Wall clock time and date at job start Mon Mar 30 2020 04:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.31906 * 118.79897 * 269.72883 * 10 9 7 12 12 C 1.32380 * 121.17562 * 179.04884 * 11 10 9 13 13 C 1.39862 * 118.19630 * 0.34954 * 12 11 10 14 14 C 1.39610 * 118.56407 * 0.86614 * 13 12 11 15 15 N 1.31740 * 119.38307 * 358.72242 * 14 13 12 16 16 C 1.51730 * 119.66899 * 177.44731 * 14 13 12 17 17 C 1.52538 * 109.11262 * 68.76299 * 16 14 13 18 18 C 1.52070 * 111.50440 * 272.74527 * 17 16 14 19 19 C 1.50755 * 114.34565 * 71.81201 * 18 17 16 20 20 C 1.47038 * 121.48338 * 181.79361 * 13 12 11 21 21 O 1.21254 * 121.32249 * 293.27764 * 20 13 12 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 24 24 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 25 25 H 1.07998 * 120.89936 * 180.12187 * 12 11 10 26 26 H 1.09000 * 109.52895 * 188.65880 * 16 14 13 27 27 H 1.09003 * 109.52938 * 308.87012 * 16 14 13 28 28 H 1.08999 * 109.07168 * 33.26768 * 17 16 14 29 29 H 1.09002 * 109.07196 * 152.22004 * 17 16 14 30 30 H 1.08998 * 108.50817 * 193.07149 * 18 17 16 31 31 H 1.08996 * 108.50661 * 310.55088 * 18 17 16 32 32 H 1.09000 * 109.38229 * 55.55878 * 19 18 17 33 33 H 1.08999 * 109.37795 * 175.33781 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.6346 -4.1287 -1.1706 12 6 3.5078 -5.1218 -1.2312 13 6 3.9885 -5.6533 -0.0301 14 6 3.5121 -5.1255 1.1714 15 7 2.6484 -4.1311 1.1432 16 6 3.9723 -5.7220 2.4885 17 6 5.4494 -5.4009 2.6932 18 6 6.3423 -6.4469 2.0441 19 6 6.3637 -6.3973 0.5376 20 6 4.9890 -6.7307 -0.0131 21 8 4.7264 -7.8413 -0.4227 22 1 -0.4849 0.8401 0.0041 23 1 0.6280 -2.5591 0.8866 24 1 0.6206 -2.5548 -0.8933 25 1 3.8373 -5.5133 -2.1822 26 1 3.3899 -5.2950 3.3050 27 1 3.8338 -6.8029 2.4671 28 1 5.6660 -4.4265 2.2556 29 1 5.6613 -5.3652 3.7618 30 1 7.3598 -6.3079 2.4094 31 1 5.9994 -7.4343 2.3530 32 1 6.6505 -5.3972 0.2126 33 1 7.0870 -7.1210 0.1621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:28 Heat of formation + Delta-G solvation = -30.011468 kcal Electronic energy + Delta-G solvation = -17331.022958 eV Core-core repulsion = 14548.208600 eV Total energy + Delta-G solvation = -2782.814358 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.45613 -40.32518 -37.48297 -35.56965 -34.85435 -33.57606 -31.58741 -30.51093 -27.03941 -26.37265 -24.28094 -24.00008 -21.59059 -20.85559 -19.02386 -18.66313 -17.96339 -17.18846 -16.66511 -16.37825 -15.87221 -15.47966 -15.20264 -14.87564 -14.50338 -14.39033 -14.13486 -13.59927 -13.51638 -13.09190 -12.96209 -12.66898 -12.61066 -12.28385 -11.85547 -11.80144 -11.74366 -11.68162 -11.55177 -10.71679 -10.65381 -10.27582 -10.24927 -8.26877 -6.39466 -0.42168 0.08529 0.76337 1.39350 1.42937 1.51209 2.35323 2.65910 2.84813 2.90997 3.04277 3.14748 3.33148 3.76072 3.83404 4.00449 4.04682 4.18616 4.31536 4.44028 4.49905 4.66078 4.74926 4.93023 5.02120 5.11278 5.13564 5.19355 5.29427 5.35082 5.37562 5.61644 5.96662 6.02638 6.24733 6.65282 7.15078 7.27257 8.84735 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031859 B = 0.005801 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.658382 B = 4825.582605 C = 5111.576401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.086 3.914 10 C 0.356 3.644 11 N -0.546 5.546 12 C 0.177 3.823 13 C -0.296 4.296 14 C 0.199 3.801 15 N -0.532 5.532 16 C -0.078 4.078 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.153 4.153 20 C 0.436 3.564 21 O -0.470 6.470 22 H 0.270 0.730 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.198 0.802 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 -12.384 4.704 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.066 0.934 9 C 0.047 3.953 10 C 0.092 3.908 11 N -0.260 5.260 12 C 0.012 3.988 13 C -0.302 4.302 14 C 0.051 3.949 15 N -0.247 5.247 16 C -0.116 4.116 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.191 4.191 20 C 0.311 3.689 21 O -0.344 6.344 22 H 0.079 0.921 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.214 0.786 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.145 -12.113 4.494 19.157 hybrid contribution 0.158 0.460 -0.398 0.629 sum 14.303 -11.653 4.095 18.898 Atomic orbital electron populations 1.70052 1.07588 1.28465 1.50177 1.25872 0.95873 1.03008 0.94027 0.85398 0.78301 0.77626 0.79104 1.19381 1.19945 1.19149 1.20934 0.92547 0.90452 1.52643 0.93395 1.17940 0.91634 0.88324 0.97398 1.23994 0.91642 0.92082 0.83107 1.68407 1.14546 1.13015 1.30079 1.23890 0.87828 0.88361 0.98724 1.22128 1.06256 1.05322 0.96467 1.22603 0.88040 0.87778 0.96498 1.68446 1.13971 1.12142 1.30114 1.21076 0.98794 1.00934 0.90758 1.21318 0.90791 0.99441 1.03583 1.20894 1.02622 0.99853 0.91317 1.21966 0.92695 1.05764 0.98653 1.22807 0.89722 0.84519 0.71835 1.90545 1.82412 1.24157 1.37290 0.92124 0.95584 0.95733 0.78551 0.88790 0.88135 0.92616 0.87458 0.87317 0.90629 0.88222 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.57 13.29 21.45 0.28 -55.28 16 2 C 0.01 0.66 5.46 84.66 0.46 1.12 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.53 -30.91 9.09 25.60 0.23 -30.68 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.09 4.83 5.39 29.10 0.16 4.99 16 10 C 0.36 17.32 6.82 138.61 0.95 18.27 16 11 N -0.55 -24.33 10.31 -186.50 -1.92 -26.25 16 12 C 0.18 6.11 11.16 85.00 0.95 7.06 16 13 C -0.30 -9.19 5.47 -20.25 -0.11 -9.30 16 14 C 0.20 6.71 6.04 43.23 0.26 6.97 16 15 N -0.53 -23.27 10.30 -174.31 -1.80 -25.06 16 16 C -0.08 -1.80 5.56 30.02 0.17 -1.63 16 17 C -0.11 -1.86 5.58 30.13 0.17 -1.69 16 18 C -0.11 -1.32 5.27 29.56 0.16 -1.16 16 19 C -0.15 -2.33 5.80 29.47 0.17 -2.16 16 20 C 0.44 10.57 5.60 28.34 0.16 10.73 16 21 O -0.47 -13.71 17.93 -2.95 -0.05 -13.77 16 22 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.02 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.20 5.20 8.06 -2.91 -0.02 5.18 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 1.99 7.60 -2.39 -0.02 1.97 16 28 H 0.05 1.13 7.84 -2.39 -0.02 1.11 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.84 7.91 -2.39 -0.02 0.83 16 32 H 0.10 1.46 8.13 -2.39 -0.02 1.44 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -72.24 284.38 3.37 -68.87 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.11 Total: 2.65 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 3.72 Total: 2.53 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.43 Total: -106.60 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.05 Total: -13.77 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.24 3.37 -68.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.856 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds