Wall clock time and date at job start Mon Mar 30 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34060 * 126.24783 * 2 1 4 4 C 1.30403 * 108.91740 * 180.02562 * 3 2 1 5 5 O 1.33927 * 109.05519 * 359.76910 * 4 3 2 6 6 C 1.35152 * 107.70887 * 0.37020 * 5 4 3 7 7 C 1.47686 * 126.59844 * 179.89667 * 6 5 4 8 8 C 1.40151 * 120.56822 * 359.40944 * 7 6 5 9 9 N 1.32199 * 118.58715 * 179.76807 * 8 7 6 10 10 C 1.32188 * 119.64988 * 0.50918 * 9 8 7 11 11 C 1.50698 * 119.41550 * 179.71109 * 10 9 8 12 12 C 1.50693 * 109.47182 * 270.02171 * 11 10 9 13 13 H 1.08001 * 120.00487 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00058 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00111 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00222 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46828 * 89.99813 * 16 14 12 18 18 H 1.48490 * 109.47387 * 210.00196 * 16 14 12 19 19 H 1.48501 * 109.47058 * 330.00519 * 16 14 12 20 20 N 1.31966 * 121.16899 * 359.73404 * 10 9 8 21 21 N 1.28745 * 121.51357 * 359.97438 * 20 10 9 22 22 H 1.09001 * 109.47376 * 269.97515 * 1 2 3 23 23 H 1.09000 * 109.47177 * 29.97826 * 1 2 3 24 24 H 1.09001 * 109.47460 * 149.97933 * 1 2 3 25 25 H 1.08008 * 125.47226 * 180.02562 * 4 3 2 26 26 H 1.07996 * 120.70199 * 0.02562 * 8 7 6 27 27 H 1.09004 * 109.46942 * 30.02334 * 11 10 9 28 28 H 1.09003 * 109.47018 * 150.02061 * 11 10 9 29 29 H 0.97005 * 119.99943 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2996 1.0811 0.0000 4 6 3.5444 0.6927 -0.0006 5 8 3.5848 -0.6460 0.0042 6 6 2.3103 -1.0956 -0.0005 7 6 1.8744 -2.5067 0.0000 8 6 2.8171 -3.5439 -0.0067 9 7 2.3835 -4.7927 -0.0013 10 6 1.0838 -5.0338 0.0000 11 6 0.5954 -6.4594 -0.0005 12 6 0.4316 -6.9339 -1.4214 13 1 0.6589 -6.2697 -2.2421 14 6 -0.0073 -8.2163 -1.6737 15 7 -0.2836 -9.0253 -0.6744 16 14 -0.2111 -8.8042 -3.4351 17 1 1.0598 -9.4130 -3.9038 18 1 -1.2968 -9.8153 -3.4970 19 1 -0.5579 -7.6515 -4.3047 20 7 0.2064 -4.0481 0.0011 21 7 0.5787 -2.8157 0.0016 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5141 25 1 4.4048 1.3457 -0.0003 26 1 3.8751 -3.3273 -0.0118 27 1 1.3200 -7.0918 0.5126 28 1 -0.3639 -6.5150 0.5141 29 1 -0.5928 -9.9275 -0.8519 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259740575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:52 Heat of formation + Delta-G solvation = 91.907277 kcal Electronic energy + Delta-G solvation = -16597.763203 eV Core-core repulsion = 13716.695295 eV Total energy + Delta-G solvation = -2881.067908 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.51559 -41.33139 -35.51386 -34.87519 -34.14070 -32.96072 -31.08742 -28.94656 -27.28884 -25.31798 -24.81951 -22.84388 -21.86473 -21.28855 -18.33272 -17.77720 -16.94836 -16.65354 -16.14730 -15.83995 -15.01665 -14.61903 -14.53986 -13.26626 -13.08343 -13.00529 -12.46033 -12.35245 -11.87463 -11.59243 -11.41853 -11.32251 -11.17495 -10.92693 -10.79982 -10.70473 -10.49523 -10.02026 -9.48478 -8.92568 -8.55849 -8.40052 -6.20002 -4.24725 0.35552 0.90388 1.72644 2.24817 2.52514 3.25003 3.30978 3.35059 3.86964 3.88539 4.04788 4.16152 4.25159 4.36546 4.66826 4.74296 5.11519 5.19458 5.36920 5.53125 5.70022 5.75486 5.86216 5.96278 6.31071 6.38997 7.10711 7.25210 7.41650 7.49111 7.71608 8.00584 8.74166 8.82202 9.38621 10.90612 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043225 B = 0.004780 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.624567 B = 5856.914113 C = 5951.421514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.044 3.956 3 N -0.488 5.488 4 C 0.184 3.816 5 O -0.197 6.197 6 C -0.001 4.001 7 C 0.051 3.949 8 C 0.140 3.860 9 N -0.457 5.457 10 C 0.306 3.694 11 C 0.079 3.921 12 C -0.514 4.514 13 H 0.055 0.945 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.273 1.273 20 N -0.266 5.266 21 N -0.170 5.170 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.255 0.745 26 H 0.180 0.820 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 15.894 2.034 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 N -0.217 5.217 4 C -0.041 4.041 5 O -0.082 6.082 6 C -0.056 4.056 7 C -0.096 4.096 8 C -0.038 4.038 9 N -0.176 5.176 10 C 0.042 3.958 11 C 0.040 3.960 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.198 1.198 20 N -0.114 5.114 21 N -0.023 5.023 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.271 0.729 26 H 0.197 0.803 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.761 15.960 2.097 17.097 hybrid contribution 1.358 -0.630 -0.952 1.775 sum 7.119 15.329 1.145 16.941 Atomic orbital electron populations 1.20356 0.85347 1.04304 1.03538 1.21958 0.98409 0.86375 1.01081 1.70320 1.01357 1.31667 1.18359 1.28157 0.97694 0.78838 0.99453 1.84408 1.29014 1.24706 1.70106 1.19973 0.81195 0.92727 1.11703 1.20278 0.94487 0.90257 1.04592 1.24228 1.01516 0.88251 0.89818 1.69168 1.17871 1.20368 1.10206 1.26111 0.85165 1.00664 0.83887 1.18388 0.98126 0.79889 0.99630 1.20714 1.46468 0.98203 0.89938 0.92646 1.24919 0.94753 0.96248 0.97845 1.69928 1.44374 1.07380 1.30877 0.86396 0.77976 0.78626 0.83911 1.20386 1.20820 1.19773 1.73847 1.31212 0.94029 1.12278 1.73883 1.12044 1.12533 1.03833 0.90293 0.90851 0.88357 0.72934 0.80339 0.92591 0.92463 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.83 36.00 0.35 -0.63 15 2 C 0.04 0.62 7.15 -82.47 -0.59 0.03 15 3 N -0.49 -6.13 11.27 -10.90 -0.12 -6.25 15 4 C 0.18 1.72 13.21 52.16 0.69 2.41 15 5 O -0.20 -2.31 10.66 4.32 0.05 -2.26 15 6 C 0.00 -0.02 7.10 -36.58 -0.26 -0.28 15 7 C 0.05 0.84 6.84 -82.70 -0.57 0.28 15 8 C 0.14 2.29 11.03 -16.68 -0.18 2.11 15 9 N -0.46 -9.28 10.43 -10.25 -0.11 -9.38 15 10 C 0.31 6.87 6.90 -156.71 -1.08 5.79 15 11 C 0.08 2.01 5.43 -29.04 -0.16 1.85 15 12 C -0.51 -14.17 9.09 -34.44 -0.31 -14.48 15 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 14 C 0.07 1.80 5.46 -17.82 -0.10 1.70 15 15 N -0.89 -25.27 13.29 55.43 0.74 -24.53 15 16 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 15 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 20 N -0.27 -5.76 11.46 32.44 0.37 -5.38 15 21 N -0.17 -3.20 9.08 33.37 0.30 -2.90 15 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.10 1.37 6.25 -51.93 -0.32 1.05 15 25 H 0.26 0.86 8.06 -52.48 -0.42 0.43 15 26 H 0.18 2.19 8.02 -52.49 -0.42 1.77 15 27 H 0.06 1.46 8.14 -51.93 -0.42 1.04 15 28 H 0.06 1.50 8.14 -51.93 -0.42 1.08 15 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 LS Contribution 270.05 15.07 4.07 4.07 Total: -1.00 -31.29 270.05 -4.33 -35.61 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -2.40 Total: -3.89 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.21 Total: -1.23 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 1.18 Total: -48.45 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.05 Total: -2.26 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.29 -4.33 -35.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.521 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds