Wall clock time and date at job start Mon Mar 30 2020 04:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47250 * 269.99923 * 3 2 1 5 5 H 1.48503 * 109.47264 * 29.99949 * 3 2 1 6 6 H 1.48500 * 109.47117 * 149.99944 * 3 2 1 7 7 C 1.37872 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00240 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00043 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.47051 * 125.40719 * 269.96889 * 10 9 7 12 12 C 1.54108 * 103.86050 * 180.02562 * 11 10 9 13 13 H 1.08993 * 110.67184 * 241.34743 * 12 11 10 14 14 C 1.50706 * 110.54564 * 118.59911 * 12 11 10 15 15 C 1.38234 * 120.00196 * 104.10702 * 14 12 11 16 16 C 1.38235 * 119.99814 * 179.97438 * 15 14 12 17 17 C 1.38230 * 120.00326 * 359.97438 * 16 15 14 18 18 C 1.38235 * 119.99899 * 359.95697 * 17 16 15 19 19 C 1.38234 * 120.00205 * 0.02562 * 18 17 16 20 20 N 1.47054 * 103.86111 * 0.02562 * 12 11 10 21 21 C 1.33941 * 109.18249 * 359.97438 * 20 12 11 22 22 O 1.21588 * 123.04463 * 180.02562 * 21 20 12 23 23 H 0.97002 * 120.00170 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46831 * 59.99346 * 9 7 2 25 25 H 1.09004 * 109.46581 * 299.99946 * 9 7 2 26 26 H 1.08999 * 110.55095 * 61.41305 * 11 10 9 27 27 H 1.08997 * 110.55370 * 298.59453 * 11 10 9 28 28 H 1.08000 * 119.99516 * 0.24808 * 15 14 12 29 29 H 1.08000 * 119.99297 * 179.97438 * 16 15 14 30 30 H 1.08001 * 120.00371 * 179.97438 * 17 16 15 31 31 H 1.07999 * 120.00043 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.00455 * 179.97438 * 19 18 17 33 33 H 0.97007 * 125.40617 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.2839 -3.3786 1.1984 12 6 4.7623 -4.7298 0.6323 13 1 4.0979 -5.5351 0.9456 14 6 6.1771 -5.0141 1.0665 15 6 6.4210 -5.9355 2.0677 16 6 7.7189 -6.1966 2.4655 17 6 8.7729 -5.5367 1.8619 18 6 8.5291 -4.6164 0.8597 19 6 7.2313 -4.3555 0.4616 20 7 4.6974 -4.5440 -0.8250 21 6 4.2593 -3.3067 -1.0919 22 8 4.1104 -2.8856 -2.2227 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8752 -0.6797 -0.8895 26 1 3.3803 -3.5111 1.7933 27 1 5.0701 -2.9137 1.7932 28 1 5.5978 -6.4546 2.5359 29 1 7.9093 -6.9162 3.2480 30 1 9.7868 -5.7404 2.1730 31 1 9.3525 -4.1005 0.3883 32 1 7.0408 -3.6361 -0.3211 33 1 4.9343 -5.2116 -1.4878 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259404079.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:38 Heat of formation + Delta-G solvation = -8.488497 kcal Electronic energy + Delta-G solvation = -17317.939706 eV Core-core repulsion = 14536.058654 eV Total energy + Delta-G solvation = -2781.881052 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.15522 -39.85484 -37.36317 -35.92628 -34.25055 -32.37278 -31.69382 -30.36320 -28.53642 -25.01380 -24.31016 -23.40199 -21.92885 -21.16065 -19.18300 -18.64221 -17.95002 -17.19165 -16.81606 -16.27933 -15.87040 -15.64606 -15.25538 -14.86680 -14.50974 -14.45375 -14.21785 -13.89000 -13.67936 -13.63311 -13.12164 -12.74961 -12.49096 -12.14983 -11.95327 -11.88620 -11.74574 -11.24732 -10.83389 -10.38979 -9.78097 -9.64626 -9.34462 -8.34214 -6.40655 0.38764 0.54131 1.34473 1.39014 1.47240 1.81615 2.19863 2.31617 2.86137 2.99086 3.08042 3.62784 3.67717 3.94977 4.19705 4.24715 4.30845 4.39047 4.62856 4.68523 4.70463 4.78737 4.87791 5.08280 5.19634 5.23768 5.41797 5.59807 5.66389 5.68668 5.75615 6.13590 6.16722 6.32490 6.60745 6.71307 7.21597 7.67939 8.82870 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035310 B = 0.005511 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.777331 B = 5079.076901 C = 5182.835886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.544 4.544 8 H 0.028 0.972 9 C 0.257 3.743 10 N -0.621 5.621 11 C 0.098 3.902 12 C 0.172 3.828 13 H 0.124 0.876 14 C -0.106 4.106 15 C -0.103 4.103 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.131 4.131 19 C -0.115 4.115 20 N -0.725 5.725 21 C 0.686 3.314 22 O -0.646 6.646 23 H 0.270 0.730 24 H 0.059 0.941 25 H 0.021 0.979 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.518 -12.742 9.003 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.158 1.158 7 C -0.583 4.583 8 H 0.046 0.954 9 C 0.135 3.865 10 N -0.357 5.357 11 C -0.025 4.025 12 C 0.067 3.933 13 H 0.142 0.858 14 C -0.107 4.107 15 C -0.122 4.122 16 C -0.140 4.140 17 C -0.136 4.136 18 C -0.149 4.149 19 C -0.134 4.134 20 N -0.386 5.386 21 C 0.386 3.614 22 O -0.528 6.528 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 18.219 -12.246 8.491 23.537 hybrid contribution -0.325 0.619 -0.759 1.032 sum 17.894 -11.627 7.732 22.697 Atomic orbital electron populations 1.70051 1.08270 1.28482 1.51569 1.25852 0.95705 1.03356 0.93610 0.85704 0.79946 0.78109 0.79134 1.20061 1.19788 1.15846 1.21594 0.91587 0.93400 1.51695 0.95356 1.19150 0.92507 0.77283 0.97531 1.47254 1.67716 1.14637 1.06043 1.22614 1.01830 0.89439 0.88568 1.20903 0.94713 0.98006 0.79706 0.85800 1.19956 0.93473 0.98721 0.98535 1.21287 0.98463 0.96520 0.95886 1.21491 0.92108 1.00066 1.00296 1.21512 1.00572 0.95835 0.95730 1.21337 0.96269 0.99035 0.98287 1.20971 0.93470 0.99291 0.99628 1.45057 1.71670 1.13381 1.08507 1.16234 0.78246 0.82410 0.84461 1.90851 1.63051 1.75412 1.23517 0.92125 0.92365 0.96145 0.89489 0.88883 0.83322 0.83201 0.83800 0.85223 0.88605 0.72491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.91 13.96 21.45 0.30 -59.61 16 2 C 0.01 0.77 5.47 84.65 0.46 1.24 16 3 Si 0.95 44.17 27.47 68.60 1.88 46.05 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 7 C -0.54 -32.54 9.94 25.60 0.25 -32.28 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C 0.26 12.81 4.82 85.64 0.41 13.23 16 10 N -0.62 -26.89 2.94 -842.73 -2.48 -29.37 16 11 C 0.10 3.03 7.30 86.65 0.63 3.66 16 12 C 0.17 4.21 3.96 44.52 0.18 4.39 16 13 H 0.12 2.36 8.04 -2.39 -0.02 2.34 16 14 C -0.11 -2.20 4.83 -19.86 -0.10 -2.29 16 15 C -0.10 -1.60 9.68 22.27 0.22 -1.38 16 16 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 17 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 18 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 19 C -0.12 -2.68 9.33 22.27 0.21 -2.47 16 20 N -0.72 -22.78 5.28 -460.34 -2.43 -25.21 16 21 C 0.69 30.46 8.60 179.57 1.55 32.00 16 22 O -0.65 -35.41 17.53 -3.99 -0.07 -35.48 16 23 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 24 H 0.06 2.61 7.20 -2.39 -0.02 2.59 16 25 H 0.02 1.09 7.34 -2.38 -0.02 1.07 16 26 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.09 2.52 7.72 -2.39 -0.02 2.50 16 28 H 0.15 1.57 8.05 -2.91 -0.02 1.54 16 29 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 30 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 32 H 0.10 2.70 7.71 -2.91 -0.02 2.68 16 33 H 0.43 11.64 8.96 -92.70 -0.83 10.81 16 Total: -1.00 -79.65 285.71 1.92 -77.73 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.23 Total: 14.98 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.48 Total: 10.89 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.61 Total: -114.18 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.07 Total: -35.48 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -79.65 1.92 -77.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259404079.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.242 kcal (2) G-P(sol) polarization free energy of solvation -79.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds