Wall clock time and date at job start Mon Mar 30 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30977 * 126.44563 * 2 1 4 4 C 1.35195 * 105.57632 * 179.97438 * 3 2 1 5 5 C 1.48552 * 126.40097 * 179.97438 * 4 3 2 6 6 N 1.32505 * 119.20825 * 359.72941 * 5 4 3 7 7 C 1.32181 * 120.75452 * 179.76058 * 6 5 4 8 8 C 1.38712 * 119.17968 * 0.50582 * 7 6 5 9 9 C 1.50700 * 120.72814 * 179.76853 * 8 7 6 10 10 C 1.50693 * 109.47297 * 269.98194 * 9 8 7 11 11 H 1.08003 * 120.00620 * 0.02562 * 10 9 8 12 12 C 1.37885 * 120.00196 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00291 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99613 * 0.02562 * 12 10 9 15 15 H 1.48491 * 109.47223 * 89.99662 * 14 12 10 16 16 H 1.48497 * 109.46643 * 209.99710 * 14 12 10 17 17 H 1.48499 * 109.46941 * 329.99389 * 14 12 10 18 18 C 1.38703 * 118.53766 * 359.75252 * 8 7 6 19 19 N 1.32179 * 119.18745 * 359.97438 * 18 8 7 20 20 N 1.30679 * 107.18945 * 0.02562 * 4 3 2 21 21 O 1.21286 * 110.11361 * 359.97438 * 20 4 3 22 22 H 1.08997 * 109.47644 * 89.99268 * 1 2 3 23 23 H 1.09005 * 109.46674 * 209.99210 * 1 2 3 24 24 H 1.09002 * 109.47256 * 329.98816 * 1 2 3 25 25 H 1.08001 * 120.40783 * 180.23499 * 7 6 5 26 26 H 1.09007 * 109.46993 * 29.97865 * 9 8 7 27 27 H 1.09002 * 109.47004 * 149.97671 * 9 8 7 28 28 H 0.97000 * 120.00169 * 180.02562 * 13 12 10 29 29 H 1.08010 * 120.40523 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2851 1.0536 0.0000 4 6 3.5483 0.5720 0.0006 5 6 4.7980 1.3752 0.0003 6 7 4.7166 2.6977 -0.0061 7 6 5.8088 3.4421 -0.0018 8 6 7.0497 2.8223 -0.0012 9 6 8.3175 3.6371 -0.0016 10 6 8.7405 3.9073 -1.4224 11 1 8.1503 3.5274 -2.2433 12 6 9.8807 4.6404 -1.6748 13 7 10.2502 4.8758 -2.9147 14 14 10.9014 5.2981 -0.2551 15 1 11.9291 4.2949 0.1221 16 1 11.5685 6.5590 -0.6677 17 1 10.0179 5.5633 0.9086 18 6 7.0980 1.4361 0.0002 19 7 5.9672 0.7517 0.0013 20 7 3.4644 -0.7321 0.0003 21 8 2.3011 -1.0752 0.0002 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5137 24 1 -0.3634 0.8899 0.5140 25 1 5.7360 4.5197 -0.0032 26 1 8.1417 4.5828 0.5112 27 1 9.1041 3.0853 0.5131 28 1 11.0525 5.3912 -3.0922 29 1 8.0480 0.9222 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259729528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:41 Heat of formation + Delta-G solvation = 115.324283 kcal Electronic energy + Delta-G solvation = -16352.411017 eV Core-core repulsion = 13472.358547 eV Total energy + Delta-G solvation = -2880.052470 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.63388 -40.64550 -36.05201 -34.42660 -33.53183 -33.33415 -31.98168 -29.11961 -28.43744 -25.31710 -24.36851 -23.37687 -22.08008 -20.93019 -18.27585 -18.16196 -17.15861 -16.99361 -16.47821 -14.83797 -14.70445 -14.54716 -13.92580 -13.71324 -13.67619 -13.23725 -13.12328 -12.51619 -12.23127 -12.02338 -11.91881 -11.45849 -11.11635 -10.75927 -10.50043 -10.49253 -10.13691 -10.08495 -9.60472 -8.91321 -8.72832 -8.51601 -6.23590 -4.26628 0.68886 1.31110 1.46080 2.42111 2.71140 3.09296 3.18273 3.27076 3.27338 3.70503 4.18386 4.26458 4.46450 4.86748 4.97907 5.00299 5.06560 5.08555 5.17448 5.35471 5.47807 5.59009 5.71810 5.96864 6.26470 6.63073 6.78388 6.95752 7.28490 7.44396 8.06457 8.27315 8.32600 8.78086 9.33847 10.88664 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.060880 B = 0.004276 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.806997 B = 6546.562631 C = 6617.309409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.166 3.834 3 N -0.447 5.447 4 C 0.241 3.759 5 C 0.345 3.655 6 N -0.478 5.478 7 C 0.139 3.861 8 C -0.106 4.106 9 C 0.022 3.978 10 C -0.525 4.525 11 H 0.074 0.926 12 C 0.074 3.926 13 N -0.892 5.892 14 Si 0.879 3.121 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.264 1.264 18 C 0.139 3.861 19 N -0.488 5.488 20 N -0.343 5.343 21 O 0.085 5.915 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.176 0.824 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.267 0.733 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 -7.720 7.680 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.055 4.055 3 N -0.181 5.181 4 C -0.031 4.031 5 C 0.078 3.922 6 N -0.192 5.192 7 C -0.027 4.027 8 C -0.111 4.111 9 C -0.017 4.017 10 C -0.563 4.563 11 H 0.092 0.908 12 C -0.129 4.129 13 N -0.529 5.529 14 Si 0.706 3.294 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.188 1.188 18 C -0.027 4.027 19 N -0.203 5.203 20 N -0.047 5.047 21 O 0.020 5.980 22 H 0.120 0.880 23 H 0.116 0.884 24 H 0.123 0.877 25 H 0.193 0.807 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.725 -8.254 7.552 19.299 hybrid contribution 1.389 0.896 0.440 1.711 sum -14.336 -7.358 7.992 17.988 Atomic orbital electron populations 1.20378 0.79985 1.05838 1.05456 1.28914 0.99063 0.80581 0.96963 1.72083 0.99289 1.28002 1.18708 1.22598 0.91124 0.86569 1.02788 1.18653 0.87338 0.86447 0.99794 1.68097 1.33859 1.05494 1.11765 1.23206 0.86377 1.00777 0.92333 1.22302 0.99243 0.96299 0.93288 1.18774 0.88883 0.94661 0.99348 1.20801 1.10372 1.35371 0.89745 0.90834 1.24977 0.96984 0.95240 0.95677 1.69881 1.24888 1.39309 1.18818 0.86784 0.80797 0.78947 0.82880 1.19958 1.21021 1.18810 1.23163 0.95850 0.91227 0.92432 1.68072 0.98136 1.41706 1.12389 1.75018 0.96410 1.14599 1.18679 1.85336 1.11418 1.35922 1.65331 0.88040 0.88424 0.87666 0.80705 0.94312 0.94778 0.92265 0.80752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.00 0.38 0.09 15 2 C 0.17 1.89 8.50 -13.00 -0.11 1.78 15 3 N -0.45 -7.13 11.55 -9.90 -0.11 -7.24 15 4 C 0.24 4.42 7.99 -156.15 -1.25 3.17 15 5 C 0.35 6.93 7.60 -156.99 -1.19 5.74 15 6 N -0.48 -9.48 10.34 -11.10 -0.11 -9.59 15 7 C 0.14 2.63 11.00 -17.23 -0.19 2.44 15 8 C -0.11 -2.10 5.11 -104.27 -0.53 -2.63 15 9 C 0.02 0.47 4.22 -29.04 -0.12 0.34 15 10 C -0.53 -13.89 9.65 -34.44 -0.33 -14.23 15 11 H 0.07 2.17 7.98 -52.48 -0.42 1.75 15 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 13 N -0.89 -26.14 13.96 55.43 0.77 -25.37 15 14 Si 0.88 19.98 27.47 -169.99 -4.67 15.31 15 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 17 H -0.26 -5.64 6.54 56.52 0.37 -5.27 15 18 C 0.14 2.64 11.00 -17.23 -0.19 2.46 15 19 N -0.49 -9.78 10.33 -11.10 -0.11 -9.89 15 20 N -0.34 -5.85 12.16 30.95 0.38 -5.47 15 21 O 0.09 1.13 11.29 18.03 0.20 1.33 15 22 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 15 23 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 15 24 H 0.10 0.45 8.14 -51.93 -0.42 0.03 15 25 H 0.18 2.87 8.06 -52.49 -0.42 2.45 15 26 H 0.04 0.80 7.16 -51.93 -0.37 0.43 15 27 H 0.03 0.70 7.53 -51.93 -0.39 0.31 15 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 29 H 0.18 2.89 8.06 -52.48 -0.42 2.47 15 LS Contribution 270.43 15.07 4.08 4.08 Total: -1.00 -33.02 270.43 -5.68 -38.70 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -2.46 Total: -2.94 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -3.64 Total: 1.09 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.81 Total: -57.57 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.02 -5.68 -38.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.028 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds