Wall clock time and date at job start Mon Mar 30 2020 04:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86799 * 120.00078 * 2 1 4 4 H 1.48506 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47377 * 299.99901 * 3 2 1 6 6 H 1.48494 * 109.47208 * 60.00043 * 3 2 1 7 7 C 1.38887 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99787 * 193.94816 * 7 2 1 9 9 N 1.37161 * 119.99862 * 13.94830 * 7 2 1 10 10 C 1.46381 * 119.33045 * 24.59222 * 9 7 2 11 11 C 1.53245 * 109.15340 * 150.94208 * 10 9 7 12 12 C 1.53215 * 108.57476 * 55.46688 * 11 10 9 13 13 N 1.46380 * 109.16619 * 304.54576 * 12 11 10 14 14 C 1.39911 * 119.33086 * 209.07154 * 13 12 11 15 15 C 1.38880 * 120.07245 * 110.85312 * 14 13 12 16 16 C 1.38105 * 119.92911 * 179.79097 * 15 14 13 17 17 C 1.38282 * 120.07188 * 0.46006 * 16 15 14 18 18 C 1.38284 * 120.14334 * 359.78903 * 17 16 15 19 19 C 1.38116 * 120.06898 * 359.97438 * 18 17 16 20 20 C 1.34140 * 121.34131 * 29.05002 * 13 12 11 21 21 O 1.21585 * 118.69715 * 179.43059 * 20 13 12 22 22 H 0.97006 * 120.00093 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.51971 * 270.83687 * 10 9 7 24 24 H 1.08999 * 109.52700 * 31.03599 * 10 9 7 25 25 H 1.08994 * 109.62357 * 175.20040 * 11 10 9 26 26 H 1.09000 * 109.61921 * 295.75378 * 11 10 9 27 27 H 1.09003 * 109.53133 * 184.63763 * 12 11 10 28 28 H 1.09002 * 109.56334 * 64.47857 * 12 11 10 29 29 H 1.08007 * 120.03221 * 0.02562 * 15 14 13 30 30 H 1.08001 * 119.96569 * 180.22876 * 16 15 14 31 31 H 1.08002 * 119.93265 * 179.76945 * 17 16 15 32 32 H 1.08001 * 119.97050 * 180.02562 * 18 17 16 33 33 H 1.07994 * 120.03443 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.7087 1.3463 -0.0006 5 1 1.8900 2.3965 -1.2126 6 1 1.8899 2.3964 1.2124 7 6 2.0091 -1.2028 -0.0005 8 1 3.0652 -1.2167 0.2249 9 7 1.3535 -2.3730 -0.2874 10 6 0.1316 -2.3316 -1.0923 11 6 -0.0051 -3.6470 -1.8666 12 6 0.0374 -4.8080 -0.8678 13 7 1.2642 -4.7149 -0.0747 14 6 1.8431 -5.8835 0.4321 15 6 3.0555 -6.3351 -0.0728 16 6 3.6263 -7.4866 0.4326 17 6 2.9874 -8.1950 1.4336 18 6 1.7775 -7.7510 1.9349 19 6 1.2038 -6.5974 1.4372 20 6 1.8450 -3.5320 0.1758 21 8 2.8573 -3.5095 0.8489 22 1 -0.4850 0.8401 -0.0004 23 1 -0.7309 -2.2025 -0.4386 24 1 0.1858 -1.4996 -1.7944 25 1 -0.9543 -3.6595 -2.4022 26 1 0.8186 -3.7426 -2.5740 27 1 0.0242 -5.7545 -1.4084 28 1 -0.8282 -4.7534 -0.2076 29 1 3.5533 -5.7842 -0.8572 30 1 4.5710 -7.8363 0.0430 31 1 3.4340 -9.0973 1.8246 32 1 1.2811 -8.3062 2.7170 33 1 0.2587 -6.2514 1.8288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259684833.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:14 Heat of formation + Delta-G solvation = 20.899069 kcal Electronic energy + Delta-G solvation = -17873.508336 eV Core-core repulsion = 15092.901625 eV Total energy + Delta-G solvation = -2780.606711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13007 -38.26177 -35.29256 -34.99401 -32.02519 -30.61364 -30.34106 -28.78191 -25.92283 -24.28232 -22.57043 -21.97858 -21.38118 -18.68561 -16.95121 -16.75699 -16.31473 -15.63581 -15.25606 -14.65325 -14.33192 -13.99875 -13.42466 -13.17549 -13.13763 -12.79450 -12.75940 -12.32478 -11.70201 -11.35006 -11.24992 -11.04969 -10.88740 -10.54543 -10.46149 -10.21870 -10.13330 -8.94073 -8.75543 -8.68517 -8.60205 -7.86006 -7.55825 -6.23137 -3.79321 1.64119 1.71492 3.21680 3.29711 3.35704 3.58301 4.06363 4.27037 4.35382 5.08641 5.18774 5.20658 5.23003 5.37805 5.43702 5.54420 5.69636 5.76284 5.86590 5.89477 6.07663 6.15392 6.28920 6.33456 6.63560 6.77413 6.87754 6.95451 7.06470 7.24752 7.39763 7.66455 7.83409 8.43400 8.71627 9.29623 9.58376 10.15765 10.83869 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.006649 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.402376 B = 4210.041540 C = 4608.532876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.025 3.975 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.288 4.288 8 H 0.098 0.902 9 N -0.461 5.461 10 C 0.144 3.856 11 C -0.160 4.160 12 C 0.123 3.877 13 N -0.599 5.599 14 C 0.188 3.812 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.136 4.136 18 C -0.114 4.114 19 C -0.128 4.128 20 C 0.663 3.337 21 O -0.613 6.613 22 H 0.264 0.736 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 -12.037 -2.869 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.417 4.417 8 H 0.115 0.885 9 N -0.184 5.184 10 C 0.020 3.980 11 C -0.199 4.199 12 C 0.001 3.999 13 N -0.335 5.335 14 C 0.096 3.904 15 C -0.128 4.128 16 C -0.132 4.132 17 C -0.154 4.154 18 C -0.133 4.133 19 C -0.148 4.148 20 C 0.368 3.632 21 O -0.495 6.495 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.096 -11.752 -2.551 12.076 hybrid contribution 0.105 0.920 -0.019 0.926 sum -0.991 -10.833 -2.569 11.177 Atomic orbital electron populations 1.70013 1.05737 1.27070 1.50367 1.25295 0.95542 0.99531 0.97280 0.85853 0.79792 0.81393 0.77602 1.19339 1.20807 1.20889 1.19581 0.94077 0.81866 1.46158 0.88477 1.42601 1.25016 1.03693 1.47108 1.21281 0.88746 0.93905 0.94027 1.22395 1.02512 0.96717 0.98239 1.21449 0.86658 0.98850 0.92988 1.44523 1.27921 1.03965 1.57084 1.17365 0.93146 0.86590 0.93317 1.21333 0.95777 0.95647 1.00064 1.20964 0.99547 0.95290 0.97383 1.21033 0.95927 1.00294 0.98137 1.20922 0.96019 0.96414 0.99944 1.21286 1.01263 0.96298 0.95915 1.15604 0.85307 0.80069 0.82232 1.90761 1.27494 1.85539 1.45668 0.92555 0.91452 0.90304 0.89801 0.91585 0.91462 0.92506 0.86264 0.86262 0.86470 0.86246 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 10.83 55.49 0.60 -23.67 16 2 C 0.03 0.68 5.02 -17.47 -0.09 0.60 16 3 Si 0.93 21.28 29.57 -169.99 -5.03 16.25 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.29 -8.30 9.13 -14.93 -0.14 -8.43 16 8 H 0.10 2.94 7.36 -52.48 -0.39 2.55 16 9 N -0.46 -12.30 2.96 -120.51 -0.36 -12.66 16 10 C 0.14 3.26 4.76 -3.98 -0.02 3.24 16 11 C -0.16 -2.74 6.20 -26.49 -0.16 -2.91 16 12 C 0.12 2.08 6.41 -4.00 -0.03 2.05 16 13 N -0.60 -12.64 2.87 -119.16 -0.34 -12.98 16 14 C 0.19 3.61 4.58 -83.70 -0.38 3.23 16 15 C -0.11 -1.94 9.42 -39.39 -0.37 -2.31 16 16 C -0.11 -1.66 10.04 -39.61 -0.40 -2.06 16 17 C -0.14 -1.81 10.04 -39.55 -0.40 -2.20 16 18 C -0.11 -1.59 10.04 -39.61 -0.40 -1.99 16 19 C -0.13 -2.13 9.87 -39.39 -0.39 -2.51 16 20 C 0.66 17.40 7.78 -88.06 -0.68 16.71 16 21 O -0.61 -18.25 15.33 5.29 0.08 -18.17 16 22 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 23 H 0.07 1.61 7.52 -51.93 -0.39 1.22 16 24 H 0.08 1.87 7.15 -51.93 -0.37 1.50 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 279.27 15.07 4.21 4.21 Total: -1.00 -32.87 279.27 -8.37 -41.24 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.08 Total: 2.37 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.45 Total: 3.41 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.10 Total: -49.31 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.08 Total: -18.17 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.87 -8.37 -41.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259684833.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.136 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds