Wall clock time and date at job start Mon Mar 30 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99752 * 2 1 4 4 H 1.48502 * 109.46850 * 265.00213 * 3 2 1 5 5 H 1.48498 * 109.47021 * 25.00286 * 3 2 1 6 6 H 1.48496 * 109.46898 * 145.00201 * 3 2 1 7 7 C 1.37881 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99673 * 184.88196 * 7 2 1 9 9 C 1.50695 * 120.00028 * 4.88735 * 7 2 1 10 10 H 1.09001 * 109.47246 * 174.55782 * 9 7 2 11 11 N 1.46501 * 109.47303 * 54.55031 * 9 7 2 12 12 C 1.34776 * 119.99580 * 89.52538 * 11 9 7 13 13 O 1.21282 * 120.00182 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99831 * 179.97438 * 12 11 9 15 15 C 1.53000 * 117.50160 * 248.74613 * 14 12 11 16 16 C 1.52998 * 117.49797 * 180.08370 * 14 12 11 17 17 C 1.50699 * 109.46908 * 294.55240 * 9 7 2 18 18 C 1.38226 * 119.61864 * 274.73220 * 17 9 7 19 19 C 1.38636 * 119.16233 * 179.75427 * 18 17 9 20 20 C 1.38677 * 118.41630 * 0.50851 * 19 18 17 21 21 C 1.38183 * 119.16340 * 359.73194 * 20 19 18 22 22 N 1.31859 * 119.62043 * 95.00014 * 17 9 7 23 23 H 0.96992 * 120.00228 * 359.97438 * 1 2 3 24 24 H 0.96994 * 120.00043 * 269.52438 * 11 9 7 25 25 H 1.08998 * 115.55088 * 34.42046 * 14 12 11 26 26 H 1.09001 * 117.49250 * 0.02562 * 15 14 12 27 27 H 1.08998 * 117.49915 * 145.01719 * 15 14 12 28 28 H 1.08997 * 117.50242 * 214.98019 * 16 14 12 29 29 H 1.09002 * 117.50211 * 359.97438 * 16 14 12 30 30 H 1.08000 * 120.42376 * 359.97438 * 18 17 9 31 31 H 1.07997 * 120.78827 * 180.21209 * 19 18 17 32 32 H 1.07999 * 120.41422 * 179.70492 * 20 19 18 33 33 H 1.07997 * 119.61133 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9855 -1.3948 5 1 1.3977 2.6809 0.5918 6 1 3.4898 1.4731 0.8030 7 6 2.0046 -1.1941 -0.0005 8 1 3.0817 -1.1957 0.0791 9 6 1.2553 -2.4967 -0.1123 10 1 1.9661 -3.3191 -0.1930 11 7 0.4029 -2.4692 -1.3035 12 6 0.8859 -2.8947 -2.4876 13 8 2.0263 -3.3000 -2.5671 14 6 0.0090 -2.8670 -3.7129 15 6 -0.4318 -4.2107 -4.2968 16 6 0.6148 -3.3650 -5.0266 17 6 0.3998 -2.6908 1.1131 18 6 0.9493 -3.2595 2.2468 19 6 0.1551 -3.4289 3.3704 20 6 -1.1710 -3.0279 3.3078 21 6 -1.6518 -2.4717 2.1378 22 7 -0.8657 -2.3211 1.0896 23 1 -0.4850 0.8400 0.0004 24 1 -0.5089 -2.1447 -1.2400 25 1 -0.6976 -2.0388 -3.7667 26 1 -0.0879 -5.1148 -3.7944 27 1 -1.4283 -4.2665 -4.7349 28 1 0.3065 -2.8649 -5.9446 29 1 1.6478 -3.7124 -5.0048 30 1 1.9852 -3.5647 2.2584 31 1 0.5582 -3.8671 4.2714 32 1 -1.8198 -3.1493 4.1626 33 1 -2.6832 -2.1565 2.0812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259686940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:39 Heat of formation + Delta-G solvation = 26.550946 kcal Electronic energy + Delta-G solvation = -17663.204603 eV Core-core repulsion = 14882.842975 eV Total energy + Delta-G solvation = -2780.361628 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37003 -38.59947 -35.68490 -34.27531 -31.82783 -31.40591 -30.51386 -27.20429 -24.16157 -23.00488 -22.47070 -22.05546 -20.52919 -18.91641 -16.89167 -16.53253 -15.85951 -15.37769 -14.90365 -14.67221 -14.28345 -14.05463 -13.44172 -13.17249 -12.70946 -12.42793 -12.09457 -11.95999 -11.69412 -11.21581 -11.03100 -10.92143 -10.82931 -10.17897 -10.07414 -9.88216 -9.81729 -9.02528 -8.80700 -8.61166 -8.29750 -8.03126 -7.45755 -6.07517 -4.23994 2.05711 2.21070 3.25698 3.31766 3.35630 3.51939 4.33033 4.36518 4.46499 4.82942 5.15764 5.24804 5.36266 5.38793 5.45095 5.52052 5.74213 5.86949 5.88824 5.96135 6.08529 6.24955 6.39013 6.49963 6.51297 6.62535 6.79772 6.97187 7.09197 7.62685 7.76870 7.93689 8.06656 8.72130 9.02918 9.15833 9.45273 9.60679 10.89124 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.010019 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.619268 B = 2793.886387 C = 3901.222317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.306 3.694 10 H 0.061 0.939 11 N -0.673 5.673 12 C 0.530 3.470 13 O -0.573 6.573 14 C -0.182 4.182 15 C -0.161 4.161 16 C -0.154 4.154 17 C 0.178 3.822 18 C -0.180 4.180 19 C -0.087 4.087 20 C -0.212 4.212 21 C 0.093 3.907 22 N -0.432 5.432 23 H 0.262 0.738 24 H 0.407 0.593 25 H 0.116 0.884 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 -5.319 -0.106 7.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.203 3.797 10 H 0.079 0.921 11 N -0.321 5.321 12 C 0.314 3.686 13 O -0.455 6.455 14 C -0.203 4.203 15 C -0.198 4.198 16 C -0.192 4.192 17 C 0.040 3.960 18 C -0.201 4.201 19 C -0.113 4.113 20 C -0.232 4.232 21 C -0.065 4.065 22 N -0.140 5.140 23 H 0.072 0.928 24 H 0.243 0.757 25 H 0.134 0.866 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.452 -5.101 -0.866 6.826 hybrid contribution 0.228 1.167 1.104 1.623 sum -4.224 -3.934 0.238 5.777 Atomic orbital electron populations 1.70020 1.05302 1.26554 1.45927 1.25074 0.94991 0.99183 0.93728 0.86633 0.79969 0.83111 0.78470 1.20357 1.21302 1.19845 1.21235 0.93395 0.89640 1.52694 0.91639 1.17489 0.86714 0.97147 0.78360 0.92070 1.46195 1.17555 1.60784 1.07541 1.19330 0.86897 0.78350 0.83975 1.90569 1.19031 1.50291 1.85620 1.22295 1.03710 0.99528 0.94783 1.22845 0.99405 0.94035 1.03549 1.22853 0.99488 1.02872 0.93972 1.22018 0.90124 0.87411 0.96494 1.21767 1.00739 1.03122 0.94470 1.21279 0.94007 0.98296 0.97683 1.21832 0.96563 1.05145 0.99691 1.22659 0.99230 0.95272 0.89380 1.67589 1.05103 1.12189 1.29166 0.92833 0.75664 0.86612 0.88700 0.88623 0.88803 0.87725 0.85890 0.86434 0.86676 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.28 10.30 55.43 0.57 -21.71 16 2 C 0.08 2.07 5.24 -17.82 -0.09 1.98 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.39 8.87 -34.44 -0.31 -14.70 16 8 H 0.07 1.81 7.82 -52.48 -0.41 1.40 16 9 C 0.31 7.64 2.47 -70.24 -0.17 7.46 16 10 H 0.06 1.56 7.40 -51.93 -0.38 1.17 16 11 N -0.67 -15.93 4.34 -56.07 -0.24 -16.17 16 12 C 0.53 12.12 7.61 -10.99 -0.08 12.04 16 13 O -0.57 -14.83 15.84 5.56 0.09 -14.74 16 14 C -0.18 -3.26 6.19 -91.77 -0.57 -3.83 16 15 C -0.16 -2.35 10.24 -26.69 -0.27 -2.62 16 16 C -0.15 -2.38 10.05 -26.69 -0.27 -2.64 16 17 C 0.18 4.09 5.37 -82.59 -0.44 3.65 16 18 C -0.18 -3.64 9.76 -39.44 -0.39 -4.02 16 19 C -0.09 -1.50 10.18 -39.27 -0.40 -1.90 16 20 C -0.21 -3.57 10.11 -39.44 -0.40 -3.97 16 21 C 0.09 1.76 11.18 -17.55 -0.20 1.56 16 22 N -0.43 -9.66 7.53 -9.48 -0.07 -9.73 16 23 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 24 H 0.41 9.55 7.09 -40.82 -0.29 9.26 16 25 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 26 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.76 7.67 -51.93 -0.40 1.36 16 30 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 31 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 289.23 15.07 4.36 4.36 Total: -1.00 -30.05 289.23 -7.91 -37.96 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -4.00 Total: 10.94 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.59 Total: -6.99 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.26 Total: -47.61 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.09 Total: -14.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.05 -7.91 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.509 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds