Wall clock time and date at job start Mon Mar 30 2020 04:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47250 * 269.99923 * 3 2 1 5 5 H 1.48503 * 109.47264 * 29.99949 * 3 2 1 6 6 H 1.48500 * 109.47117 * 149.99944 * 3 2 1 7 7 C 1.37872 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00240 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00043 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.47051 * 125.40719 * 269.96889 * 10 9 7 12 12 C 1.54108 * 103.86050 * 180.02562 * 11 10 9 13 13 H 1.08993 * 110.67184 * 241.34743 * 12 11 10 14 14 C 1.50706 * 110.54564 * 118.59911 * 12 11 10 15 15 C 1.38234 * 120.00196 * 104.10702 * 14 12 11 16 16 C 1.38235 * 119.99814 * 179.97438 * 15 14 12 17 17 C 1.38230 * 120.00326 * 359.97438 * 16 15 14 18 18 C 1.38235 * 119.99899 * 359.95697 * 17 16 15 19 19 C 1.38234 * 120.00205 * 0.02562 * 18 17 16 20 20 N 1.47054 * 103.86111 * 0.02562 * 12 11 10 21 21 C 1.33941 * 109.18249 * 359.97438 * 20 12 11 22 22 O 1.21588 * 123.04463 * 180.02562 * 21 20 12 23 23 H 0.97002 * 120.00170 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46831 * 59.99346 * 9 7 2 25 25 H 1.09004 * 109.46581 * 299.99946 * 9 7 2 26 26 H 1.08999 * 110.55095 * 61.41305 * 11 10 9 27 27 H 1.08997 * 110.55370 * 298.59453 * 11 10 9 28 28 H 1.08000 * 119.99516 * 0.24808 * 15 14 12 29 29 H 1.08000 * 119.99297 * 179.97438 * 16 15 14 30 30 H 1.08001 * 120.00371 * 179.97438 * 17 16 15 31 31 H 1.07999 * 120.00043 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.00455 * 179.97438 * 19 18 17 33 33 H 0.97007 * 125.40617 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.2839 -3.3786 1.1984 12 6 4.7623 -4.7298 0.6323 13 1 4.0979 -5.5351 0.9456 14 6 6.1771 -5.0141 1.0665 15 6 6.4210 -5.9355 2.0677 16 6 7.7189 -6.1966 2.4655 17 6 8.7729 -5.5367 1.8619 18 6 8.5291 -4.6164 0.8597 19 6 7.2313 -4.3555 0.4616 20 7 4.6974 -4.5440 -0.8250 21 6 4.2593 -3.3067 -1.0919 22 8 4.1104 -2.8856 -2.2227 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8752 -0.6797 -0.8895 26 1 3.3803 -3.5111 1.7933 27 1 5.0701 -2.9137 1.7932 28 1 5.5978 -6.4546 2.5359 29 1 7.9093 -6.9162 3.2480 30 1 9.7868 -5.7404 2.1730 31 1 9.3525 -4.1005 0.3883 32 1 7.0408 -3.6361 -0.3211 33 1 4.9343 -5.2116 -1.4878 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259404079.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:38 Heat of formation + Delta-G solvation = 15.953978 kcal Electronic energy + Delta-G solvation = -17316.879801 eV Core-core repulsion = 14536.058654 eV Total energy + Delta-G solvation = -2780.821147 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75624 -38.89271 -35.75073 -34.14882 -32.24203 -31.35259 -30.90362 -28.57621 -27.11287 -23.53810 -22.70843 -22.56593 -20.96444 -19.45676 -17.35531 -17.09851 -16.73875 -15.84053 -15.52489 -14.74604 -14.71413 -14.14200 -13.67524 -13.53309 -13.43403 -13.14944 -12.94137 -12.43137 -12.32633 -12.08358 -11.62355 -11.22681 -11.14066 -10.91032 -10.56660 -10.15737 -9.56063 -9.41976 -9.03291 -8.99611 -8.71639 -8.59550 -7.66855 -6.09077 -4.08368 1.18362 1.29827 3.24821 3.30874 3.35999 3.38082 3.69449 3.84817 4.37283 4.39482 4.66765 4.78285 4.83735 4.89989 5.02975 5.21057 5.23798 5.39284 5.52084 5.71749 5.83537 5.93510 6.00640 6.13507 6.33600 6.40235 6.52076 6.77414 6.87546 7.02101 7.49212 7.57599 7.61020 8.30668 8.48247 8.94769 9.31062 9.51724 11.04343 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035310 B = 0.005511 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.777331 B = 5079.076901 C = 5182.835886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.248 3.752 10 N -0.608 5.608 11 C 0.104 3.896 12 C 0.163 3.837 13 H 0.095 0.905 14 C -0.095 4.095 15 C -0.107 4.107 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.095 4.095 20 N -0.744 5.744 21 C 0.695 3.305 22 O -0.588 6.588 23 H 0.265 0.735 24 H 0.033 0.967 25 H 0.037 0.963 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.095 -11.901 6.856 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.128 3.872 10 N -0.345 5.345 11 C -0.020 4.020 12 C 0.057 3.943 13 H 0.113 0.887 14 C -0.097 4.097 15 C -0.125 4.125 16 C -0.141 4.141 17 C -0.139 4.139 18 C -0.140 4.140 19 C -0.114 4.114 20 N -0.406 5.406 21 C 0.396 3.604 22 O -0.466 6.466 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 15.759 -11.328 6.290 20.402 hybrid contribution 0.422 0.502 -0.129 0.668 sum 16.181 -10.826 6.161 20.420 Atomic orbital electron populations 1.69900 1.06197 1.27026 1.50343 1.24846 0.94789 0.98922 0.94415 0.86860 0.80181 0.83765 0.78944 1.19821 1.20972 1.18999 1.21393 0.89303 0.94974 1.51532 0.90614 1.19460 0.95367 0.74944 0.97380 1.47321 1.68056 1.15097 1.04006 1.22285 1.01033 0.88567 0.90135 1.20720 0.92687 0.98810 0.82116 0.88724 1.20158 0.95111 0.97259 0.97155 1.21021 0.97097 0.97499 0.96933 1.21102 0.92694 1.00168 1.00181 1.21160 0.99004 0.96963 0.96791 1.21163 0.96770 0.98389 0.97648 1.21058 0.92134 0.98825 0.99336 1.45235 1.73435 1.15383 1.06540 1.15937 0.78253 0.80972 0.85267 1.90912 1.60555 1.73802 1.21300 0.92508 0.94864 0.94543 0.89664 0.90716 0.85703 0.86080 0.86291 0.86149 0.85971 0.73797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.53 -15.46 9.94 -34.44 -0.34 -15.81 16 8 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 9 C 0.25 6.15 4.82 -5.19 -0.03 6.12 16 10 N -0.61 -13.03 2.94 -180.19 -0.53 -13.56 16 11 C 0.10 1.66 7.30 -3.16 -0.02 1.64 16 12 C 0.16 2.14 3.96 -68.20 -0.27 1.87 16 13 H 0.09 1.05 8.04 -51.93 -0.42 0.63 16 14 C -0.10 -1.10 4.83 -104.62 -0.51 -1.61 16 15 C -0.11 -1.03 9.68 -39.58 -0.38 -1.42 16 16 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 17 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 18 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 19 C -0.10 -1.16 9.33 -39.58 -0.37 -1.53 16 20 N -0.74 -11.77 5.28 -59.33 -0.31 -12.09 16 21 C 0.70 15.05 8.60 -88.40 -0.76 14.29 16 22 O -0.59 -15.45 17.53 5.29 0.09 -15.35 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 25 H 0.04 0.95 7.34 -51.93 -0.38 0.57 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.07 1.08 7.72 -51.93 -0.40 0.68 16 28 H 0.13 0.95 8.05 -52.49 -0.42 0.53 16 29 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.69 7.71 -52.49 -0.40 1.29 16 33 H 0.42 5.74 8.96 -40.82 -0.37 5.37 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -34.91 285.71 -8.36 -43.27 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.05 Total: 2.67 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.97 Total: 0.91 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.07 Total: -52.56 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.09 Total: -15.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.91 -8.36 -43.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259404079.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.220 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds