Wall clock time and date at job start Mon Mar 30 2020 04:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86794 * 120.00222 * 2 1 4 4 H 1.48502 * 109.47071 * 274.67683 * 3 2 1 5 5 H 1.48506 * 109.47197 * 34.67180 * 3 2 1 6 6 H 1.48503 * 109.47543 * 154.67208 * 3 2 1 7 7 C 1.37882 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99590 * 186.00413 * 7 2 1 9 9 C 1.50699 * 120.00478 * 5.99808 * 7 2 1 10 10 H 1.08999 * 110.88342 * 309.06930 * 9 7 2 11 11 C 1.55151 * 111.00805 * 185.17967 * 9 7 2 12 12 C 1.54322 * 102.94371 * 206.38872 * 11 9 7 13 13 N 1.47020 * 107.27190 * 22.19112 * 12 11 9 14 14 C 1.34782 * 125.64999 * 181.02083 * 13 12 11 15 15 O 1.21516 * 119.99736 * 180.02562 * 14 13 12 16 16 C 1.48163 * 119.99604 * 0.02982 * 14 13 12 17 17 C 1.39317 * 119.71920 * 179.97438 * 16 14 13 18 18 C 1.38585 * 119.05629 * 179.97438 * 17 16 14 19 19 C 1.38627 * 118.49008 * 0.02562 * 18 17 16 20 20 C 1.38555 * 119.35455 * 359.97438 * 19 18 17 21 21 N 1.31520 * 120.89890 * 0.02562 * 20 19 18 22 22 C 1.47425 * 108.70271 * 1.29196 * 13 12 11 23 23 H 0.97000 * 120.00321 * 0.02562 * 1 2 3 24 24 H 1.08994 * 110.72156 * 88.02534 * 11 9 7 25 25 H 1.09005 * 110.71661 * 324.75123 * 11 9 7 26 26 H 1.09001 * 109.88340 * 262.77406 * 12 11 9 27 27 H 1.09002 * 110.01351 * 141.68417 * 12 11 9 28 28 H 1.08001 * 120.46933 * 0.02562 * 17 16 14 29 29 H 1.08003 * 120.75565 * 179.72281 * 18 17 16 30 30 H 1.08008 * 120.32061 * 179.97438 * 19 18 17 31 31 H 1.07998 * 119.55167 * 179.97438 * 20 19 18 32 32 H 1.08993 * 110.37118 * 94.48091 * 22 13 12 33 33 H 1.09008 * 110.36587 * 216.80730 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3978 2.1034 -1.3954 5 1 1.4994 2.6221 0.7965 6 1 3.5926 1.4136 0.5989 7 6 2.0044 -1.1941 0.0005 8 1 3.0800 -1.1966 0.0984 9 6 1.2572 -2.4957 -0.1353 10 1 0.4386 -2.5505 0.5824 11 6 2.2154 -3.7060 0.0204 12 6 1.5061 -4.8144 -0.7858 13 7 0.6053 -4.1515 -1.7401 14 6 -0.2088 -4.7749 -2.6149 15 8 -0.9130 -4.1229 -3.3603 16 6 -0.2451 -6.2552 -2.6675 17 6 -1.0892 -6.8936 -3.5736 18 6 -1.1118 -8.2787 -3.6115 19 6 -0.2896 -8.9775 -2.7412 20 6 0.5248 -8.2770 -1.8662 21 7 0.5265 -6.9619 -1.8512 22 6 0.7448 -2.6920 -1.5863 23 1 -0.4850 0.8400 -0.0004 24 1 2.3093 -3.9913 1.0681 25 1 3.1922 -3.4822 -0.4085 26 1 0.9306 -5.4511 -0.1138 27 1 2.2412 -5.4127 -1.3241 28 1 -1.7163 -6.3171 -4.2376 29 1 -1.7589 -8.8019 -4.2999 30 1 -0.2839 -10.0576 -2.7453 31 1 1.1663 -8.8182 -1.1865 32 1 1.4682 -2.3024 -2.3025 33 1 -0.2206 -2.2028 -1.7167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:22 Heat of formation + Delta-G solvation = 5.753800 kcal Electronic energy + Delta-G solvation = -17315.596629 eV Core-core repulsion = 14534.333169 eV Total energy + Delta-G solvation = -2781.263460 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45602 -38.67385 -36.63739 -33.16380 -32.49755 -31.43367 -30.33339 -28.00171 -25.54481 -24.05105 -23.39448 -22.12268 -19.82683 -19.32659 -17.06234 -16.73856 -16.49106 -15.91129 -15.16191 -14.97409 -14.51677 -14.40792 -13.91745 -13.28454 -13.18618 -12.60022 -12.38780 -12.13403 -11.71086 -11.69771 -11.35038 -10.96649 -10.55408 -10.48417 -10.05403 -9.95017 -9.78584 -9.26776 -9.22231 -9.14989 -9.02433 -8.48497 -7.81127 -6.08084 -4.12138 0.70034 1.16197 3.07184 3.29932 3.37770 3.39803 3.54864 4.00778 4.26169 4.41481 4.69028 4.81867 4.90654 5.02318 5.24123 5.34956 5.65630 5.72452 5.87848 5.94329 6.00245 6.16349 6.39480 6.56032 6.58177 6.82321 6.91124 6.99748 7.04638 7.39243 7.73835 7.76764 7.91194 8.23694 8.32892 8.68223 8.92641 9.53258 11.01919 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.049147 B = 0.005242 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.584753 B = 5339.972731 C = 5753.751860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.045 3.955 10 H 0.048 0.952 11 C -0.135 4.135 12 C 0.120 3.880 13 N -0.589 5.589 14 C 0.566 3.434 15 O -0.548 6.548 16 C 0.093 3.907 17 C -0.117 4.117 18 C -0.084 4.084 19 C -0.161 4.161 20 C 0.092 3.908 21 N -0.451 5.451 22 C 0.111 3.889 23 H 0.263 0.737 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.160 0.840 32 H 0.057 0.943 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -17.056 -3.910 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.026 3.974 10 H 0.067 0.933 11 C -0.173 4.173 12 C -0.003 4.003 13 N -0.319 5.319 14 C 0.352 3.648 15 O -0.427 6.427 16 C -0.045 4.045 17 C -0.138 4.138 18 C -0.110 4.110 19 C -0.181 4.181 20 C -0.067 4.067 21 N -0.163 5.163 22 C -0.010 4.010 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.165 0.835 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.177 0.823 32 H 0.075 0.925 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.387 -16.117 -3.753 16.552 hybrid contribution -0.147 0.305 -0.638 0.723 sum 0.239 -15.811 -4.391 16.412 Atomic orbital electron populations 1.69963 1.06037 1.26985 1.49210 1.25054 0.94834 0.99403 0.94495 0.86564 0.79928 0.83351 0.78099 1.20587 1.21207 1.19748 1.20995 0.93413 0.89919 1.51165 0.92045 1.19901 0.94334 0.92084 0.91068 0.93344 1.22836 0.99618 0.96312 0.98538 1.22064 0.92175 0.94939 0.91081 1.48737 1.38678 1.10034 1.34467 1.17547 0.80797 0.85298 0.81148 1.90754 1.43406 1.65883 1.42658 1.21424 0.94417 0.94872 0.93793 1.22155 0.98276 0.94986 0.98376 1.21592 0.97736 0.93765 0.97952 1.22326 0.97352 1.01509 0.96886 1.22879 0.96946 0.89831 0.97014 1.67940 1.19303 1.08352 1.20658 1.22957 1.01624 0.75656 1.00730 0.92704 0.91711 0.91809 0.91747 0.92114 0.83530 0.84358 0.84588 0.82263 0.92478 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.19 55.43 0.73 -24.86 16 2 C 0.07 1.80 5.40 -17.82 -0.10 1.70 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.87 8.45 -34.44 -0.29 -14.16 16 8 H 0.06 1.61 7.75 -52.48 -0.41 1.20 16 9 C 0.05 1.12 2.78 -89.50 -0.25 0.87 16 10 H 0.05 1.32 8.07 -51.93 -0.42 0.90 16 11 C -0.13 -2.70 6.39 -24.90 -0.16 -2.86 16 12 C 0.12 2.24 5.40 -3.07 -0.02 2.22 16 13 N -0.59 -12.72 3.32 -171.37 -0.57 -13.29 16 14 C 0.57 11.91 7.84 -12.18 -0.10 11.82 16 15 O -0.55 -13.00 16.58 5.35 0.09 -12.91 16 16 C 0.09 1.57 6.72 -83.01 -0.56 1.01 16 17 C -0.12 -1.60 9.63 -39.05 -0.38 -1.98 16 18 C -0.08 -0.84 10.17 -39.31 -0.40 -1.24 16 19 C -0.16 -1.44 10.11 -39.32 -0.40 -1.84 16 20 C 0.09 1.01 11.18 -17.57 -0.20 0.81 16 21 N -0.45 -6.76 6.85 -9.80 -0.07 -6.83 16 22 C 0.11 2.73 6.26 -2.41 -0.02 2.72 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.06 1.25 7.99 -51.93 -0.41 0.83 16 26 H 0.06 1.15 7.41 -51.93 -0.38 0.76 16 27 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 28 H 0.15 1.97 7.64 -52.49 -0.40 1.57 16 29 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 30 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 31 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 33 H 0.07 2.06 8.04 -51.92 -0.42 1.64 16 LS Contribution 284.23 15.07 4.28 4.28 Total: -1.00 -31.50 284.23 -7.48 -38.98 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.08 Total: -0.50 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.85 Total: -0.93 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.09 Total: -44.97 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.50 -7.48 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.736 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds