Wall clock time and date at job start Mon Mar 30 2020 04:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48497 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47234 * 299.99664 * 3 2 1 6 6 H 1.48500 * 109.47473 * 59.99515 * 3 2 1 7 7 C 1.37871 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99720 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46998 * 59.99577 * 9 7 2 11 11 N 1.46897 * 109.46777 * 299.99607 * 9 7 2 12 12 C 1.53005 * 109.46933 * 179.97438 * 9 7 2 13 13 H 1.09005 * 109.47082 * 59.99933 * 12 9 7 14 14 O 1.42898 * 109.46898 * 300.00125 * 12 9 7 15 15 C 1.50694 * 109.46944 * 180.02562 * 12 9 7 16 16 C 1.34234 * 126.50481 * 95.33866 * 15 12 9 17 17 N 1.36830 * 109.93384 * 180.14765 * 16 15 12 18 18 H 0.97001 * 125.06783 * 179.82141 * 17 16 15 19 19 C 1.37689 * 109.86882 * 359.54926 * 17 16 15 20 20 C 1.39134 * 133.50571 * 180.26034 * 19 17 16 21 21 C 1.37745 * 119.77479 * 180.02562 * 20 19 17 22 22 C 1.38830 * 120.67221 * 0.02562 * 21 20 19 23 23 C 1.36628 * 120.52453 * 359.97438 * 22 21 20 24 24 C 1.39628 * 119.76381 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00395 * 0.02562 * 1 2 3 26 26 H 1.00897 * 111.00168 * 299.99587 * 11 9 7 27 27 H 1.00894 * 110.99924 * 63.95811 * 11 9 7 28 28 H 0.96699 * 113.99934 * 299.99449 * 14 12 9 29 29 H 1.07999 * 125.03333 * 359.97438 * 16 15 12 30 30 H 1.08000 * 120.10688 * 359.97438 * 20 19 17 31 31 H 1.08006 * 119.66035 * 180.02562 * 21 20 19 32 32 H 1.07995 * 119.73837 * 179.97438 * 22 21 20 33 33 H 1.07999 * 120.11413 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2454 -3.6620 0.0005 13 1 2.8720 -3.6043 0.8906 14 8 3.0669 -3.5862 -1.1662 15 6 1.4919 -4.9671 -0.0001 16 6 1.1800 -5.7086 -1.0747 17 7 0.4898 -6.8246 -0.6870 18 1 0.1555 -7.5096 -1.2870 19 6 0.3458 -6.8337 0.6823 20 6 -0.2535 -7.7151 1.5766 21 6 -0.2322 -7.4400 2.9261 22 6 0.3814 -6.2904 3.4050 23 6 0.9759 -5.4113 2.5446 24 6 0.9671 -5.6708 1.1726 25 1 -0.4850 0.8400 -0.0004 26 1 0.9638 -2.5251 2.0390 27 1 -0.3012 -1.8572 1.1908 28 1 2.5748 -3.6317 -1.9974 29 1 1.4335 -5.4595 -2.0946 30 1 -0.7345 -8.6114 1.2137 31 1 -0.6977 -8.1257 3.6187 32 1 0.3888 -6.0895 4.4661 33 1 1.4510 -4.5188 2.9243 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:27 Heat of formation + Delta-G solvation = -18.986559 kcal Electronic energy + Delta-G solvation = -17633.110735 eV Core-core repulsion = 14850.774453 eV Total energy + Delta-G solvation = -2782.336282 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.02601 -38.60317 -37.47698 -35.70012 -33.43306 -32.34673 -30.25329 -29.71629 -28.17735 -26.44684 -23.59643 -22.70491 -22.42412 -20.35526 -19.01400 -18.28955 -17.42646 -17.17965 -16.39813 -16.22653 -15.62966 -15.48176 -15.11677 -14.67863 -14.59522 -14.49100 -14.02826 -13.35619 -13.09423 -12.86273 -12.77423 -12.49654 -12.39382 -12.30664 -12.06876 -11.74575 -11.46111 -10.79223 -10.63032 -10.18407 -9.06850 -8.93752 -8.37835 -8.02563 -6.29845 0.40719 0.89206 1.36198 1.39922 1.51184 1.91950 2.39026 2.42203 3.09931 3.18828 3.73351 4.02359 4.13262 4.25618 4.38922 4.51592 4.57844 4.64159 4.79160 4.94328 4.99555 5.10590 5.21330 5.36094 5.66581 5.71420 5.76931 5.87186 5.94427 6.04926 6.18044 6.42126 6.69267 6.89212 6.96773 7.11543 7.19779 7.45397 8.87664 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032714 B = 0.006539 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.697254 B = 4280.945306 C = 4726.477992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.020 3.980 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.045 0.955 9 C 0.202 3.798 10 H 0.004 0.996 11 N -0.825 5.825 12 C 0.200 3.800 13 H 0.068 0.932 14 O -0.565 6.565 15 C -0.194 4.194 16 C 0.042 3.958 17 N -0.585 5.585 18 H 0.428 0.572 19 C 0.074 3.926 20 C -0.140 4.140 21 C -0.105 4.105 22 C -0.161 4.161 23 C -0.072 4.072 24 C -0.103 4.103 25 H 0.264 0.736 26 H 0.311 0.689 27 H 0.339 0.661 28 H 0.377 0.623 29 H 0.190 0.810 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.136 0.864 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 -14.532 1.345 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.594 4.594 8 H 0.064 0.936 9 C 0.091 3.909 10 H 0.022 0.978 11 N -0.353 5.353 12 C 0.139 3.861 13 H 0.086 0.914 14 O -0.370 6.370 15 C -0.201 4.201 16 C -0.083 4.083 17 N -0.190 5.190 18 H 0.267 0.733 19 C -0.034 4.034 20 C -0.160 4.160 21 C -0.124 4.124 22 C -0.180 4.180 23 C -0.090 4.090 24 C -0.108 4.108 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.153 0.847 28 H 0.225 0.775 29 H 0.207 0.793 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.154 0.846 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.816 -15.195 1.368 15.278 hybrid contribution 0.135 2.078 -0.599 2.166 sum -0.681 -13.117 0.770 13.158 Atomic orbital electron populations 1.69862 1.06815 1.27488 1.51670 1.25683 0.95630 1.02121 0.94470 0.85577 0.78859 0.79968 0.77549 1.19925 1.20681 1.20629 1.22204 0.93440 0.93083 1.50693 0.93633 1.19345 0.90108 0.90753 0.90711 0.97783 1.59362 1.17625 1.54768 1.03567 1.19848 0.89854 0.89293 0.87073 0.91389 1.86465 1.37396 1.96690 1.16410 1.21041 1.07526 0.98601 0.92921 1.21689 0.98743 0.88316 0.99602 1.41514 1.50265 1.22171 1.05066 0.73267 1.18587 1.02561 0.97800 0.84423 1.20293 1.03601 0.99794 0.92353 1.21104 0.99235 0.97447 0.94614 1.20865 1.01332 0.95698 1.00081 1.20376 0.98628 0.98502 0.91527 1.19135 1.02718 0.95282 0.93688 0.92689 0.88000 0.84693 0.77520 0.79321 0.83927 0.83047 0.84588 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.63 11.54 21.44 0.25 -51.39 16 2 C 0.02 1.11 5.38 84.65 0.46 1.57 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.55 -30.43 8.39 25.60 0.21 -30.22 16 8 H 0.05 2.58 7.70 -2.91 -0.02 2.56 16 9 C 0.20 10.08 2.47 44.17 0.11 10.19 16 10 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 11 N -0.82 -39.76 8.19 -171.79 -1.41 -41.17 16 12 C 0.20 8.65 3.18 29.85 0.10 8.75 16 13 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 14 O -0.56 -23.10 12.71 -148.98 -1.89 -25.00 16 15 C -0.19 -7.38 5.12 -18.63 -0.10 -7.48 16 16 C 0.04 1.30 11.15 83.00 0.93 2.22 16 17 N -0.59 -15.47 6.07 -187.61 -1.14 -16.61 16 18 H 0.43 7.72 8.96 -92.71 -0.83 6.89 16 19 C 0.07 2.28 7.28 39.03 0.28 2.57 16 20 C -0.14 -3.54 10.08 22.37 0.23 -3.32 16 21 C -0.11 -2.55 10.01 22.29 0.22 -2.32 16 22 C -0.16 -4.52 9.97 22.03 0.22 -4.30 16 23 C -0.07 -2.49 9.74 22.23 0.22 -2.27 16 24 C -0.10 -3.81 6.04 -20.20 -0.12 -3.93 16 25 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.31 14.51 8.37 -89.70 -0.75 13.76 16 27 H 0.34 17.91 7.08 -89.70 -0.63 17.28 16 28 H 0.38 12.67 8.09 -74.06 -0.60 12.07 16 29 H 0.19 4.50 7.39 -2.91 -0.02 4.48 16 30 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.11 3.85 7.44 -2.91 -0.02 3.82 16 Total: -1.00 -65.69 281.98 -1.06 -66.75 By element: Atomic # 1 Polarization: 51.63 SS G_CDS: -1.64 Total: 49.99 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 2.75 Total: -28.54 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -2.30 Total: -109.16 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.89 Total: -25.00 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -65.69 -1.06 -66.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.762 kcal (2) G-P(sol) polarization free energy of solvation -65.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds