Wall clock time and date at job start Mon Mar 30 2020 03:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30977 * 126.44563 * 2 1 4 4 C 1.35195 * 105.57632 * 179.97438 * 3 2 1 5 5 C 1.48552 * 126.40097 * 179.97438 * 4 3 2 6 6 N 1.32505 * 119.20825 * 359.72941 * 5 4 3 7 7 C 1.32181 * 120.75452 * 179.76058 * 6 5 4 8 8 C 1.38712 * 119.17968 * 0.50582 * 7 6 5 9 9 C 1.50700 * 120.72814 * 179.76853 * 8 7 6 10 10 C 1.50693 * 109.47297 * 269.98194 * 9 8 7 11 11 H 1.08003 * 120.00620 * 0.02562 * 10 9 8 12 12 C 1.37885 * 120.00196 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00291 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99613 * 0.02562 * 12 10 9 15 15 H 1.48491 * 109.47223 * 89.99662 * 14 12 10 16 16 H 1.48497 * 109.46643 * 209.99710 * 14 12 10 17 17 H 1.48499 * 109.46941 * 329.99389 * 14 12 10 18 18 C 1.38703 * 118.53766 * 359.75252 * 8 7 6 19 19 N 1.32179 * 119.18745 * 359.97438 * 18 8 7 20 20 N 1.30679 * 107.18945 * 0.02562 * 4 3 2 21 21 O 1.21286 * 110.11361 * 359.97438 * 20 4 3 22 22 H 1.08997 * 109.47644 * 89.99268 * 1 2 3 23 23 H 1.09005 * 109.46674 * 209.99210 * 1 2 3 24 24 H 1.09002 * 109.47256 * 329.98816 * 1 2 3 25 25 H 1.08001 * 120.40783 * 180.23499 * 7 6 5 26 26 H 1.09007 * 109.46993 * 29.97865 * 9 8 7 27 27 H 1.09002 * 109.47004 * 149.97671 * 9 8 7 28 28 H 0.97000 * 120.00169 * 180.02562 * 13 12 10 29 29 H 1.08010 * 120.40523 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2851 1.0536 0.0000 4 6 3.5483 0.5720 0.0006 5 6 4.7980 1.3752 0.0003 6 7 4.7166 2.6977 -0.0061 7 6 5.8088 3.4421 -0.0018 8 6 7.0497 2.8223 -0.0012 9 6 8.3175 3.6371 -0.0016 10 6 8.7405 3.9073 -1.4224 11 1 8.1503 3.5274 -2.2433 12 6 9.8807 4.6404 -1.6748 13 7 10.2502 4.8758 -2.9147 14 14 10.9014 5.2981 -0.2551 15 1 11.9291 4.2949 0.1221 16 1 11.5685 6.5590 -0.6677 17 1 10.0179 5.5633 0.9086 18 6 7.0980 1.4361 0.0002 19 7 5.9672 0.7517 0.0013 20 7 3.4644 -0.7321 0.0003 21 8 2.3011 -1.0752 0.0002 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5137 24 1 -0.3634 0.8899 0.5140 25 1 5.7360 4.5197 -0.0032 26 1 8.1417 4.5828 0.5112 27 1 9.1041 3.0853 0.5131 28 1 11.0525 5.3912 -3.0922 29 1 8.0480 0.9222 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259729528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:40 Heat of formation + Delta-G solvation = 90.587730 kcal Electronic energy + Delta-G solvation = -16353.483675 eV Core-core repulsion = 13472.358547 eV Total energy + Delta-G solvation = -2881.125128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.80323 -42.14332 -37.24175 -35.99391 -34.98588 -34.67504 -33.72530 -30.30749 -29.68440 -26.89066 -25.80728 -24.79488 -23.46181 -22.41652 -19.43982 -19.39153 -19.02669 -18.62105 -17.76634 -16.58949 -16.10889 -15.72309 -15.42128 -15.13809 -14.57858 -14.41836 -14.17769 -14.02698 -13.74519 -13.42137 -12.99799 -12.92868 -12.48341 -12.27730 -12.13387 -12.01809 -11.77909 -11.63562 -11.24051 -10.81453 -10.39407 -10.05754 -8.30999 -6.39486 -0.71537 -0.03146 0.24288 1.13481 1.42572 1.44086 1.54929 1.73705 1.92603 2.36188 2.51700 2.67690 3.04090 3.30353 3.53953 3.62645 3.87911 3.95639 4.14846 4.36022 4.59513 4.71118 4.79037 4.92610 4.98585 5.17138 5.21867 5.29509 5.50362 5.77736 6.18254 6.66641 6.75885 7.04116 7.24888 8.85173 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.060880 B = 0.004276 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.806997 B = 6546.562631 C = 6617.309409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.482 5.482 4 C 0.209 3.791 5 C 0.339 3.661 6 N -0.490 5.490 7 C 0.141 3.859 8 C -0.123 4.123 9 C 0.030 3.970 10 C -0.527 4.527 11 H 0.024 0.976 12 C 0.011 3.989 13 N -0.947 5.947 14 Si 0.953 3.047 15 H -0.265 1.265 16 H -0.288 1.288 17 H -0.235 1.235 18 C 0.140 3.860 19 N -0.504 5.504 20 N -0.362 5.362 21 O 0.101 5.899 22 H 0.125 0.875 23 H 0.131 0.869 24 H 0.116 0.884 25 H 0.197 0.803 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.269 0.731 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 -8.047 9.620 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.029 4.029 3 N -0.215 5.215 4 C -0.062 4.062 5 C 0.072 3.928 6 N -0.205 5.205 7 C -0.025 4.025 8 C -0.128 4.128 9 C -0.009 4.009 10 C -0.565 4.565 11 H 0.043 0.957 12 C -0.186 4.186 13 N -0.587 5.587 14 Si 0.775 3.225 15 H -0.190 1.190 16 H -0.214 1.214 17 H -0.158 1.158 18 C -0.026 4.026 19 N -0.219 5.219 20 N -0.065 5.065 21 O 0.032 5.968 22 H 0.144 0.856 23 H 0.150 0.850 24 H 0.135 0.865 25 H 0.214 0.786 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.098 -8.578 9.509 21.362 hybrid contribution 1.582 0.875 -0.245 1.825 sum -15.516 -7.702 9.264 19.644 Atomic orbital electron populations 1.20880 0.75105 1.08032 1.07538 1.30145 1.00765 0.78823 0.93187 1.72062 0.98832 1.29769 1.20836 1.22599 0.91521 0.87066 1.05041 1.19118 0.88185 0.86874 0.98657 1.68181 1.34063 1.05623 1.12641 1.23589 0.86046 1.01792 0.91038 1.22193 0.98929 0.96518 0.95118 1.18635 0.90033 0.95937 0.96259 1.21013 1.09691 1.34586 0.91233 0.95747 1.25986 0.98471 0.95585 0.98598 1.70052 1.25902 1.40977 1.21725 0.85621 0.79177 0.77956 0.79708 1.18983 1.21423 1.15764 1.23526 0.96491 0.91291 0.91243 1.68157 0.98465 1.41928 1.13378 1.74990 0.98312 1.14298 1.18864 1.85295 1.10621 1.36160 1.64724 0.85647 0.85020 0.86540 0.78605 0.92660 0.92931 0.92234 0.78790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 71.24 0.75 0.40 15 2 C 0.19 3.94 8.50 88.36 0.75 4.69 15 3 N -0.48 -14.97 11.55 -302.65 -3.50 -18.46 15 4 C 0.21 7.66 7.99 137.37 1.10 8.76 15 5 C 0.34 13.75 7.60 137.66 1.05 14.79 15 6 N -0.49 -19.50 10.34 -189.04 -1.95 -21.46 15 7 C 0.14 5.27 11.00 84.75 0.93 6.20 15 8 C -0.12 -4.78 5.11 -19.64 -0.10 -4.88 15 9 C 0.03 1.23 4.22 29.10 0.12 1.36 15 10 C -0.53 -28.25 9.65 25.60 0.25 -28.00 15 11 H 0.02 1.50 7.98 -2.91 -0.02 1.47 15 12 C 0.01 0.63 5.47 84.66 0.46 1.09 15 13 N -0.95 -57.04 13.96 21.45 0.30 -56.74 15 14 Si 0.95 40.29 27.47 68.60 1.88 42.18 15 15 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 16 H -0.29 -12.29 7.11 99.48 0.71 -11.58 15 17 H -0.23 -8.78 6.54 99.48 0.65 -8.13 15 18 C 0.14 5.28 11.00 84.75 0.93 6.22 15 19 N -0.50 -20.33 10.33 -189.04 -1.95 -22.28 15 20 N -0.36 -12.21 12.16 -59.29 -0.72 -12.93 15 21 O 0.10 2.51 11.29 74.60 0.84 3.35 15 22 H 0.13 0.31 8.14 -2.39 -0.02 0.29 15 23 H 0.13 -0.01 8.14 -2.38 -0.02 -0.03 15 24 H 0.12 0.56 8.14 -2.39 -0.02 0.54 15 25 H 0.20 6.24 8.06 -2.91 -0.02 6.22 15 26 H 0.06 2.13 7.16 -2.38 -0.02 2.11 15 27 H 0.05 2.01 7.53 -2.39 -0.02 1.99 15 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 29 H 0.20 6.30 8.06 -2.91 -0.02 6.28 15 Total: -1.00 -74.57 270.43 2.27 -72.30 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.13 Total: 3.41 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.24 Total: 10.63 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -7.83 Total: -131.87 kcal Atomic # 8 Polarization: 2.51 SS G_CDS: 0.84 Total: 3.35 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.88 Total: 42.18 kcal Total: -74.57 2.27 -72.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.888 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds