Wall clock time and date at job start Mon Mar 30 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31864 * 118.94991 * 2 1 4 4 C 1.32156 * 120.96656 * 179.97438 * 3 2 1 5 5 C 1.39953 * 118.92261 * 0.25465 * 4 3 2 6 6 C 1.47812 * 120.93674 * 179.74780 * 5 4 3 7 7 N 1.32123 * 126.67183 * 179.70635 * 6 5 4 8 8 C 1.34211 * 105.54399 * 179.89609 * 7 6 5 9 9 C 1.50695 * 126.18838 * 180.12025 * 8 7 6 10 10 C 1.50701 * 109.46975 * 270.28054 * 9 8 7 11 11 H 1.08008 * 120.00011 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00330 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00323 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99669 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47039 * 90.00424 * 14 12 10 16 16 H 1.48503 * 109.47157 * 210.00001 * 14 12 10 17 17 H 1.48497 * 109.47115 * 330.00117 * 14 12 10 18 18 N 1.30040 * 107.62386 * 0.37806 * 8 7 6 19 19 O 1.21284 * 110.48426 * 359.75862 * 18 8 7 20 20 C 1.39943 * 118.11741 * 359.50488 * 5 4 3 21 21 N 1.31858 * 118.95204 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47229 * 90.00175 * 1 2 3 23 23 H 1.08999 * 109.46679 * 210.00164 * 1 2 3 24 24 H 1.09000 * 109.46839 * 329.99648 * 1 2 3 25 25 H 1.08002 * 120.53406 * 179.97438 * 4 3 2 26 26 H 1.08997 * 109.47247 * 30.27698 * 9 8 7 27 27 H 1.08998 * 109.47501 * 150.27998 * 9 8 7 28 28 H 0.97005 * 120.00034 * 179.97438 * 13 12 10 29 29 H 1.07999 * 120.53986 * 180.23833 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1539 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1856 0.0000 -0.0044 6 6 5.6637 0.0001 -0.0096 7 7 6.4528 -1.0596 -0.0091 8 6 7.7047 -0.5758 -0.0174 9 6 8.9730 -1.3895 -0.0228 10 6 9.4002 -1.6633 1.3962 11 1 8.8122 -1.2855 2.2197 12 6 10.5422 -2.3952 1.6434 13 7 10.9153 -2.6338 2.8817 14 14 11.5596 -3.0481 0.2192 15 1 12.5848 -2.0424 -0.1587 16 1 12.2298 -4.3091 0.6267 17 1 10.6729 -3.3118 -0.9425 18 7 7.6252 0.7222 -0.0143 19 8 6.4652 1.0763 -0.0099 20 6 3.4660 -1.2003 0.0010 21 7 2.1453 -1.1538 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 3.9817 2.1494 0.0001 26 1 8.7967 -2.3338 -0.5378 27 1 9.7578 -0.8357 -0.5381 28 1 11.7186 -3.1490 3.0555 29 1 3.9817 -2.1492 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259677163.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:25 Heat of formation + Delta-G solvation = 113.815734 kcal Electronic energy + Delta-G solvation = -16390.992585 eV Core-core repulsion = 13510.874699 eV Total energy + Delta-G solvation = -2880.117886 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.07634 -41.28809 -35.79382 -34.57053 -34.09144 -32.99502 -31.70430 -29.50811 -28.59935 -25.15349 -24.15074 -23.86554 -22.43072 -20.77152 -17.84286 -17.78638 -17.66296 -16.79641 -16.73828 -15.84284 -15.48630 -14.45184 -13.95389 -13.57512 -13.39625 -13.06242 -12.67842 -12.51588 -12.30635 -11.86957 -11.68451 -11.51744 -11.15913 -11.07029 -10.79330 -10.60538 -10.40691 -9.87831 -9.56546 -9.51703 -8.85583 -8.71463 -6.20190 -4.22470 0.07605 0.76799 1.79710 2.80695 2.85666 3.21913 3.29546 3.30462 3.46283 3.59882 3.73905 3.97631 4.20865 4.29661 4.67653 4.86833 4.88926 5.12807 5.21155 5.22679 5.35217 5.56445 5.62998 6.04112 6.16490 6.44688 6.60860 6.71471 6.89478 7.42459 7.72380 8.29467 8.65450 8.79154 9.35744 10.92343 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.047536 B = 0.004515 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.885934 B = 6199.391203 C = 6423.449454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.327 3.673 3 N -0.517 5.517 4 C 0.190 3.810 5 C -0.123 4.123 6 C 0.193 3.807 7 N -0.456 5.456 8 C 0.228 3.772 9 C 0.066 3.934 10 C -0.521 4.521 11 H 0.073 0.927 12 C 0.076 3.924 13 N -0.891 5.891 14 Si 0.879 3.121 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.263 1.263 18 N -0.387 5.387 19 O 0.076 5.924 20 C 0.208 3.792 21 N -0.515 5.515 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.182 0.818 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.268 0.732 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.793 5.363 -7.627 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 N -0.231 5.231 4 C 0.022 3.978 5 C -0.130 4.130 6 C -0.027 4.027 7 N -0.190 5.190 8 C -0.044 4.044 9 C 0.027 3.973 10 C -0.560 4.560 11 H 0.091 0.909 12 C -0.128 4.128 13 N -0.529 5.529 14 Si 0.705 3.295 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.187 1.187 18 N -0.094 5.094 19 O 0.018 5.982 20 C 0.040 3.960 21 N -0.229 5.229 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.199 0.801 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.821 5.357 -7.509 20.067 hybrid contribution 1.612 -0.295 -0.469 1.705 sum -16.210 5.062 -7.978 18.762 Atomic orbital electron populations 1.20634 0.85217 1.04546 1.04166 1.23558 0.98641 0.83525 0.88231 1.68377 1.09177 1.30090 1.15417 1.23506 0.89352 0.97845 0.87121 1.18968 0.86705 0.97634 1.09696 1.25709 0.93982 0.82574 1.00439 1.72100 1.00976 1.27431 1.18495 1.26318 0.95324 0.87429 0.95309 1.18307 0.84865 0.93697 1.00384 1.20659 1.10360 1.35506 0.89435 0.90899 1.24896 0.96833 0.95158 0.95866 1.69874 1.24789 1.39325 1.18888 0.86788 0.80812 0.78998 0.82887 1.19840 1.20775 1.18734 1.74633 0.95587 1.16562 1.22575 1.85356 1.11788 1.34820 1.66270 1.23563 0.88753 0.98178 0.85543 1.68457 1.09204 1.29936 1.15305 0.89229 0.89253 0.89303 0.80129 0.92842 0.93754 0.92228 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.31 36.01 0.37 -0.22 15 2 C 0.33 3.52 7.64 -157.08 -1.20 2.32 15 3 N -0.52 -5.81 10.31 -10.39 -0.11 -5.91 15 4 C 0.19 2.11 11.03 -16.77 -0.19 1.92 15 5 C -0.12 -1.61 5.91 -104.70 -0.62 -2.23 15 6 C 0.19 3.21 8.05 -13.85 -0.11 3.09 15 7 N -0.46 -9.16 11.36 -10.17 -0.12 -9.27 15 8 C 0.23 5.12 7.39 -156.55 -1.16 3.96 15 9 C 0.07 1.61 4.67 -29.04 -0.14 1.48 15 10 C -0.52 -14.86 9.65 -34.44 -0.33 -15.19 15 11 H 0.07 2.30 7.98 -52.48 -0.42 1.89 15 12 C 0.08 2.16 5.47 -17.82 -0.10 2.06 15 13 N -0.89 -26.96 13.96 55.43 0.77 -26.19 15 14 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 15 15 H -0.27 -6.34 7.11 56.52 0.40 -5.93 15 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 17 H -0.26 -5.89 6.54 56.52 0.37 -5.52 15 18 N -0.39 -8.20 12.15 31.19 0.38 -7.83 15 19 O 0.08 1.34 11.23 16.67 0.19 1.53 15 20 C 0.21 2.61 11.00 -16.77 -0.18 2.42 15 21 N -0.52 -6.20 10.31 -10.40 -0.11 -6.31 15 22 H 0.09 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.09 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.09 0.51 8.14 -51.93 -0.42 0.09 15 25 H 0.18 1.54 8.03 -52.49 -0.42 1.12 15 26 H 0.05 1.26 7.20 -51.93 -0.37 0.88 15 27 H 0.04 1.04 7.57 -51.93 -0.39 0.65 15 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 29 H 0.19 2.22 7.97 -52.49 -0.42 1.80 15 LS Contribution 270.15 15.07 4.07 4.07 Total: -1.00 -32.35 270.15 -5.70 -38.05 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -2.46 Total: -3.88 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.65 Total: -0.39 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.82 Total: -55.51 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: 0.19 Total: 1.53 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.35 -5.70 -38.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677163.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.866 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds