084 14 C -0.114 4.114 15 C -0.015 4.015 16 N -0.390 5.390 17 C -0.069 4.069 18 C -0.154 4.154 19 C -0.131 4.131 20 C 0.289 3.711 21 O -0.442 6.442 22 H 0.081 0.919 23 H 0.046 0.954 24 H 0.026 0.974 25 H 0.123 0.877 26 H 0.161 0.839 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.168 0.832 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.165 0.835 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.532 -14.178 -9.167 19.899 hybrid contribution 0.258 0.995 0.699 1.243 sum 10.790 -13.183 -8.468 19.024 Atomic orbital electron populations 1.70038 1.07563 1.28702 1.49854 1.25870 0.95875 1.03139 0.93692 0.85329 0.78241 0.77762 0.79011 1.18671 1.19912 1.19736 1.21525 0.93104 0.91534 1.53029 0.93113 1.18960 0.87678 0.83408 0.96539 1.46405 1.41916 1.32116 1.06095 1.18667 0.96131 0.94374 0.87902 1.20542 1.04065 1.02743 0.90018 1.20900 0.94628 0.94129 0.98735 1.19884 0.99524 0.97730 0.94262 1.20564 0.93329 0.91987 0.95668 1.58668 1.51481 1.12953 1.15856 1.20348 0.98143 0.98347 0.90095 1.19993 1.01226 0.98851 0.95371 1.21016 1.01122 0.98794 0.92165 1.21582 0.81662 0.84147 0.83719 1.90664 1.63888 1.68690 1.20960 0.91912 0.95364 0.97399 0.87704 0.83918 0.92641 0.89826 0.83225 0.84085 0.82081 0.83452 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.29 21.45 0.28 -55.72 16 2 C 0.01 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.55 -33.10 9.39 25.60 0.24 -32.86 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.25 14.49 5.49 85.63 0.47 14.96 16 10 N -0.55 -26.06 2.72 -634.90 -1.72 -27.78 16 11 C 0.13 4.92 6.69 38.35 0.26 5.17 16 12 C -0.15 -5.52 9.74 22.47 0.22 -5.30 16 13 C -0.06 -1.76 9.68 22.22 0.21 -1.54 16 14 C -0.11 -2.43 5.40 -19.81 -0.11 -2.54 16 15 C 0.11 1.66 6.92 85.56 0.59 2.25 16 16 N -0.86 -11.58 9.61 -190.00 -1.83 -13.41 16 17 C -0.05 -1.09 9.70 22.17 0.22 -0.87 16 18 C -0.15 -4.47 6.35 -19.70 -0.13 -4.60 16 19 C -0.09 -2.68 6.88 29.46 0.20 -2.48 16 20 C 0.50 22.26 8.23 87.94 0.72 22.98 16 21 O -0.56 -29.74 17.67 -3.04 -0.05 -29.79 16 22 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 23 H 0.03 1.64 7.61 -2.39 -0.02 1.62 16 24 H 0.01 0.50 7.95 -2.39 -0.02 0.48 16 25 H 0.10 4.20 7.70 -2.91 -0.02 4.18 16 26 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 27 H 0.06 0.59 8.09 -2.39 -0.02 0.57 16 28 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 29 H 0.35 3.16 9.08 -89.69 -0.81 2.34 16 30 H 0.35 4.23 8.98 -89.70 -0.81 3.42 16 31 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.14 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -75.40 290.08 1.59 -73.81 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -0.48 Total: 9.05 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 3.36 Total: -3.51 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -3.27 Total: -96.90 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.05 Total: -29.79 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -75.40 1.59 -73.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258821281.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.884 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds