Wall clock time and date at job start Mon Mar 30 2020 04:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86799 * 120.00078 * 2 1 4 4 H 1.48506 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47377 * 299.99901 * 3 2 1 6 6 H 1.48494 * 109.47208 * 60.00043 * 3 2 1 7 7 C 1.38887 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99787 * 193.94816 * 7 2 1 9 9 N 1.37161 * 119.99862 * 13.94830 * 7 2 1 10 10 C 1.46381 * 119.33045 * 24.59222 * 9 7 2 11 11 C 1.53245 * 109.15340 * 150.94208 * 10 9 7 12 12 C 1.53215 * 108.57476 * 55.46688 * 11 10 9 13 13 N 1.46380 * 109.16619 * 304.54576 * 12 11 10 14 14 C 1.39911 * 119.33086 * 209.07154 * 13 12 11 15 15 C 1.38880 * 120.07245 * 110.85312 * 14 13 12 16 16 C 1.38105 * 119.92911 * 179.79097 * 15 14 13 17 17 C 1.38282 * 120.07188 * 0.46006 * 16 15 14 18 18 C 1.38284 * 120.14334 * 359.78903 * 17 16 15 19 19 C 1.38116 * 120.06898 * 359.97438 * 18 17 16 20 20 C 1.34140 * 121.34131 * 29.05002 * 13 12 11 21 21 O 1.21585 * 118.69715 * 179.43059 * 20 13 12 22 22 H 0.97006 * 120.00093 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.51971 * 270.83687 * 10 9 7 24 24 H 1.08999 * 109.52700 * 31.03599 * 10 9 7 25 25 H 1.08994 * 109.62357 * 175.20040 * 11 10 9 26 26 H 1.09000 * 109.61921 * 295.75378 * 11 10 9 27 27 H 1.09003 * 109.53133 * 184.63763 * 12 11 10 28 28 H 1.09002 * 109.56334 * 64.47857 * 12 11 10 29 29 H 1.08007 * 120.03221 * 0.02562 * 15 14 13 30 30 H 1.08001 * 119.96569 * 180.22876 * 16 15 14 31 31 H 1.08002 * 119.93265 * 179.76945 * 17 16 15 32 32 H 1.08001 * 119.97050 * 180.02562 * 18 17 16 33 33 H 1.07994 * 120.03443 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.7087 1.3463 -0.0006 5 1 1.8900 2.3965 -1.2126 6 1 1.8899 2.3964 1.2124 7 6 2.0091 -1.2028 -0.0005 8 1 3.0652 -1.2167 0.2249 9 7 1.3535 -2.3730 -0.2874 10 6 0.1316 -2.3316 -1.0923 11 6 -0.0051 -3.6470 -1.8666 12 6 0.0374 -4.8080 -0.8678 13 7 1.2642 -4.7149 -0.0747 14 6 1.8431 -5.8835 0.4321 15 6 3.0555 -6.3351 -0.0728 16 6 3.6263 -7.4866 0.4326 17 6 2.9874 -8.1950 1.4336 18 6 1.7775 -7.7510 1.9349 19 6 1.2038 -6.5974 1.4372 20 6 1.8450 -3.5320 0.1758 21 8 2.8573 -3.5095 0.8489 22 1 -0.4850 0.8401 -0.0004 23 1 -0.7309 -2.2025 -0.4386 24 1 0.1858 -1.4996 -1.7944 25 1 -0.9543 -3.6595 -2.4022 26 1 0.8186 -3.7426 -2.5740 27 1 0.0242 -5.7545 -1.4084 28 1 -0.8282 -4.7534 -0.2076 29 1 3.5533 -5.7842 -0.8572 30 1 4.5710 -7.8363 0.0430 31 1 3.4340 -9.0973 1.8246 32 1 1.2811 -8.3062 2.7170 33 1 0.2587 -6.2514 1.8288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259684833.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:14 Heat of formation + Delta-G solvation = 0.867115 kcal Electronic energy + Delta-G solvation = -17874.376987 eV Core-core repulsion = 15092.901625 eV Total energy + Delta-G solvation = -2781.475362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.80915 -39.67390 -37.21940 -36.68368 -33.88419 -32.12875 -31.80939 -30.20588 -27.78064 -26.06042 -24.11854 -23.31219 -22.81960 -20.34293 -18.82050 -18.29390 -18.14624 -17.05555 -16.85943 -16.49773 -15.88912 -15.52025 -14.99762 -14.89962 -14.45199 -14.44338 -14.24641 -13.62489 -13.41216 -13.14832 -12.90658 -12.50809 -12.26731 -12.17188 -12.08896 -12.00989 -12.00705 -10.97959 -10.75137 -10.12424 -9.82888 -9.69541 -9.24607 -8.31101 -5.95729 0.40411 0.51010 1.38001 1.39725 1.54061 1.96090 2.33003 2.40537 2.87744 3.11695 3.39926 3.94014 4.01100 4.10694 4.12774 4.29372 4.33974 4.50464 4.59857 4.64269 4.74522 4.81542 4.85554 5.12424 5.14354 5.43226 5.45572 5.48719 5.58872 5.61037 5.76128 5.90034 6.26744 6.37626 6.73174 7.21587 7.60095 8.15426 8.74213 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.006649 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.402376 B = 4210.041540 C = 4608.532876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 0.992 3.008 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.276 1.276 7 C -0.328 4.328 8 H 0.066 0.934 9 N -0.478 5.478 10 C 0.149 3.851 11 C -0.146 4.146 12 C 0.119 3.881 13 N -0.595 5.595 14 C 0.147 3.853 15 C -0.133 4.133 16 C -0.112 4.112 17 C -0.124 4.124 18 C -0.107 4.107 19 C -0.139 4.139 20 C 0.655 3.345 21 O -0.664 6.664 22 H 0.272 0.728 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.128 0.872 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 -13.849 -2.878 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.207 4.207 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.202 1.202 7 C -0.457 4.457 8 H 0.084 0.916 9 N -0.201 5.201 10 C 0.026 3.974 11 C -0.184 4.184 12 C -0.002 4.002 13 N -0.330 5.330 14 C 0.055 3.945 15 C -0.153 4.153 16 C -0.131 4.131 17 C -0.142 4.142 18 C -0.125 4.125 19 C -0.159 4.159 20 C 0.359 3.641 21 O -0.549 6.549 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.147 0.853 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.164 0.836 31 H 0.177 0.823 32 H 0.174 0.826 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.860 -13.610 -2.590 13.978 hybrid contribution 0.322 1.380 0.038 1.418 sum -1.538 -12.230 -2.552 12.587 Atomic orbital electron populations 1.70096 1.06595 1.28272 1.49431 1.26069 0.96501 1.02110 0.96008 0.84901 0.78023 0.77133 0.78377 1.20035 1.18770 1.20163 1.19495 0.93410 0.83860 1.48910 0.91594 1.42819 1.25950 1.03426 1.47906 1.21244 0.86439 0.96519 0.93243 1.22344 1.04750 0.93640 0.97706 1.21737 0.85244 1.00286 0.92967 1.44443 1.28620 1.02946 1.56962 1.17740 0.94561 0.86669 0.95486 1.21356 0.95891 0.97324 1.00763 1.21313 1.00415 0.93987 0.97344 1.21536 0.95207 1.00904 0.96518 1.21370 0.96079 0.95223 0.99872 1.21429 1.01623 0.97317 0.95541 1.15909 0.84928 0.81370 0.81875 1.90684 1.29696 1.86708 1.47828 0.91884 0.93200 0.92143 0.85349 0.91859 0.87851 0.91421 0.88453 0.83582 0.82292 0.82605 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.92 10.83 21.65 0.23 -49.68 16 2 C -0.01 -0.35 5.02 84.90 0.43 0.08 16 3 Si 0.99 44.36 29.57 68.60 2.03 46.39 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.33 -19.87 9.13 84.02 0.77 -19.11 16 8 H 0.07 4.29 7.36 -2.91 -0.02 4.27 16 9 N -0.48 -26.68 2.96 -653.80 -1.93 -28.62 16 10 C 0.15 6.87 4.76 86.48 0.41 7.28 16 11 C -0.15 -4.87 6.20 30.75 0.19 -4.68 16 12 C 0.12 3.87 6.41 86.47 0.55 4.42 16 13 N -0.60 -25.61 2.87 -649.52 -1.86 -27.47 16 14 C 0.15 5.66 4.58 38.16 0.17 5.84 16 15 C -0.13 -4.83 9.42 22.39 0.21 -4.62 16 16 C -0.11 -3.07 10.04 22.25 0.22 -2.85 16 17 C -0.12 -2.82 10.04 22.29 0.22 -2.60 16 18 C -0.11 -2.63 10.04 22.25 0.22 -2.40 16 19 C -0.14 -4.47 9.87 22.39 0.22 -4.25 16 20 C 0.66 36.02 7.78 179.45 1.40 37.41 16 21 O -0.66 -41.92 15.33 -3.98 -0.06 -41.98 16 22 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 23 H 0.05 2.44 7.52 -2.39 -0.02 2.42 16 24 H 0.06 2.95 7.15 -2.39 -0.02 2.93 16 25 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.10 2.66 8.04 -2.39 -0.02 2.64 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.10 3.82 8.06 -2.91 -0.02 3.80 16 30 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -76.38 279.27 4.53 -71.85 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.10 Total: 14.97 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.02 Total: 14.54 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -3.56 Total: -105.77 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -0.06 Total: -41.98 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -76.38 4.53 -71.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259684833.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.714 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds