Wall clock time and date at job start Mon Mar 30 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48497 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47234 * 299.99664 * 3 2 1 6 6 H 1.48500 * 109.47473 * 59.99515 * 3 2 1 7 7 C 1.37871 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99720 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46998 * 59.99577 * 9 7 2 11 11 N 1.46897 * 109.46777 * 299.99607 * 9 7 2 12 12 C 1.53005 * 109.46933 * 179.97438 * 9 7 2 13 13 H 1.09005 * 109.47082 * 59.99933 * 12 9 7 14 14 O 1.42898 * 109.46898 * 300.00125 * 12 9 7 15 15 C 1.50694 * 109.46944 * 180.02562 * 12 9 7 16 16 C 1.34234 * 126.50481 * 95.33866 * 15 12 9 17 17 N 1.36830 * 109.93384 * 180.14765 * 16 15 12 18 18 H 0.97001 * 125.06783 * 179.82141 * 17 16 15 19 19 C 1.37689 * 109.86882 * 359.54926 * 17 16 15 20 20 C 1.39134 * 133.50571 * 180.26034 * 19 17 16 21 21 C 1.37745 * 119.77479 * 180.02562 * 20 19 17 22 22 C 1.38830 * 120.67221 * 0.02562 * 21 20 19 23 23 C 1.36628 * 120.52453 * 359.97438 * 22 21 20 24 24 C 1.39628 * 119.76381 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00395 * 0.02562 * 1 2 3 26 26 H 1.00897 * 111.00168 * 299.99587 * 11 9 7 27 27 H 1.00894 * 110.99924 * 63.95811 * 11 9 7 28 28 H 0.96699 * 113.99934 * 299.99449 * 14 12 9 29 29 H 1.07999 * 125.03333 * 359.97438 * 16 15 12 30 30 H 1.08000 * 120.10688 * 359.97438 * 20 19 17 31 31 H 1.08006 * 119.66035 * 180.02562 * 21 20 19 32 32 H 1.07995 * 119.73837 * 179.97438 * 22 21 20 33 33 H 1.07999 * 120.11413 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2454 -3.6620 0.0005 13 1 2.8720 -3.6043 0.8906 14 8 3.0669 -3.5862 -1.1662 15 6 1.4919 -4.9671 -0.0001 16 6 1.1800 -5.7086 -1.0747 17 7 0.4898 -6.8246 -0.6870 18 1 0.1555 -7.5096 -1.2870 19 6 0.3458 -6.8337 0.6823 20 6 -0.2535 -7.7151 1.5766 21 6 -0.2322 -7.4400 2.9261 22 6 0.3814 -6.2904 3.4050 23 6 0.9759 -5.4113 2.5446 24 6 0.9671 -5.6708 1.1726 25 1 -0.4850 0.8400 -0.0004 26 1 0.9638 -2.5251 2.0390 27 1 -0.3012 -1.8572 1.1908 28 1 2.5748 -3.6317 -1.9974 29 1 1.4335 -5.4595 -2.0946 30 1 -0.7345 -8.6114 1.2137 31 1 -0.6977 -8.1257 3.6187 32 1 0.3888 -6.0895 4.4661 33 1 1.4510 -4.5188 2.9243 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:28 Heat of formation + Delta-G solvation = 3.573240 kcal Electronic energy + Delta-G solvation = -17632.132468 eV Core-core repulsion = 14850.774453 eV Total energy + Delta-G solvation = -2781.358016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80513 -37.03360 -36.21809 -33.79772 -31.80482 -30.72636 -29.02963 -28.45463 -26.27495 -24.67867 -22.42545 -21.32424 -20.82593 -18.89544 -17.69742 -16.41396 -15.95986 -15.64774 -15.07182 -14.50298 -14.06677 -13.99191 -13.67620 -13.38620 -13.30859 -12.70072 -12.31911 -12.04475 -11.37248 -11.26736 -11.11775 -10.94102 -10.92727 -10.64581 -10.37675 -10.15204 -9.61543 -9.27846 -8.78652 -8.52433 -7.76451 -7.15272 -7.01657 -5.99501 -4.15156 1.59033 2.07348 3.21092 3.25878 3.34820 3.40881 3.52863 4.37457 4.41866 5.13328 5.15667 5.25761 5.37927 5.41168 5.52224 5.73694 5.90077 6.04900 6.19202 6.30839 6.40103 6.47249 6.71239 6.88690 6.91381 7.05718 7.16784 7.31228 7.60278 7.69844 7.85088 7.94837 8.21156 8.43636 8.83161 9.06082 9.21059 9.55810 10.97244 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032714 B = 0.006539 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.697254 B = 4280.945306 C = 4726.477992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.195 3.805 10 H 0.034 0.966 11 N -0.839 5.839 12 C 0.183 3.817 13 H 0.088 0.912 14 O -0.556 6.556 15 C -0.148 4.148 16 C 0.025 3.975 17 N -0.601 5.601 18 H 0.408 0.592 19 C 0.091 3.909 20 C -0.143 4.143 21 C -0.104 4.104 22 C -0.163 4.163 23 C -0.040 4.040 24 C -0.073 4.073 25 H 0.262 0.738 26 H 0.307 0.693 27 H 0.353 0.647 28 H 0.363 0.637 29 H 0.162 0.838 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -12.979 1.356 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.084 3.916 10 H 0.052 0.948 11 N -0.369 5.369 12 C 0.123 3.877 13 H 0.106 0.894 14 O -0.359 6.359 15 C -0.155 4.155 16 C -0.099 4.099 17 N -0.204 5.204 18 H 0.244 0.756 19 C -0.016 4.016 20 C -0.164 4.164 21 C -0.124 4.124 22 C -0.183 4.183 23 C -0.059 4.059 24 C -0.078 4.078 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.169 0.831 28 H 0.208 0.792 29 H 0.179 0.821 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.275 -13.602 1.389 13.676 hybrid contribution -0.009 1.665 -0.611 1.774 sum -0.284 -11.937 0.778 11.966 Atomic orbital electron populations 1.69765 1.05830 1.26769 1.51328 1.25017 0.94851 0.99249 0.94756 0.86519 0.80279 0.83591 0.77457 1.19740 1.21100 1.21175 1.21992 0.93981 0.91475 1.50487 0.92218 1.19470 0.90230 0.90110 0.91797 0.94802 1.59413 1.18121 1.55827 1.03577 1.20326 0.91005 0.88912 0.87467 0.89436 1.86519 1.36934 1.96628 1.15797 1.21245 1.04793 0.98386 0.91093 1.21304 1.00698 0.88834 0.99089 1.41557 1.51267 1.22325 1.05260 0.75609 1.18287 1.02060 0.97796 0.83493 1.19854 1.04731 0.99383 0.92427 1.20653 1.00102 0.97587 0.94017 1.20531 1.02578 0.95899 0.99246 1.20290 0.96716 0.97726 0.91144 1.18875 1.01621 0.94067 0.93280 0.92811 0.88431 0.83125 0.79155 0.82113 0.87179 0.86630 0.86698 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 11.54 55.43 0.64 -24.30 16 2 C 0.06 1.70 5.38 -17.82 -0.10 1.60 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.54 -14.47 8.39 -34.44 -0.29 -14.76 16 8 H 0.06 1.65 7.70 -52.49 -0.40 1.25 16 9 C 0.19 4.71 2.47 -68.86 -0.17 4.54 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 N -0.84 -19.58 8.19 -5.65 -0.05 -19.62 16 12 C 0.18 3.85 3.18 -27.88 -0.09 3.76 16 13 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 14 O -0.56 -11.23 12.71 -35.23 -0.45 -11.68 16 15 C -0.15 -2.80 5.12 -102.71 -0.53 -3.33 16 16 C 0.02 0.39 11.15 -16.73 -0.19 0.21 16 17 N -0.60 -8.60 6.07 -10.65 -0.06 -8.66 16 18 H 0.41 4.31 8.96 -40.82 -0.37 3.95 16 19 C 0.09 1.49 7.28 -83.99 -0.61 0.88 16 20 C -0.14 -2.04 10.08 -39.43 -0.40 -2.43 16 21 C -0.10 -1.43 10.01 -39.54 -0.40 -1.82 16 22 C -0.16 -2.41 9.97 -39.94 -0.40 -2.81 16 23 C -0.04 -0.69 9.74 -39.64 -0.39 -1.08 16 24 C -0.07 -1.35 6.04 -105.14 -0.63 -1.99 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 26 H 0.31 6.87 8.37 -39.29 -0.33 6.54 16 27 H 0.35 9.05 7.08 -39.30 -0.28 8.78 16 28 H 0.36 6.11 8.09 45.56 0.37 6.48 16 29 H 0.16 2.09 7.39 -52.49 -0.39 1.70 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.12 2.04 7.44 -52.49 -0.39 1.65 16 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -30.29 281.98 -7.91 -38.19 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -3.04 Total: 22.84 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -4.18 Total: -17.23 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.53 Total: -52.58 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.45 Total: -11.68 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.29 -7.91 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.766 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds