Wall clock time and date at job start Mon Mar 30 2020 04:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.31906 * 118.79897 * 269.72883 * 10 9 7 12 12 C 1.32380 * 121.17562 * 179.04884 * 11 10 9 13 13 C 1.39862 * 118.19630 * 0.34954 * 12 11 10 14 14 C 1.39610 * 118.56407 * 0.86614 * 13 12 11 15 15 N 1.31740 * 119.38307 * 358.72242 * 14 13 12 16 16 C 1.51730 * 119.66899 * 177.44731 * 14 13 12 17 17 C 1.52538 * 109.11262 * 68.76299 * 16 14 13 18 18 C 1.52070 * 111.50440 * 272.74527 * 17 16 14 19 19 C 1.50755 * 114.34565 * 71.81201 * 18 17 16 20 20 C 1.47038 * 121.48338 * 181.79361 * 13 12 11 21 21 O 1.21254 * 121.32249 * 293.27764 * 20 13 12 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 24 24 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 25 25 H 1.07998 * 120.89936 * 180.12187 * 12 11 10 26 26 H 1.09000 * 109.52895 * 188.65880 * 16 14 13 27 27 H 1.09003 * 109.52938 * 308.87012 * 16 14 13 28 28 H 1.08999 * 109.07168 * 33.26768 * 17 16 14 29 29 H 1.09002 * 109.07196 * 152.22004 * 17 16 14 30 30 H 1.08998 * 108.50817 * 193.07149 * 18 17 16 31 31 H 1.08996 * 108.50661 * 310.55088 * 18 17 16 32 32 H 1.09000 * 109.38229 * 55.55878 * 19 18 17 33 33 H 1.08999 * 109.37795 * 175.33781 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.6346 -4.1287 -1.1706 12 6 3.5078 -5.1218 -1.2312 13 6 3.9885 -5.6533 -0.0301 14 6 3.5121 -5.1255 1.1714 15 7 2.6484 -4.1311 1.1432 16 6 3.9723 -5.7220 2.4885 17 6 5.4494 -5.4009 2.6932 18 6 6.3423 -6.4469 2.0441 19 6 6.3637 -6.3973 0.5376 20 6 4.9890 -6.7307 -0.0131 21 8 4.7264 -7.8413 -0.4227 22 1 -0.4849 0.8401 0.0041 23 1 0.6280 -2.5591 0.8866 24 1 0.6206 -2.5548 -0.8933 25 1 3.8373 -5.5133 -2.1822 26 1 3.3899 -5.2950 3.3050 27 1 3.8338 -6.8029 2.4671 28 1 5.6660 -4.4265 2.2556 29 1 5.6613 -5.3652 3.7618 30 1 7.3598 -6.3079 2.4094 31 1 5.9994 -7.4343 2.3530 32 1 6.6505 -5.3972 0.2126 33 1 7.0870 -7.1210 0.1621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259816282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:29 Heat of formation + Delta-G solvation = -9.736588 kcal Electronic energy + Delta-G solvation = -17330.143774 eV Core-core repulsion = 14548.208600 eV Total energy + Delta-G solvation = -2781.935173 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06033 -39.08495 -36.45971 -33.61153 -33.47711 -31.93661 -30.56896 -28.65885 -25.87066 -24.63530 -23.04348 -22.39373 -20.48768 -19.70476 -17.57070 -16.82399 -16.48949 -15.74043 -15.57214 -14.65200 -14.48377 -14.34489 -14.18729 -13.75811 -13.44973 -12.70076 -12.54056 -12.13844 -12.02212 -11.75201 -11.43134 -11.14942 -11.00389 -10.95135 -10.73627 -10.69351 -10.20016 -10.02845 -9.66000 -9.45073 -8.73947 -8.72674 -8.48321 -6.11606 -4.14954 1.03014 1.51590 1.91336 3.29945 3.33637 3.36442 3.91146 4.14805 4.22310 4.40944 4.47126 4.61510 4.69992 4.76324 4.83998 5.11154 5.19599 5.25630 5.28123 5.46811 5.59435 5.65957 5.68972 5.78226 5.89120 5.99198 6.07336 6.12176 6.85070 7.29781 7.38520 7.40102 7.52286 7.81030 8.13690 8.74154 8.83973 9.47028 10.99349 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031859 B = 0.005801 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.658382 B = 4825.582605 C = 5111.576401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.076 3.924 10 C 0.379 3.621 11 N -0.519 5.519 12 C 0.187 3.813 13 C -0.307 4.307 14 C 0.207 3.793 15 N -0.508 5.508 16 C -0.078 4.078 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.161 4.161 20 C 0.428 3.572 21 O -0.449 6.449 22 H 0.265 0.735 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.164 0.836 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.021 -11.514 3.891 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.037 3.963 10 C 0.117 3.883 11 N -0.232 5.232 12 C 0.019 3.981 13 C -0.313 4.313 14 C 0.057 3.943 15 N -0.222 5.222 16 C -0.116 4.116 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.199 4.199 20 C 0.301 3.699 21 O -0.321 6.321 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.181 0.819 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.010 -11.216 3.677 16.141 hybrid contribution 1.111 0.328 -0.147 1.168 sum 12.122 -10.888 3.530 16.671 Atomic orbital electron populations 1.69931 1.05976 1.27252 1.49708 1.24927 0.94953 0.99202 0.94863 0.86494 0.79482 0.82394 0.78709 1.20121 1.21003 1.20125 1.20693 0.92701 0.89131 1.52189 0.92816 1.18346 0.91271 0.86691 0.99967 1.24777 0.90433 0.91485 0.81629 1.68549 1.12909 1.11236 1.30554 1.23322 0.88795 0.89372 0.96572 1.21655 1.06848 1.05502 0.97316 1.21816 0.89515 0.89023 0.93928 1.68542 1.12436 1.10306 1.30871 1.20857 0.96826 1.00426 0.93535 1.21278 0.92799 0.99749 1.01687 1.20847 1.01208 1.00114 0.92712 1.21903 0.95528 1.04698 0.97732 1.22439 0.88904 0.85971 0.72544 1.90533 1.81836 1.23586 1.36127 0.92505 0.93089 0.93046 0.81868 0.88529 0.89878 0.90964 0.90143 0.90510 0.91541 0.88859 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -14.32 9.09 -34.44 -0.31 -14.63 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.08 2.00 5.39 -29.04 -0.16 1.84 16 10 C 0.38 8.79 6.82 -156.79 -1.07 7.72 16 11 N -0.52 -11.19 10.31 -10.30 -0.11 -11.30 16 12 C 0.19 3.25 11.16 -16.71 -0.19 3.07 16 13 C -0.31 -4.95 5.47 -105.21 -0.58 -5.53 16 14 C 0.21 3.54 6.04 -81.61 -0.49 3.04 16 15 N -0.51 -10.76 10.30 -6.45 -0.07 -10.82 16 16 C -0.08 -0.98 5.56 -27.61 -0.15 -1.14 16 17 C -0.12 -1.16 5.58 -27.44 -0.15 -1.31 16 18 C -0.11 -0.94 5.27 -28.33 -0.15 -1.09 16 19 C -0.16 -1.56 5.80 -28.47 -0.17 -1.73 16 20 C 0.43 5.79 5.60 -30.20 -0.17 5.62 16 21 O -0.45 -7.13 17.93 5.58 0.10 -7.03 16 22 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 26 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 0.94 7.60 -51.93 -0.39 0.54 16 28 H 0.07 0.82 7.84 -51.93 -0.41 0.42 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 32 H 0.09 0.87 8.13 -51.93 -0.42 0.44 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 284.38 15.07 4.29 4.29 Total: -1.00 -31.78 284.38 -7.89 -39.67 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.14 Total: -3.52 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.68 Total: -2.46 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.56 Total: -47.35 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.10 Total: -7.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.78 -7.89 -39.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.934 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds