Wall clock time and date at job start Mon Mar 30 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34060 * 126.24783 * 2 1 4 4 C 1.30403 * 108.91740 * 180.02562 * 3 2 1 5 5 O 1.33927 * 109.05519 * 359.76910 * 4 3 2 6 6 C 1.35152 * 107.70887 * 0.37020 * 5 4 3 7 7 C 1.47686 * 126.59844 * 179.89667 * 6 5 4 8 8 C 1.40151 * 120.56822 * 359.40944 * 7 6 5 9 9 N 1.32199 * 118.58715 * 179.76807 * 8 7 6 10 10 C 1.32188 * 119.64988 * 0.50918 * 9 8 7 11 11 C 1.50698 * 119.41550 * 179.71109 * 10 9 8 12 12 C 1.50693 * 109.47182 * 270.02171 * 11 10 9 13 13 H 1.08001 * 120.00487 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00058 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00111 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00222 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46828 * 89.99813 * 16 14 12 18 18 H 1.48490 * 109.47387 * 210.00196 * 16 14 12 19 19 H 1.48501 * 109.47058 * 330.00519 * 16 14 12 20 20 N 1.31966 * 121.16899 * 359.73404 * 10 9 8 21 21 N 1.28745 * 121.51357 * 359.97438 * 20 10 9 22 22 H 1.09001 * 109.47376 * 269.97515 * 1 2 3 23 23 H 1.09000 * 109.47177 * 29.97826 * 1 2 3 24 24 H 1.09001 * 109.47460 * 149.97933 * 1 2 3 25 25 H 1.08008 * 125.47226 * 180.02562 * 4 3 2 26 26 H 1.07996 * 120.70199 * 0.02562 * 8 7 6 27 27 H 1.09004 * 109.46942 * 30.02334 * 11 10 9 28 28 H 1.09003 * 109.47018 * 150.02061 * 11 10 9 29 29 H 0.97005 * 119.99943 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2996 1.0811 0.0000 4 6 3.5444 0.6927 -0.0006 5 8 3.5848 -0.6460 0.0042 6 6 2.3103 -1.0956 -0.0005 7 6 1.8744 -2.5067 0.0000 8 6 2.8171 -3.5439 -0.0067 9 7 2.3835 -4.7927 -0.0013 10 6 1.0838 -5.0338 0.0000 11 6 0.5954 -6.4594 -0.0005 12 6 0.4316 -6.9339 -1.4214 13 1 0.6589 -6.2697 -2.2421 14 6 -0.0073 -8.2163 -1.6737 15 7 -0.2836 -9.0253 -0.6744 16 14 -0.2111 -8.8042 -3.4351 17 1 1.0598 -9.4130 -3.9038 18 1 -1.2968 -9.8153 -3.4970 19 1 -0.5579 -7.6515 -4.3047 20 7 0.2064 -4.0481 0.0011 21 7 0.5787 -2.8157 0.0016 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5141 25 1 4.4048 1.3457 -0.0003 26 1 3.8751 -3.3273 -0.0118 27 1 1.3200 -7.0918 0.5126 28 1 -0.3639 -6.5150 0.5141 29 1 -0.5928 -9.9275 -0.8519 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259740575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:52 Heat of formation + Delta-G solvation = 68.237180 kcal Electronic energy + Delta-G solvation = -16598.789615 eV Core-core repulsion = 13716.695295 eV Total energy + Delta-G solvation = -2882.094320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.46114 -42.81131 -36.72090 -36.21174 -35.70081 -34.72219 -32.42299 -30.52195 -28.57842 -26.76438 -26.39645 -24.30159 -23.16425 -22.35632 -19.77216 -18.84963 -18.74490 -17.89422 -17.56090 -16.94067 -16.59103 -16.36093 -15.53292 -14.70338 -14.39383 -14.25092 -14.06128 -13.80747 -13.53327 -13.25468 -12.90930 -12.82598 -12.64456 -12.54300 -12.20176 -12.01785 -11.99523 -11.72663 -11.33486 -10.68459 -10.39365 -9.57499 -8.29356 -6.42169 -0.93662 -0.52860 0.61175 1.23898 1.39848 1.41092 1.52011 1.56653 2.30098 2.46174 2.62184 2.68739 2.95180 3.05709 3.21422 3.49243 3.67954 3.87146 4.13162 4.47101 4.60682 4.71995 4.74499 4.88032 5.09715 5.15132 5.23140 5.37462 5.58740 5.83500 5.94722 6.54667 6.62140 7.25022 7.31076 8.81890 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043225 B = 0.004780 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.624567 B = 5856.914113 C = 5951.421514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.052 3.948 3 N -0.521 5.521 4 C 0.227 3.773 5 O -0.194 6.194 6 C -0.035 4.035 7 C 0.072 3.928 8 C 0.151 3.849 9 N -0.476 5.476 10 C 0.285 3.715 11 C 0.090 3.910 12 C -0.533 4.533 13 H 0.047 0.953 14 C 0.017 3.983 15 N -0.919 5.919 16 Si 0.970 3.030 17 H -0.268 1.268 18 H -0.273 1.273 19 H -0.272 1.272 20 N -0.291 5.291 21 N -0.186 5.186 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.314 0.686 26 H 0.226 0.774 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 18.206 1.204 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 N -0.249 5.249 4 C 0.002 3.998 5 O -0.080 6.080 6 C -0.090 4.090 7 C -0.076 4.076 8 C -0.027 4.027 9 N -0.195 5.195 10 C 0.019 3.981 11 C 0.050 3.950 12 C -0.571 4.571 13 H 0.065 0.935 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.794 3.206 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.196 1.196 20 N -0.138 5.138 21 N -0.036 5.036 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.328 0.672 26 H 0.242 0.758 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.698 18.280 1.274 19.875 hybrid contribution 0.915 -0.999 -0.641 1.499 sum 8.613 17.281 0.633 19.319 Atomic orbital electron populations 1.20369 0.85256 1.04178 1.03910 1.22194 0.98930 0.86870 0.99092 1.70396 1.02604 1.31236 1.20706 1.29607 0.98328 0.78199 0.93659 1.84428 1.27453 1.25825 1.70315 1.19554 0.82527 0.91436 1.15464 1.20600 0.93689 0.91945 1.01401 1.24942 1.03434 0.86600 0.87735 1.69067 1.16748 1.22580 1.11088 1.25368 0.86362 0.99549 0.86785 1.17974 0.96603 0.82068 0.98363 1.20952 1.46801 0.98591 0.90796 0.93517 1.25792 0.94170 0.96254 1.02137 1.70030 1.44892 1.07819 1.32999 0.85375 0.78425 0.78132 0.78680 1.19343 1.19828 1.19626 1.73751 1.31789 0.94885 1.13327 1.73824 1.13567 1.10973 1.05261 0.89619 0.89334 0.90061 0.67159 0.75792 0.94406 0.94675 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.93 9.83 71.23 0.70 -1.23 15 2 C 0.05 1.32 7.15 41.66 0.30 1.62 15 3 N -0.52 -11.18 11.27 -303.15 -3.42 -14.60 15 4 C 0.23 3.06 13.21 130.45 1.72 4.78 15 5 O -0.19 -3.73 10.66 -7.47 -0.08 -3.81 15 6 C -0.04 -0.92 7.10 24.22 0.17 -0.75 15 7 C 0.07 2.32 6.84 41.90 0.29 2.60 15 8 C 0.15 4.74 11.03 85.10 0.94 5.67 15 9 N -0.48 -19.48 10.43 -186.34 -1.94 -21.42 15 10 C 0.29 13.34 6.90 138.58 0.96 14.29 15 11 C 0.09 4.80 5.43 29.10 0.16 4.96 15 12 C -0.53 -30.41 9.09 25.60 0.23 -30.18 15 13 H 0.05 2.68 7.74 -2.91 -0.02 2.65 15 14 C 0.02 0.93 5.46 84.65 0.46 1.39 15 15 N -0.92 -53.65 13.29 21.45 0.28 -53.36 15 16 Si 0.97 43.79 29.54 68.60 2.03 45.81 15 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 15 20 N -0.29 -13.13 11.46 -51.28 -0.59 -13.71 15 21 N -0.19 -7.10 9.08 -48.35 -0.44 -7.54 15 22 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 23 H 0.09 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.08 2.27 6.25 -2.39 -0.01 2.25 15 25 H 0.31 -0.13 8.06 -2.91 -0.02 -0.15 15 26 H 0.23 4.72 8.02 -2.91 -0.02 4.69 15 27 H 0.04 2.10 8.14 -2.39 -0.02 2.08 15 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 15 29 H 0.27 14.74 8.31 -92.70 -0.77 13.97 15 Total: -1.00 -70.68 270.05 2.96 -67.72 By element: Atomic # 1 Polarization: -3.44 SS G_CDS: 1.19 Total: -2.25 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.93 Total: 3.16 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -6.10 Total: -110.64 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.08 Total: -3.81 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -70.68 2.96 -67.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.957 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds