Wall clock time and date at job start Mon Mar 30 2020 04:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86794 * 120.00222 * 2 1 4 4 H 1.48502 * 109.47071 * 274.67683 * 3 2 1 5 5 H 1.48506 * 109.47197 * 34.67180 * 3 2 1 6 6 H 1.48503 * 109.47543 * 154.67208 * 3 2 1 7 7 C 1.37882 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99590 * 186.00413 * 7 2 1 9 9 C 1.50699 * 120.00478 * 5.99808 * 7 2 1 10 10 H 1.08999 * 110.88342 * 309.06930 * 9 7 2 11 11 C 1.55151 * 111.00805 * 185.17967 * 9 7 2 12 12 C 1.54322 * 102.94371 * 206.38872 * 11 9 7 13 13 N 1.47020 * 107.27190 * 22.19112 * 12 11 9 14 14 C 1.34782 * 125.64999 * 181.02083 * 13 12 11 15 15 O 1.21516 * 119.99736 * 180.02562 * 14 13 12 16 16 C 1.48163 * 119.99604 * 0.02982 * 14 13 12 17 17 C 1.39317 * 119.71920 * 179.97438 * 16 14 13 18 18 C 1.38585 * 119.05629 * 179.97438 * 17 16 14 19 19 C 1.38627 * 118.49008 * 0.02562 * 18 17 16 20 20 C 1.38555 * 119.35455 * 359.97438 * 19 18 17 21 21 N 1.31520 * 120.89890 * 0.02562 * 20 19 18 22 22 C 1.47425 * 108.70271 * 1.29196 * 13 12 11 23 23 H 0.97000 * 120.00321 * 0.02562 * 1 2 3 24 24 H 1.08994 * 110.72156 * 88.02534 * 11 9 7 25 25 H 1.09005 * 110.71661 * 324.75123 * 11 9 7 26 26 H 1.09001 * 109.88340 * 262.77406 * 12 11 9 27 27 H 1.09002 * 110.01351 * 141.68417 * 12 11 9 28 28 H 1.08001 * 120.46933 * 0.02562 * 17 16 14 29 29 H 1.08003 * 120.75565 * 179.72281 * 18 17 16 30 30 H 1.08008 * 120.32061 * 179.97438 * 19 18 17 31 31 H 1.07998 * 119.55167 * 179.97438 * 20 19 18 32 32 H 1.08993 * 110.37118 * 94.48091 * 22 13 12 33 33 H 1.09008 * 110.36587 * 216.80730 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3978 2.1034 -1.3954 5 1 1.4994 2.6221 0.7965 6 1 3.5926 1.4136 0.5989 7 6 2.0044 -1.1941 0.0005 8 1 3.0800 -1.1966 0.0984 9 6 1.2572 -2.4957 -0.1353 10 1 0.4386 -2.5505 0.5824 11 6 2.2154 -3.7060 0.0204 12 6 1.5061 -4.8144 -0.7858 13 7 0.6053 -4.1515 -1.7401 14 6 -0.2088 -4.7749 -2.6149 15 8 -0.9130 -4.1229 -3.3603 16 6 -0.2451 -6.2552 -2.6675 17 6 -1.0892 -6.8936 -3.5736 18 6 -1.1118 -8.2787 -3.6115 19 6 -0.2896 -8.9775 -2.7412 20 6 0.5248 -8.2770 -1.8662 21 7 0.5265 -6.9619 -1.8512 22 6 0.7448 -2.6920 -1.5863 23 1 -0.4850 0.8400 -0.0004 24 1 2.3093 -3.9913 1.0681 25 1 3.1922 -3.4822 -0.4085 26 1 0.9306 -5.4511 -0.1138 27 1 2.2412 -5.4127 -1.3241 28 1 -1.7163 -6.3171 -4.2376 29 1 -1.7589 -8.8019 -4.2999 30 1 -0.2839 -10.0576 -2.7453 31 1 1.1663 -8.8182 -1.1865 32 1 1.4682 -2.3024 -2.3025 33 1 -0.2206 -2.2028 -1.7167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:21 Heat of formation + Delta-G solvation = -14.713074 kcal Electronic energy + Delta-G solvation = -17316.484139 eV Core-core repulsion = 14534.333169 eV Total energy + Delta-G solvation = -2782.150970 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65152 -40.12006 -38.38720 -35.02037 -33.64719 -32.64236 -31.90489 -29.80090 -27.31489 -25.51634 -24.34933 -23.62546 -21.60540 -20.85035 -18.68430 -18.43788 -17.75438 -16.96518 -16.72136 -16.48794 -16.30343 -15.71167 -15.24921 -14.54167 -14.38770 -14.22582 -14.05588 -13.69337 -13.49888 -13.24530 -12.87564 -12.80721 -12.44849 -12.28903 -11.61382 -11.46701 -11.10233 -11.07559 -10.91009 -10.60227 -10.33228 -10.21798 -9.54823 -8.19232 -6.30332 -0.33247 0.30821 1.42154 1.44030 1.54578 1.71792 2.00969 2.42349 2.89956 3.12044 3.13459 3.74430 3.99713 4.03260 4.08854 4.13536 4.30946 4.41324 4.51826 4.60721 4.80602 4.86035 4.93534 5.09104 5.12688 5.18286 5.23426 5.35952 5.45491 5.67538 5.69703 5.82662 6.25632 6.57126 6.76169 6.83504 7.09400 7.39341 8.91243 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.049147 B = 0.005242 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.584753 B = 5339.972731 C = 5753.751860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.039 3.961 10 H 0.014 0.986 11 C -0.124 4.124 12 C 0.132 3.868 13 N -0.599 5.599 14 C 0.557 3.443 15 O -0.592 6.592 16 C 0.056 3.944 17 C -0.126 4.126 18 C -0.077 4.077 19 C -0.132 4.132 20 C 0.087 3.913 21 N -0.474 5.474 22 C 0.125 3.875 23 H 0.262 0.738 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.178 0.822 30 H 0.186 0.814 31 H 0.196 0.804 32 H 0.045 0.955 33 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -20.415 -3.822 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.019 3.981 10 H 0.032 0.968 11 C -0.161 4.161 12 C 0.010 3.990 13 N -0.329 5.329 14 C 0.346 3.654 15 O -0.474 6.474 16 C -0.080 4.080 17 C -0.147 4.147 18 C -0.102 4.102 19 C -0.151 4.151 20 C -0.072 4.072 21 N -0.186 5.186 22 C 0.002 3.998 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.154 0.846 29 H 0.195 0.805 30 H 0.203 0.797 31 H 0.213 0.787 32 H 0.063 0.937 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.820 -19.500 -3.655 19.923 hybrid contribution -0.623 1.152 -0.681 1.476 sum 1.197 -18.349 -4.336 18.892 Atomic orbital electron populations 1.70114 1.07796 1.27705 1.50660 1.25922 0.95544 1.03147 0.94195 0.85500 0.79094 0.78850 0.78002 1.20502 1.21060 1.18171 1.21392 0.93904 0.90916 1.50421 0.91269 1.19791 0.94395 0.93875 0.89989 0.96776 1.22776 0.98744 0.94332 1.00290 1.22103 0.92006 0.94268 0.90586 1.48797 1.39849 1.08666 1.35613 1.18408 0.79440 0.87672 0.79854 1.90699 1.44896 1.67626 1.44186 1.20755 0.98001 0.92069 0.97159 1.22224 0.97736 0.97014 0.97714 1.22044 0.97939 0.91828 0.98424 1.22889 0.94377 1.03792 0.94088 1.23595 0.97465 0.88413 0.97769 1.67761 1.19578 1.10523 1.20779 1.22467 0.98750 0.77983 1.00554 0.92876 0.89635 0.90996 0.90689 0.90023 0.84634 0.80499 0.79708 0.78696 0.93684 0.95069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.92 13.19 21.45 0.28 -55.64 16 2 C 0.01 0.64 5.40 84.66 0.46 1.10 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.53 -28.95 8.45 25.60 0.22 -28.73 16 8 H 0.07 3.60 7.75 -2.91 -0.02 3.58 16 9 C 0.04 2.00 2.78 -10.07 -0.03 1.97 16 10 H 0.01 0.81 8.07 -2.39 -0.02 0.79 16 11 C -0.12 -4.88 6.39 31.78 0.20 -4.67 16 12 C 0.13 4.85 5.40 86.73 0.47 5.32 16 13 N -0.60 -26.98 3.32 -814.38 -2.71 -29.69 16 14 C 0.56 24.66 7.84 86.88 0.68 25.34 16 15 O -0.59 -30.19 16.58 -3.77 -0.06 -30.25 16 16 C 0.06 1.89 6.72 41.91 0.28 2.17 16 17 C -0.13 -3.33 9.63 22.61 0.22 -3.11 16 18 C -0.08 -1.22 10.17 22.45 0.23 -0.99 16 19 C -0.13 -1.63 10.11 22.44 0.23 -1.40 16 20 C 0.09 1.52 11.18 84.82 0.95 2.47 16 21 N -0.47 -13.28 6.85 -184.92 -1.27 -14.54 16 22 C 0.12 6.55 6.26 86.93 0.54 7.09 16 23 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 24 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 25 H 0.07 2.72 7.99 -2.38 -0.02 2.70 16 26 H 0.07 2.60 7.41 -2.39 -0.02 2.58 16 27 H 0.08 2.68 7.53 -2.39 -0.02 2.66 16 28 H 0.14 3.77 7.64 -2.91 -0.02 3.75 16 29 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 31 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.04 2.40 8.04 -2.39 -0.02 2.38 16 33 H 0.03 1.86 8.04 -2.38 -0.02 1.84 16 Total: -1.00 -74.46 284.23 3.82 -70.64 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.10 Total: 6.97 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 4.44 Total: 6.56 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -3.69 Total: -99.87 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.06 Total: -30.25 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -74.46 3.82 -70.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.930 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds