Wall clock time and date at job start Mon Mar 30 2020 04:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99752 * 2 1 4 4 H 1.48502 * 109.46850 * 265.00213 * 3 2 1 5 5 H 1.48498 * 109.47021 * 25.00286 * 3 2 1 6 6 H 1.48496 * 109.46898 * 145.00201 * 3 2 1 7 7 C 1.37881 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99673 * 184.88196 * 7 2 1 9 9 C 1.50695 * 120.00028 * 4.88735 * 7 2 1 10 10 H 1.09001 * 109.47246 * 174.55782 * 9 7 2 11 11 N 1.46501 * 109.47303 * 54.55031 * 9 7 2 12 12 C 1.34776 * 119.99580 * 89.52538 * 11 9 7 13 13 O 1.21282 * 120.00182 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99831 * 179.97438 * 12 11 9 15 15 C 1.53000 * 117.50160 * 248.74613 * 14 12 11 16 16 C 1.52998 * 117.49797 * 180.08370 * 14 12 11 17 17 C 1.50699 * 109.46908 * 294.55240 * 9 7 2 18 18 C 1.38226 * 119.61864 * 274.73220 * 17 9 7 19 19 C 1.38636 * 119.16233 * 179.75427 * 18 17 9 20 20 C 1.38677 * 118.41630 * 0.50851 * 19 18 17 21 21 C 1.38183 * 119.16340 * 359.73194 * 20 19 18 22 22 N 1.31859 * 119.62043 * 95.00014 * 17 9 7 23 23 H 0.96992 * 120.00228 * 359.97438 * 1 2 3 24 24 H 0.96994 * 120.00043 * 269.52438 * 11 9 7 25 25 H 1.08998 * 115.55088 * 34.42046 * 14 12 11 26 26 H 1.09001 * 117.49250 * 0.02562 * 15 14 12 27 27 H 1.08998 * 117.49915 * 145.01719 * 15 14 12 28 28 H 1.08997 * 117.50242 * 214.98019 * 16 14 12 29 29 H 1.09002 * 117.50211 * 359.97438 * 16 14 12 30 30 H 1.08000 * 120.42376 * 359.97438 * 18 17 9 31 31 H 1.07997 * 120.78827 * 180.21209 * 19 18 17 32 32 H 1.07999 * 120.41422 * 179.70492 * 20 19 18 33 33 H 1.07997 * 119.61133 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9855 -1.3948 5 1 1.3977 2.6809 0.5918 6 1 3.4898 1.4731 0.8030 7 6 2.0046 -1.1941 -0.0005 8 1 3.0817 -1.1957 0.0791 9 6 1.2553 -2.4967 -0.1123 10 1 1.9661 -3.3191 -0.1930 11 7 0.4029 -2.4692 -1.3035 12 6 0.8859 -2.8947 -2.4876 13 8 2.0263 -3.3000 -2.5671 14 6 0.0090 -2.8670 -3.7129 15 6 -0.4318 -4.2107 -4.2968 16 6 0.6148 -3.3650 -5.0266 17 6 0.3998 -2.6908 1.1131 18 6 0.9493 -3.2595 2.2468 19 6 0.1551 -3.4289 3.3704 20 6 -1.1710 -3.0279 3.3078 21 6 -1.6518 -2.4717 2.1378 22 7 -0.8657 -2.3211 1.0896 23 1 -0.4850 0.8400 0.0004 24 1 -0.5089 -2.1447 -1.2400 25 1 -0.6976 -2.0388 -3.7667 26 1 -0.0879 -5.1148 -3.7944 27 1 -1.4283 -4.2665 -4.7349 28 1 0.3065 -2.8649 -5.9446 29 1 1.6478 -3.7124 -5.0048 30 1 1.9852 -3.5647 2.2584 31 1 0.5582 -3.8671 4.2714 32 1 -1.8198 -3.1493 4.1626 33 1 -2.6832 -2.1565 2.0812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259686940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:38 Heat of formation + Delta-G solvation = 7.879823 kcal Electronic energy + Delta-G solvation = -17664.014243 eV Core-core repulsion = 14882.842975 eV Total energy + Delta-G solvation = -2781.171268 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98619 -40.22892 -37.17700 -36.09408 -33.79955 -32.91470 -32.13519 -29.01961 -25.96104 -24.56813 -23.94880 -23.24954 -22.19069 -20.65570 -18.60726 -18.37817 -17.34273 -17.00073 -16.68359 -16.18867 -15.87083 -15.69800 -15.14575 -14.85875 -14.32953 -14.05496 -13.71305 -13.56199 -13.33648 -12.91696 -12.73459 -12.53352 -12.37554 -11.89758 -11.78649 -11.44847 -11.31760 -10.80576 -10.50960 -10.42147 -9.89176 -9.63181 -9.31234 -8.07539 -6.30823 0.54508 0.76582 1.34478 1.37729 1.44690 1.87220 2.37782 2.70155 3.04623 3.17138 3.32709 3.86569 3.91943 4.06764 4.11810 4.23465 4.29742 4.46001 4.48343 4.62960 4.75285 4.86338 4.99133 5.07840 5.10665 5.14801 5.28922 5.48931 5.54308 5.64864 6.05041 6.07748 6.18326 6.65200 7.17743 7.39203 7.60085 7.80076 8.86059 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.010019 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.619268 B = 2793.886387 C = 3901.222317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.046 3.954 3 Si 0.941 3.059 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.559 4.559 8 H 0.043 0.957 9 C 0.305 3.695 10 H 0.035 0.965 11 N -0.672 5.672 12 C 0.517 3.483 13 O -0.615 6.615 14 C -0.208 4.208 15 C -0.134 4.134 16 C -0.146 4.146 17 C 0.148 3.852 18 C -0.199 4.199 19 C -0.080 4.080 20 C -0.194 4.194 21 C 0.075 3.925 22 N -0.459 5.459 23 H 0.262 0.738 24 H 0.407 0.593 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 -5.376 0.565 8.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.160 4.160 3 Si 0.767 3.233 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.598 4.598 8 H 0.062 0.938 9 C 0.201 3.799 10 H 0.053 0.947 11 N -0.319 5.319 12 C 0.304 3.696 13 O -0.500 6.500 14 C -0.229 4.229 15 C -0.172 4.172 16 C -0.183 4.183 17 C 0.010 3.990 18 C -0.219 4.219 19 C -0.106 4.106 20 C -0.214 4.214 21 C -0.083 4.083 22 N -0.168 5.168 23 H 0.071 0.929 24 H 0.244 0.756 25 H 0.147 0.853 26 H 0.104 0.896 27 H 0.153 0.847 28 H 0.147 0.853 29 H 0.102 0.898 30 H 0.143 0.857 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.497 -5.160 -0.193 8.299 hybrid contribution 0.816 1.097 0.965 1.673 sum -5.681 -4.063 0.771 7.027 Atomic orbital electron populations 1.70109 1.05606 1.26798 1.45702 1.25531 0.95846 1.01084 0.93567 0.85856 0.79007 0.80370 0.78036 1.20748 1.20232 1.20103 1.21312 0.92685 0.91496 1.54298 0.93848 1.17292 0.87234 0.95242 0.80089 0.94656 1.46137 1.17232 1.60749 1.07736 1.20239 0.87055 0.77143 0.85123 1.90531 1.21043 1.52035 1.86389 1.22229 1.04575 1.02492 0.93564 1.23001 1.01018 0.91672 1.01480 1.22971 0.98861 1.02604 0.93888 1.21670 0.90834 0.90162 0.96331 1.21944 1.01472 1.03497 0.94995 1.21736 0.93952 0.97115 0.97820 1.22298 0.96758 1.02254 1.00050 1.23209 1.00089 0.95486 0.89516 1.67432 1.05094 1.13032 1.31249 0.92898 0.75607 0.85268 0.89609 0.84714 0.85316 0.89820 0.85718 0.82401 0.82228 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.19 10.30 21.45 0.22 -44.97 16 2 C 0.05 2.52 5.24 84.66 0.44 2.96 16 3 Si 0.94 43.99 29.54 68.60 2.03 46.01 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.56 -31.77 8.87 25.60 0.23 -31.54 16 8 H 0.04 2.55 7.82 -2.91 -0.02 2.53 16 9 C 0.31 16.06 2.47 43.50 0.11 16.17 16 10 H 0.04 1.96 7.40 -2.39 -0.02 1.94 16 11 N -0.67 -33.11 4.34 -449.69 -1.95 -35.07 16 12 C 0.52 24.58 7.61 87.66 0.67 25.24 16 13 O -0.62 -33.58 15.84 -3.03 -0.05 -33.63 16 14 C -0.21 -7.33 6.19 -11.54 -0.07 -7.41 16 15 C -0.13 -3.64 10.24 30.62 0.31 -3.33 16 16 C -0.15 -4.28 10.05 30.62 0.31 -3.97 16 17 C 0.15 6.96 5.37 42.55 0.23 7.19 16 18 C -0.20 -8.02 9.76 22.36 0.22 -7.80 16 19 C -0.08 -2.55 10.18 22.47 0.23 -2.33 16 20 C -0.19 -5.81 10.11 22.36 0.23 -5.59 16 21 C 0.08 2.69 11.18 84.67 0.95 3.63 16 22 N -0.46 -20.48 7.53 -183.89 -1.39 -21.87 16 23 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 24 H 0.41 19.70 7.09 -92.71 -0.66 19.05 16 25 H 0.13 4.18 8.14 -2.39 -0.02 4.16 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.08 2.82 7.67 -2.39 -0.02 2.81 16 30 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 31 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.16 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -68.19 289.23 3.17 -65.03 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.46 Total: 31.26 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 3.84 Total: -6.77 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -3.12 Total: -101.90 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.05 Total: -33.63 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.19 3.17 -65.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.907 kcal (2) G-P(sol) polarization free energy of solvation -68.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds